mRNA_L-elsbetiae_contig16741.4552.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16741.4552.1
Unique NamemRNA_L-elsbetiae_contig16741.4552.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16741.4552.1 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.310e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    4 AERAAWNSTASCVVVGDVSGRLHFVTGDGTLIFSQPL 114
            AE AAWNSTASCVVVGD SGRLHFVT +GTLIFSQPL
Sbjct:   42 AECAAWNSTASCVVVGDASGRLHFVTPEGTLIFSQPL 78
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BLAST of mRNA_L-elsbetiae_contig16741.4552.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.430e-12
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 AERAAWNSTASCVVVGDVSGRLHFVTGDGTLIFSQPL 114
            AE  AWNSTASCVVVGD SGRLHFVT +GTLIFSQPL
Sbjct:  156 AECGAWNSTASCVVVGDASGRLHFVTAEGTLIFSQPL 192
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BLAST of mRNA_L-elsbetiae_contig16741.4552.1 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.800e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 AAERAAWNSTASCVVVGDVSGRLHFVTGDGTLIFSQPL 114
            AAE   W+STAS +V+GD +G+LHF   DGTL+FSQPL
Sbjct:  114 AAECGDWDSTASYLVIGDCTGKLHFYLADGTLLFSQPL 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16741.4552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQ38_9PHAE1.310e-1289.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU3_ECTSI2.430e-1286.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDW9_9STRA4.800e-763.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16741contigL-elsbetiae_contig16741:605..718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.038752-CDS-L-elsbetiae_contig16741:604..7181622815696.038752-CDS-L-elsbetiae_contig16741:604..718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16741 605..718 +
1691683043.6504037-CDS-L-elsbetiae_contig16741:604..7181691683043.6504037-CDS-L-elsbetiae_contig16741:604..718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16741 605..718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16741.4552.1prot_L-elsbetiae_contig16741.4552.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16741 605..718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16741.4552.1

>prot_L-elsbetiae_contig16741.4552.1 ID=prot_L-elsbetiae_contig16741.4552.1|Name=mRNA_L-elsbetiae_contig16741.4552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
AAERAAWNSTASCVVVGDVSGRLHFVTGDGTLIFSQPL
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mRNA from alignment at L-elsbetiae_contig16741:605..718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16741.4552.1 ID=mRNA_L-elsbetiae_contig16741.4552.1|Name=mRNA_L-elsbetiae_contig16741.4552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=114bp|location=Sequence derived from alignment at L-elsbetiae_contig16741:605..718+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGAGCGCGCGGCGTGGAACTCGACGGCGTCCTGCGTGGTGGTCGG
GGACGTGTCGGGGCGGCTGCACTTCGTCACCGGGGACGGCACCCTCATCT
TCTCGCAGCCCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16741:605..718+

>mRNA_L-elsbetiae_contig16741.4552.1 ID=mRNA_L-elsbetiae_contig16741.4552.1|Name=mRNA_L-elsbetiae_contig16741.4552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig16741:605..718+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGAGCGCGCGGCGTGGAACTCGACGGCGTCCTGCGTGGTGGTCGG
GGACGTGTCGGGGCGGCTGCACTTCGTCACCGGGGACGGCACCCTCATCT
TCTCGCAGCCCCTCGCCGCCGAGCGCGCGGCGTGGAACTCGACGGCGTCC
TGCGTGGTGGTCGGGGACGTGTCGGGGCGGCTGCACTTCGTCACCGGGGA
CGGCACCCTCATCTTCTCGCAGCCCCTC
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