mRNA_L-elsbetiae_contig16745.4553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16745.4553.1
Unique NamemRNA_L-elsbetiae_contig16745.4553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.280e-49
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 1
Query:    1 GIDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSR 261
            G+DLDALGIVDGKFCWVVFVDIL   ADGNLLDASSFAAYTALNTARIPKVTPLVGEGG++DDFEISSEIDDAV+IKGA NVPVCLTMSR
Sbjct:  125 GLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSEIDDAVAIKGATNVPVCLTMSR 214          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.830e-48
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 GIDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            G+DLDALGIVDGKFCWVVFVDIL   ADGNLLDASSFAAYTALNTARIPKVTPLVGEGG++DDFEISS IDDAV+IKGA NVPVCLTMSRV
Sbjct:  125 GLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSNIDDAVAIKGATNVPVCLTMSRV 215          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: A0A7S2Y3L9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3L9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.730e-24
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    7 DLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVF-DDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            D  +L I+ G+FCWVV+VDIL   ADGN+LDA+SFAAY ALNTAR+PK+T + GE G   DDFE+SS++ D+V +  A +VPVC+T+S V
Sbjct:  122 DTHSLCIIPGRFCWVVYVDILVLRADGNVLDATSFAAYAALNTARVPKLTVVPGEAGASEDDFELSSDVADSVPLL-AQDVPVCITLSLV 210          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.810e-21
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEG-GVFDDFEISSEIDDAVSIKGAANVPVCLTMSRVR 267
            +DL +L I+ G+FCW+V++D+L   ADGNLLDA+SFAAY A NTA +P+ T + GEG GV DDFEI  +++ A  + GA  V   L + +V+
Sbjct:  105 LDLKSLCIIPGRFCWIVYLDVLVLQADGNLLDAASFAAYVAFNTALVPRTTVISGEGAGVEDDFEIDGDLNTATRLPGADKVHEQLHLDQVQ 196          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: R7T790_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T790_CAPTE)

HSP 1 Score: 66.2 bits (160), Expect = 8.280e-11
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRVRLDGV 279
            +DL+AL I+ GK CW+++VD+L     GNL DA + A  +AL+  RIP VT  VGE G  +  E+S +  D   + G  NVP  +T++++ L  V
Sbjct:  115 LDLEALCIISGKQCWLLYVDVLILECGGNLFDAVALAVKSALHQTRIPLVTVSVGERGEAE-IELSDDPFDCKRV-GTDNVPCLVTLNKIGLAHV 207          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: A0A0C9RSH6_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_15114_1182 transcribed RNA sequence n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9RSH6_9SPER)

HSP 1 Score: 59.7 bits (143), Expect = 2.030e-8
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 GIDLDALGIVDGKFCWVVFVD---ILADGNLLDASSFAAYTALNTARIPKVTPLVGEG-GVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            GIDL  L +V+GKFCW ++++   + +DGNLLDA   A   AL+   IPKV  + G      +D  IS   DD  S    + VPV +T+++V
Sbjct:  121 GIDLTNLKVVEGKFCWDLYIEGLVVSSDGNLLDALGIAIKAALSNTCIPKVEVVPGTSPDQQEDIGIS---DDEFSHLDTSRVPVIVTLTKV 209          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: F6PLY6_CIOIN (Exosome complex component RRP42-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6PLY6_CIOIN)

HSP 1 Score: 58.2 bits (139), Expect = 7.340e-8
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            IDL+ LGI+  K CWVV VD+L     GNLLDA S A   AL+   +P +    G+ G   +  +  + +D V      N PV +T+S+V
Sbjct:  119 IDLNTLGIIPHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPNIQVTDGDEGT-QEISLPDDPND-VKFINTVNAPVLVTISKV 206          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: A0A7C2VK39_9ARCH (Exosome complex component Rrp42 n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C2VK39_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 1.680e-6
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVD--ILAD-GNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            I+L+ L ++ G+  WV+FVD  IL D GNL DASS+AA  AL T +IP+V  + G+  V  D  +   ID+         VPV +T SRV
Sbjct:  118 INLEKLCVIPGEKVWVLFVDLYILDDNGNLFDASSYAAVAALLTTKIPEVE-VNGDNVVIRDERMLLPIDE---------VPVSITFSRV 197          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: UPI001E1DF716 (exosome complex component RRP42-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF716)

HSP 1 Score: 53.9 bits (128), Expect = 2.430e-6
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            +DL  L +V+GK CWVV++D+L     GNL DA+S A   AL    IP +T    EG +  + E+S +  D   +    + P  +T+S++
Sbjct:  119 LDLKQLCVVEGKQCWVVYIDVLLLECGGNLFDAASIAVKAALFNTCIPTLTVTQDEGHI--ELELSDDPYDVQRLD-VMHAPCIVTLSKI 205          
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Match: T1EEF6_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EEF6_HELRO)

HSP 1 Score: 53.9 bits (128), Expect = 2.470e-6
Identity = 31/90 (34.44%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 IDLDALGIVDGKFCWVVFVDIL---ADGNLLDASSFAAYTALNTARIPKVTPLVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRV 264
            +D + LGI+ GK CWV++VD+L     GNL+DA S A   AL  ++IP +T +  E    +  E+S +  D   +   +  P  +T+++V
Sbjct:  119 LDYEKLGIIPGKKCWVLYVDVLILEVGGNLIDAISLAVKAALFNSKIPNLTVVTSELNEAE-IELSDDPYDCFRLD-VSRAPCIVTLNKV 206          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16745.4553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FYR5_ECTSI2.280e-4991.11RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JQU5_9PHAE1.830e-4890.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y3L9_9STRA2.730e-2458.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YWB1_9STRA7.810e-2150.00Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
R7T790_CAPTE8.280e-1141.05Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A0C9RSH6_9SPER2.030e-840.22TSA: Wollemia nobilis Ref_Wollemi_Transcript_15114... [more]
F6PLY6_CIOIN7.340e-838.89Exosome complex component RRP42-like n=1 Tax=Ciona... [more]
A0A7C2VK39_9ARCH1.680e-643.33Exosome complex component Rrp42 n=1 Tax=Candidatus... [more]
UPI001E1DF7162.430e-635.56exosome complex component RRP42-like n=1 Tax=Merce... [more]
T1EEF6_HELRO2.470e-634.44Uncharacterized protein n=1 Tax=Helobdella robusta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16745contigL-elsbetiae_contig16745:2241..3537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D7FYR5
Preferred nameEXOSC7
KEGG koko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1612@2759
Ec32 ortholog descriptionRrp42 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-26_004200.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons3
Model size291
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16745.4553.1prot_L-elsbetiae_contig16745.4553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16745 2241..3537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.072671-CDS-L-elsbetiae_contig16745:2240..23901622815696.072671-CDS-L-elsbetiae_contig16745:2240..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 2241..2390 -
1691683043.6636813-CDS-L-elsbetiae_contig16745:2240..23901691683043.6636813-CDS-L-elsbetiae_contig16745:2240..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 2241..2390 -
1622815696.088656-CDS-L-elsbetiae_contig16745:2848..29201622815696.088656-CDS-L-elsbetiae_contig16745:2848..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 2849..2920 -
1691683043.6768224-CDS-L-elsbetiae_contig16745:2848..29201691683043.6768224-CDS-L-elsbetiae_contig16745:2848..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 2849..2920 -
1622815696.0994864-CDS-L-elsbetiae_contig16745:3468..35371622815696.0994864-CDS-L-elsbetiae_contig16745:3468..3537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 3469..3537 -
1691683043.6856265-CDS-L-elsbetiae_contig16745:3468..35371691683043.6856265-CDS-L-elsbetiae_contig16745:3468..3537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16745 3469..3537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16745.4553.1

>prot_L-elsbetiae_contig16745.4553.1 ID=prot_L-elsbetiae_contig16745.4553.1|Name=mRNA_L-elsbetiae_contig16745.4553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
GIDLDALGIVDGKFCWVVFVDILADGNLLDASSFAAYTALNTARIPKVTP
LVGEGGVFDDFEISSEIDDAVSIKGAANVPVCLTMSRVRLDGVRPR*
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mRNA from alignment at L-elsbetiae_contig16745:2241..3537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16745.4553.1 ID=mRNA_L-elsbetiae_contig16745.4553.1|Name=mRNA_L-elsbetiae_contig16745.4553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1297bp|location=Sequence derived from alignment at L-elsbetiae_contig16745:2241..3537- (Laminarionema elsbetiae ELsaHSoW15)
GGTATCGACCTTGACGCCCTCGGGATTGTGGACGGCAAGTTCTGCTGGGT GGTGTTCGTCGACATTCTCGTCTTGCAGGCGAGCAAAAGGAAAATGATAA TGCCTTAGCCGAGGGCGGGCGGGGGCGGAAAGAAGCGGAGCGGGGGGGGG GGGTCGCGCACTGTTTGAGATAATGGCGGGGCTCCTGTGTGTTTAGCCAC TGTGCTGGCACGTACATACCTGCACACTTCTTTTTTTTTCGCTGCGCGTT TGGCAGTGTCCGGTGCTGCACATGGCCCCGAGACCCCCCCCCATCCTTCC CAACTGTTTGTCAGTAACGCGGTTCTTTGATGTTCGCCATCGTATTTTAT CTGTACCGGTAAGCTTGGCTCCTTCGGGATGGATGCGAGAGAGTGCGCCG GGGGGGCGTTTTATGTGGCTCTTCGGCCCGCAGGGGGTAGGTAACCAAAC CACTATTCGCTTTTTCATGATCAACTATTTGGCCGCTGTCGGTCGCTACA TACATCTACAGGGCGCCTGGCTCCTTTTCCTCTCTCTCTCGCCTCAGAAA ACGTTCTGGTGCACGTTTCTTTACGCCTTCACTTATTTATGTTTTATACA TCTATGGACGCCTTTAGGCCGATGGAAACCTGTTGGACGCGTCGTCGTTC GCGGCTTACACTGCCCTCAACACCGCAAGAATACCAAAGGTATGCAAATC GGCGGGAGCACCGTTGAACGCCTGCCTATTTGTATTTATTTAGCAGTCGT AGTTTTTTTTTTTTCTTTTTTTTTGTTTTTATTTCTGCAGCATGTGACCG TATCGACGTGTAACTCTCTTGGTTGGTGGCGTGCTTGTGTGATGCTGTGT GTTTTGGTGTGCAGACAGACATCGGAGGCTTCTTTCAAGGGGCCGACCGC GCGCGCACAAGTTTTTTTTTTTGTTTTGCGTCCAGCGAGAGTTGTGCGAT ACCTTCCTTCGTTTCTCGCCCCTTTGCTCTCATGACGCTTAACATTTCCC CCGGTGGTCGCCCACCACTTTTTTCGACGAGCCACATGTCGCCGCGCGCT TGCCTCACAGCAAGCAGATTGCTCTCCTCGTTCGTGATGTATGTAGCACT ATTTTGACGTATGTTTCCCCCCCCCCCCGAAATCCGCACGAAAAAAGGTG ACCCCTCTCGTCGGGGAGGGCGGCGTCTTCGACGACTTCGAGATATCCTC GGAGATCGATGACGCGGTTTCCATCAAGGGGGCGGCCAACGTCCCGGTGT GCCTGACCATGTCTCGGGTGAGACTTGATGGAGTAAGACCTCGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16745:2241..3537-

>mRNA_L-elsbetiae_contig16745.4553.1 ID=mRNA_L-elsbetiae_contig16745.4553.1|Name=mRNA_L-elsbetiae_contig16745.4553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig16745:2241..3537- (Laminarionema elsbetiae ELsaHSoW15)
GGTATCGACCTTGACGCCCTCGGGATTGTGGACGGCAAGTTCTGCTGGGT
GGTGTTCGTCGACATTCTCGGTATCGACCTTGACGCCCTCGGGATTGTGG
ACGGCAAGTTCTGCTGGGTGGTGTTCGTCGACATTCTCGCCGATGGAAAC
CTGTTGGACGCGTCGTCGTTCGCGGCTTACACTGCCCTCAACACCGCAAG
AATACCAAAGGCCGATGGAAACCTGTTGGACGCGTCGTCGTTCGCGGCTT
ACACTGCCCTCAACACCGCAAGAATACCAAAGGTGACCCCTCTCGTCGGG
GAGGGCGGCGTCTTCGACGACTTCGAGATATCCTCGGAGATCGATGACGC
GGTTTCCATCAAGGGGGCGGCCAACGTCCCGGTGTGCCTGACCATGTCTC
GGGTGAGACTTGATGGAGTAAGACCTCGCTGAGTGACCCCTCTCGTCGGG
GAGGGCGGCGTCTTCGACGACTTCGAGATATCCTCGGAGATCGATGACGC
GGTTTCCATCAAGGGGGCGGCCAACGTCCCGGTGTGCCTGACCATGTCTC
GGGTGAGACTTGATGGAGTAAGACCTCGCTGA
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