mRNA_L-elsbetiae_contig1676.4557.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A6H5L297_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L297_9PHAE) HSP 1 Score: 501 bits (1289), Expect = 2.480e-168 Identity = 299/572 (52.27%), Postives = 359/572 (62.76%), Query Frame = 1 Query: 1 CCKVKSSRLGGKGTFATRHLEENTTLFRELAFL------SADQGAAVTQSPHLNAITVQHKNCPPCVRLDPADTGGTMSGS-QETCRFVRAYEASPPQVRKRVLQLAPFDTN-DTT-------------------------HAIVELVRAEVDMLRGFDDDLRAIPAGELERAVHR-----YWANCMGQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPECCAD----VRRQQRSGEEVESGPGSPAALHTR---------HGRGEEKQVPRPSKEPAVFADWWNQSRMWVCRSCGWCSDADAGTAVSTSLPRLQRREGILSAEVFALVMANTVARSSPTAAKPYRLHRLVPGGGSTASGSEARSLEDGELQQQTRRDAVQGLLGASVALLGRRHWTTFSCVFLRLEQELSARS-GKGSPAPWS-TPAPSRPKAGTEFLDWAIQELNALWQWLSVALETATSHPPAYYLFDVVCDLLGLINDSGKTRE---MQALADRVGSWVSAFADEE 1548 CC++K+S + G+G FAT+ L LF+E AFL +A + AA ++ P L+ ITVQHK+CPPCVRL P DTGG + G +ETCRF AY +S +R RV +L+P T DTT +AIV LVR EV LR D DLR +P+ ELE AVHR YWANCMGQEGSLYERGS NHSC ANCTRV L G ERAF+TLRP+AAGEELTLSYLPSG+EVMGTVVRRRHLWLSRGFLC CDRCS+PQDEVRQV CPECC + + R+ SG V G A H+ +G G + RP E AVFA+WW QS MWVC+ CGWCS+ D+ + S L +E I+SAEVFALVMA+TV SP+A+ + + G SGS E Q Q RRDA++G+L SVA+LGRRHWTTFSC +LRL+ ELSARS G P S +P S + EFLDWA++ELNAL QWL AL + TSHPPAYY+FD+VCDLL +Q L RV +WV FADE+ Sbjct: 11 CCEIKASCVAGQGLFATKDLVTGQVLFKETAFLVPGRRDAAAEIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGILRGCYEETCRFALAYLSSTASIRSRVQELSPNMTPADTTXXXXXXXXXXXXXXXXXXXXXXXNSNAIVTLVRREVAWLRKCDRDLRRLPSRELEGAVHRQDRFTYWANCMGQEGSLYERGSRFNHSCTANCTRVTLDDGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKNYNSPLERRSSSGGRV-VGSSRSAERHSAPACRDGGPYNGDGRRR---RPEAE-AVFAEWWKQSEMWVCQYCGWCSNIDSTCSDSAPSRSLHCKESIVSAEVFALVMAHTVDPRSPSASCT---NMALDG----RSGSRGWPHHPDE-QLQARRDAIKGILETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGQRRPRSGSPHSSSLRIQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDATRGCSARNTVGGLQLLLGRVEAWVLVFADED 569
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: D8LNS6_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS6_ECTSI) HSP 1 Score: 341 bits (875), Expect = 4.420e-108 Identity = 224/566 (39.58%), Postives = 257/566 (45.41%), Query Frame = 1 Query: 1 CCKVKSSRLGGKGTFATRHLEENTTLFRELAFLSA----DQGAAVTQS---PHLNAITVQHKNCPPCVRLDPADTGGTMSGS-QETCRFVRAYEASPPQVRKRVLQLA----PFDTNDTTH-----------------------AIVELVRAEVDMLRGFDDDLRAIPAGELERAVHRYWANCMGQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPECCADVRRQQRSGEEVESGPGSPAALHTRHGRGEEKQVPRPS------------KEPAVFADWWNQSRMWVCRSCGWCSDADAGTAVSTSLPRLQRREGILSAEVFALVMANTVARSSPTAAKPYRLHRLVPGGGSTASGSEARSLEDGELQQQTRRDAVQGLLGASVALLGRRHWTTFSCVFLRLEQELSARSGKGSPAPWSTPAPSRPKAGTEFLDWAIQELNALWQWLSVALETATSHPPAYYLFDVVCDLLGLINDSGKTRE---MQALADRVGSWVSAFADEE 1548 CC++K S + G+G FAT+ L + LF+E AF D A V S P L+ ITVQHK+CPPCVRL P DTGG +SG +ET RF AY +S +R RV +L+ P DT AIV LVR EV LR D DLR++P+ EL AVHRYWANCMGQEGSLYERGS NHSC ANCTRV L GG ERAF+TLRP+AAGEELTLSYLPSG+EVMGTVVRRRHLWLSRGFLC CDRCS+P DEVRQV CPECC S +E S G +R G R +E VFA+WW QS MW EFLDWA++ELNAL QWL AL TSHPPAYY+FD+VCDLL +Q L RV +WVS FADE+ Sbjct: 11 CCEIKISCVAGQGLFATKDLVKGQVLFKETAFFLVPGRRDDAAVVAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFALAYLSSTASIRSRVQELSSSMRPADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVTLVRREVAWLRKCDRDLRSLPSRELVGAVHRYWANCMGQEGSLYERGSRFNHSCTANCTRVTLDGGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPHDEVRQVVCPECCKGYN----SPQERRSSSGGRVVGSSRSAEGHSTPTCRDGGPYKGGGARRRPEEETVFAEWWKQSEMWP-----------------------------------------------------------------------------------------------------------------------------------------------EFLDWAMRELNALEQWLGAALGPVTSHPPAYYIFDLVCDLLDATRGCSARDTVGGLQLLLGRVEAWVSVFADED 429
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A7S1LTZ7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LTZ7_ALECA) HSP 1 Score: 72.8 bits (177), Expect = 6.980e-10 Identity = 42/102 (41.18%), Postives = 51/102 (50.00%), Query Frame = 1 Query: 445 MGQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPECCADVR 750 M ++Y S NHSC N + S GR TLR +A GEELT+SYL M V T RR L GF C C+RC+ D +R CP C +VR Sbjct: 261 MSHSCAVYRTASRFNHSCGPNTEKSFSSDGRVS--LRTLRDVAVGEELTVSYLGDEMLVRCTARRRFPLTNGWGFHCQCERCAAASDALRAFRCPSCGGEVR 360
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A813HXD0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HXD0_POLGL) HSP 1 Score: 67.8 bits (164), Expect = 3.200e-8 Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 448 GQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPECCA 741 G LY RG NHSC + GR V LRPI AGEE+T+SY+ + + RR+ L L+ GF C C RC+ P D+ R + CP C A Sbjct: 27 GGRTGLYARGCRANHSCRPSARLCISDSGRLR--LVALRPIEAGEEITVSYMAESDLLRPSSSRRKLLDLTWGFQCTCARCAGP-DDRRTLRCPACAA 121
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A812PIX4_SYMPI (Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PIX4_SYMPI) HSP 1 Score: 67.4 bits (163), Expect = 4.230e-8 Identity = 51/171 (29.82%), Postives = 78/171 (45.61%), Query Frame = 1 Query: 214 MSGSQETCRFVRAYEASPPQVRKRVLQLAPFDTNDTTHAIVELVRAEVDMLRGFDDDLRAIPAGELERAVHRYWANCMGQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVEC 726 + S R V + P +R +L + F D H +V++ + + + +A L+ + N G ++ S +NHSCA NC G R TLRPIA GEELT+SYL + ++ T R+ LW S+ F+C C RC+ +D +R C Sbjct: 3 LKASTALVRDVLGFVKMPDSLRGALLSFS-FPRLDLEHGLVDVALQLAKLCKDRLPECKAFEVEWLQTGILVTEMNIF-PGGRIFWTLSRINHSCAPNCVFTNSPGRWGLR---TLRPIAKGEELTISYLGEEL-LLPTSQRKWLLWRSKCFVCQCLRCTSTEDPLRDRAC 167
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A812XSP0_SYMPI (SET5 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XSP0_SYMPI) HSP 1 Score: 66.2 bits (160), Expect = 1.170e-7 Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 1 Query: 460 SLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPECCA 741 +LY NHSC + GR V L PI AG+E+T+SYL + + +RR+ L + GFLC C RC+QP D+ R CP CC+ Sbjct: 158 ALYATACRANHSCLPRARLSVEADGRVR--LVALTPIRAGDEVTVSYLSESDLLEPSSIRRKLLRQTWGFLCSCQRCTQP-DDRRSYLCPSCCS 248
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A6J1S5A0_FRAOC (SET domain-containing protein SmydA-8-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1S5A0_FRAOC) HSP 1 Score: 65.9 bits (159), Expect = 1.400e-7 Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 460 SLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQP 699 ++Y++GSLL HSC ANC + S G E T P+ AGE LT+ Y + GT RR+HL+ ++ F C C+RC P Sbjct: 235 AVYDKGSLLAHSCRANCAKSFSSAG--ELVVRTALPVKAGEPLTICYTDP---MWGTAARRQHLYDTKFFWCRCERCVDP 309
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: UPI001F4FFDA0 (SET domain-containing protein SmydA-8-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4FFDA0) HSP 1 Score: 65.5 bits (158), Expect = 2.150e-7 Identity = 70/271 (25.83%), Postives = 102/271 (37.64%), Query Frame = 1 Query: 7 KVKSSRLGGKGTFATRHLEENTTLFRELAFLSADQGAA--VTQSPHLNAITVQHKNCPPCVR--------------------------LDPADTGGTMSGSQETCRFVRAYEASPPQVRKRVLQLAPFDTNDTTHAIVELV------RAEVDMLRGFDDDLRAIPAGELERAVH--RYWANCMGQEGSLYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPI--AAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQD 705 ++ S LGG+G ATR L + R+ + A + A+ + H A + + C C L P GG C VR P +R+L + +EL+ R + LR R + E + R G+ LY +++NH+C+ N T G A+ A V + A G+ELT SY P + GT RR HL ++GFLC CDRC PQ+ Sbjct: 155 RLSRSPLGGRGLVATRALSAGELVLRDPPLVLAPRAASAPLCLRCHRRAAPDRLRQCARCHMPVCCDAAGDGQEDHHAGECALLAEWGLRPPAEGGWPRPVVRACAAVRCLAL--PASDQRLLAALQAHQHPRYRHEMELLSRLCGGRVPPERLRAAGRAARVLDTNAFETPLDGSRRPEALSGRLRGLYPLAAMMNHACSPNTTH----GYDAQHAMVVRAAVDVARGQELTTSYAPL---MWGTAARRAHLLDTKGFLCRCDRCRDPQE 416
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A7S2D1L5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2D1L5_9DINO) HSP 1 Score: 59.7 bits (143), Expect = 3.080e-7 Identity = 36/91 (39.56%), Postives = 45/91 (49.45%), Query Frame = 1 Query: 463 LYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPEC 735 LY NHSCA N + GR LRPIA GEE+++SY+ G E++ RR+ L GF C C RC Q D+ R C C Sbjct: 27 LYRTACRANHSCAPNAALCVQADGRIH--LKALRPIAEGEEVSVSYIGEG-ELLRPTSRRQKLLSKWGFACQCPRC-QGHDDARGFTCSSC 113
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Match: A0A0G4GT96_VITBC (SET domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GT96_VITBC) HSP 1 Score: 64.7 bits (156), Expect = 3.600e-7 Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 463 LYERGSLLNHSCAANCTRVALSGGRAERAFVTLRPIAAGEELTLSYLPSGMEVMGTVVRRRHLWLSRGFLCHCDRCSQPQDEVRQVECPEC 735 LY R SL+ HSCAA+C L G + + G+ELT+SY+ + T +RR L L F+C CDRC P+DE R CP C Sbjct: 295 LYNRTSLMAHSCAASCCW--LYGDNDAYVLRSRVALKEGDELTISYIGDDDLIKSTDMRREKL-LGWRFICRCDRCVMPRDEARGFRCPNC 382 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1676.4557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1676.4557.1 >prot_L-elsbetiae_contig1676.4557.1 ID=prot_L-elsbetiae_contig1676.4557.1|Name=mRNA_L-elsbetiae_contig1676.4557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp MSGSQETCRFVRAYEASPPQVRKRVLQLAPFDTNDTTHAIVELVRAEVDMback to top mRNA from alignment at L-elsbetiae_contig1676:7570..9846- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1676.4557.1 ID=mRNA_L-elsbetiae_contig1676.4557.1|Name=mRNA_L-elsbetiae_contig1676.4557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2277bp|location=Sequence derived from alignment at L-elsbetiae_contig1676:7570..9846- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1676:7570..9846- >mRNA_L-elsbetiae_contig1676.4557.1 ID=mRNA_L-elsbetiae_contig1676.4557.1|Name=mRNA_L-elsbetiae_contig1676.4557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig1676:7570..9846- (Laminarionema elsbetiae ELsaHSoW15)back to top |