mRNA_L-elsbetiae_contig16740.4550.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16740.4550.1
Unique NamemRNA_L-elsbetiae_contig16740.4550.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16740.4550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16740contigL-elsbetiae_contig16740:781..1182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16740.4550.1prot_L-elsbetiae_contig16740.4550.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16740 784..1164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.8912432-UTR-L-elsbetiae_contig16740:780..7831622815695.8912432-UTR-L-elsbetiae_contig16740:780..783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 781..783 +
1691683043.5600207-UTR-L-elsbetiae_contig16740:780..7831691683043.5600207-UTR-L-elsbetiae_contig16740:780..783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 781..783 +
1622815695.912916-UTR-L-elsbetiae_contig16740:1164..11821622815695.912916-UTR-L-elsbetiae_contig16740:1164..1182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 1165..1182 +
1691683043.5813835-UTR-L-elsbetiae_contig16740:1164..11821691683043.5813835-UTR-L-elsbetiae_contig16740:1164..1182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16740 1165..1182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.9031916-CDS-L-elsbetiae_contig16740:783..11641622815695.9031916-CDS-L-elsbetiae_contig16740:783..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 784..1164 +
1691683043.5707457-CDS-L-elsbetiae_contig16740:783..11641691683043.5707457-CDS-L-elsbetiae_contig16740:783..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16740 784..1164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16740.4550.1

>prot_L-elsbetiae_contig16740.4550.1 ID=prot_L-elsbetiae_contig16740.4550.1|Name=mRNA_L-elsbetiae_contig16740.4550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MGSSKSCRRWARGLVLRSPEGDPGPKMPEGLPERSSPDGLLADGGEGASM
PRRHWILFFTHYLHTHAPTQQPCRSKMKHMQYPHAKNHETKSARFRAEVP
QRGAVRPSSNANQLHRTPRAMWKRKD*
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mRNA from alignment at L-elsbetiae_contig16740:781..1182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16740.4550.1 ID=mRNA_L-elsbetiae_contig16740.4550.1|Name=mRNA_L-elsbetiae_contig16740.4550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig16740:781..1182+ (Laminarionema elsbetiae ELsaHSoW15)
CTTATGGGCTCGTCAAAGTCATGCCGGCGTTGGGCACGTGGGCTTGTACT
TCGTTCTCCGGAAGGAGATCCTGGACCGAAGATGCCCGAAGGGCTCCCCG
AACGATCCTCCCCAGATGGGCTATTAGCCGATGGTGGGGAGGGGGCAAGC
ATGCCAAGGAGACATTGGATTCTTTTTTTCACGCATTATTTGCATACACA
CGCACCAACCCAGCAGCCATGCCGATCGAAAATGAAACACATGCAATACC
CGCACGCGAAAAATCACGAAACAAAAAGCGCACGATTTAGAGCCGAGGTG
CCCCAACGTGGTGCGGTACGACCGAGCTCCAACGCGAACCAACTGCATAG
AACGCCGCGCGCCATGTGGAAACGCAAAGATTGAATCCGAACAATACAGA
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16740:781..1182+

>mRNA_L-elsbetiae_contig16740.4550.1 ID=mRNA_L-elsbetiae_contig16740.4550.1|Name=mRNA_L-elsbetiae_contig16740.4550.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig16740:781..1182+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCGTCAAAGTCATGCCGGCGTTGGGCACGTGGGCTTGTACTTCG
TTCTCCGGAAGGAGATCCTGGACCGAAGATGCCCGAAGGGCTCCCCGAAC
GATCCTCCCCAGATGGGCTATTAGCCGATGGTGGGGAGGGGGCAAGCATG
CCAAGGAGACATTGGATTCTTTTTTTCACGCATTATTTGCATACACACGC
ACCAACCCAGCAGCCATGCCGATCGAAAATGAAACACATGCAATACCCGC
ACGCGAAAAATCACGAAACAAAAAGCGCACGATTTAGAGCCGAGGTGCCC
CAACGTGGTGCGGTACGACCGAGCTCCAACGCGAACCAACTGCATAGAAC
GCCGCGCGCCATGTGGAAACGCAAAGATTGAATGGGCTCGTCAAAGTCAT
GCCGGCGTTGGGCACGTGGGCTTGTACTTCGTTCTCCGGAAGGAGATCCT
GGACCGAAGATGCCCGAAGGGCTCCCCGAACGATCCTCCCCAGATGGGCT
ATTAGCCGATGGTGGGGAGGGGGCAAGCATGCCAAGGAGACATTGGATTC
TTTTTTTCACGCATTATTTGCATACACACGCACCAACCCAGCAGCCATGC
CGATCGAAAATGAAACACATGCAATACCCGCACGCGAAAAATCACGAAAC
AAAAAGCGCACGATTTAGAGCCGAGGTGCCCCAACGTGGTGCGGTACGAC
CGAGCTCCAACGCGAACCAACTGCATAGAACGCCGCGCGCCATGTGGAAA
CGCAAAGATTGA
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