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Homology
BLAST of mRNA_L-elsbetiae_contig1674.4549.1 vs. uniprot
Match: D7G4T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T4_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.940e-18 Identity = 159/477 (33.33%), Postives = 218/477 (45.70%), Query Frame = 3
Query: 99 SSRSRSY-ERFASEREGGRRKDTADEEASTAIPPITNLTSEGGNSCASFPRRFRAKGRSVSSTGQEDAALQGLAGVAVCWLPPXXXXXXXXXXXXXARQLSP----SRIIPPSCTPRVGGSARSPRPPSPLPFPQHRSAGD-GEKKDCGSERPKEKEGESQPRNQ----RDTTAEGVDECEHEIGYRRGIRRSEGEVP--ETT-----RKDS--------SSNFMEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQAAATSPANFISGGGVP-ELRRAGVRNDAASAPNTQSAAGAATFNEAPISIMATAELNGGVLQSSLHVPIEGVDSKDNFGNSSGASCPPPPLSKEARSRAREEK---------KEPAAISTTGSPSEPARRPEYGVAFPVAMHESDHPLPTGR---------------------------TGGTTQQQSEFYFNLGRRMMLDSIE 1343
SS+SR + ER A E++ GR K+ + + AI P T E + PR + KGRS ++ QED AL LA VAV WLPPXXXXXXXXXXXXX S P C V GS +P R+ G G KKD E E S+ ++ R + +D + G R +R + G ETT KD+ SS ++GNR+ E+ GGWA S EGSAA+RRADEVLAR+ ALEV F RVE+Q T+PA + VP + + R+ A+A N+ S N + AE+ + G DS S PPP L +++++R R++K E A++ +G + RR A P AM E P GR +GGT +Q ++FYF++GR M+LD+ +
Sbjct: 5 SSQSRRHRERSAREQDCGRLKNQVVADGTIAISPPTTTEDEAHDLYYRSPRPRKNKGRSTTADSQEDTALLDLAEVAVSWLPPXXXXXXXXXXXXXXXXXXXXXXASSPCPSDCN--VEGSTGTPXX---XXXXCPRNGGPVGGKKDGYGEDSNEHSWASKDSSRWAYGRCQSVARIDGTPPKDGCRGEMRPTGGATAATETTTPVEEHKDTDGRRGGRESSGELQGNRNLEER---GGWAGSDEGSAARRRADEVLARISALEVYFDRVEDQVVRTAPAPAAAEAQVPGRVPLSKGRSSDAAASNSCSNPTLGVGNRGGQGEILLAEVETAQTEGQT-----GGDSSKALARGDRPSSPPP-LPRDSQTRTRKKKDDGEEEVLSSEEYAVANSGLRTLAPRRSNDAAAVPPAMLELS-PSKAGRGTLSRGFEVCDVGNGAGVSRGGNGESSSGGTNEQHNKFYFDVGRTMVLDTFQ 466
BLAST of mRNA_L-elsbetiae_contig1674.4549.1 vs. uniprot
Match: A0A6H5L561_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L561_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.680e-9 Identity = 101/263 (38.40%), Postives = 124/263 (47.15%), Query Frame = 3
Query: 174 EASTAIPPITNLTSEGGNSCASFPRRFRAKGRSVSSTGQEDAALQGLAGVAVCWLPPXXXXXXXXXXXXXARQ----LSPSRIIPPSCTPRVGGSARSPRPPSPLPFPQHRSAGD--GEKKDCGSERPKEKEGESQPRNQRDTTAEGV---------DECEHEIGYRRGIR-RSEGEVPETTRKDS--------SSNFMEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQAAATSPANFISGGGVP 890
E + AI P T E + PR +KGRS + + QED AL LA VAV WLPPXXXXXXXXXXXXX R PS P C V GS + R+ G G+K G + + D +GV D C E+ G +E P KD+ SS ++GNR+ E+ GGWA S EGSAA+RRADEVLAR+ ALE+ F RVE+Q T PA +G P
Sbjct: 4 EGTIAISPPTTTEDEAHDLYYRSPRPHESKGRSTADS-QEDTALLDLAEVAVSWLPPXXXXXXXXXXXXXQRASIXXXXPSSPCPSDCN--VEGSTGTXXX---XXXXXXRNGGPVVGKKDGYGEDSNEYSWASRDSSRWADCRCQGVARVDGTPPKDGCRGEMRPTGGATVATETTNPAEEHKDTDGRRGGEKSSGELQGNRNLEER---GGWAGSDEGSAARRRADEVLARISALEIYFDRVEDQVVRTPPAPATAGAQAP 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_000440.1 |
| Exons | 3 |
| Model size | 1612 |
| Cds size | 651 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815695.801548-UTR-L-elsbetiae_contig1674:13197..13463 | 1622815695.801548-UTR-L-elsbetiae_contig1674:13197..13463 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 13198..13463 - |
| 1691683043.5059495-UTR-L-elsbetiae_contig1674:13197..13463 | 1691683043.5059495-UTR-L-elsbetiae_contig1674:13197..13463 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 13198..13463 - |
| 1622815695.8482797-UTR-L-elsbetiae_contig1674:14497..15028 | 1622815695.8482797-UTR-L-elsbetiae_contig1674:14497..15028 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 14498..15028 - |
| 1691683043.5395458-UTR-L-elsbetiae_contig1674:14497..15028 | 1691683043.5395458-UTR-L-elsbetiae_contig1674:14497..15028 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 14498..15028 - |
| 1622815695.8582342-UTR-L-elsbetiae_contig1674:15322..15486 | 1622815695.8582342-UTR-L-elsbetiae_contig1674:15322..15486 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 15323..15486 - |
| 1691683043.5493526-UTR-L-elsbetiae_contig1674:15322..15486 | 1691683043.5493526-UTR-L-elsbetiae_contig1674:15322..15486 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1674 15323..15486 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815695.8146794-CDS-L-elsbetiae_contig1674:13463..13807 | 1622815695.8146794-CDS-L-elsbetiae_contig1674:13463..13807 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1674 13464..13807 - |
| 1691683043.5202508-CDS-L-elsbetiae_contig1674:13463..13807 | 1691683043.5202508-CDS-L-elsbetiae_contig1674:13463..13807 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1674 13464..13807 - |
| 1622815695.8248136-CDS-L-elsbetiae_contig1674:14190..14497 | 1622815695.8248136-CDS-L-elsbetiae_contig1674:14190..14497 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1674 14191..14497 - |
| 1691683043.529062-CDS-L-elsbetiae_contig1674:14190..14497 | 1691683043.529062-CDS-L-elsbetiae_contig1674:14190..14497 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1674 14191..14497 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1674.4549.1 >prot_L-elsbetiae_contig1674.4549.1 ID=prot_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MEGNRDRREKDRKGGWASSYEGSAAKRRADEVLARLEALEVSFARVEEQA
AATSPANFISGGGVPELRRAGVRNDAASAPNTQSAAGAATFNEAPISIMA
TAELNGGVLQSSLHVPIEGVDSKDNFGNSSGASCPPPPLSKEARSRAREE
KKEPAAISTTGSPSEPARRPEYGVAFPVAMHESDHPLPTGRTGGTTQQQS
EFYFNLGRRMMLDSIE* back to topmRNA from alignment at L-elsbetiae_contig1674:13198..15486- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1674.4549.1 ID=mRNA_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2289bp|location=Sequence derived from alignment at L-elsbetiae_contig1674:13198..15486- (Laminarionema elsbetiae ELsaHSoW15)
GGCAACTCCACCGCGAACGTTACCCCCCCCCTCCCGGCCCACCTCCCTCG
CCGACACTGAATCGGCTGCGAAGAAATATCTCAATTACAAGACGTGGCAG
CTCACGGTCGCGAAGTTATGAGCGATTTGCGAGCGAGCGTGAGGGGGGGA
GGCGAAAGGATACGGTGAGGCGTGAGTGCTGGTGGATTCATGTACGGTAT
ACCGCATCGAAAAAACGGATTGATCTTTATTGCCAAGCATGGAAGCCAAA
CGTTGTCAAGACTCCTCCTCGCGCATGGTTGGGAGCGGGTCTCGACAGTC
GCTTTTTGTTTCTCGAAAATCCAGGCCAGGTACCGTAAGGCAGCACCTAC
AAATACAGGCGCCATCGTAGCAAGCCTTTCTCGAGTGATGCACTCTTCTC
CCCGCCCTCTCCGAAGGCGTACCCTTTCCGATATGTCTTTTCTTCATTCT
CTTTCCAGGCCGACGAGGAAGCCTCTACGGCCATACCACCCATAACCAAC
CTTACCAGCGAGGGTGGCAACAGCTGCGCCTCCTTCCCTCGGCGGTTTCG
AGCGAAGGGCCGATCGGTGTCGTCCACCGGCCAAGAGGATGCTGCTCTTC
AAGGCCTAGCAGGGGTTGCGGTCTGCTGGCTACCCCCGCCTACTCCTCCA
CCCCCGGAGGCACGACGGCGGCGACGAGCGAGACAACTTTCGCCTTCGCG
GATAATCCCACCGTCATGCACTCCCCGTGTAGGCGGCAGCGCACGATCAC
CACGACCACCATCGCCACTACCCTTTCCACAACACCGCAGTGCAGGAGAC
GGCGAGAAGAAAGATTGCGGGAGTGAAAGACCGAAGGAGAAGGAAGGGGA
GAGCCAACCCCGGAACCAGAGGGATACCACTGCAGAGGGCGTTGACGAAT
GTGAGCACGAAATCGGGTACCGCCGTGGCATCCGGCGGAGCGAAGGCGAA
GTGCCGGAAACCACTCGAAAAGATAGCTCGTCTAATTTTATGGAGGGCAA
TCGGGACCGCCGGGAAAAGGATAGGAAAGGAGGCTGGGCCAGCAGTTACG
AGGGGTCGGCGGCCAAGCGAAGAGCGGACGAAGTTCTAGCGCGGCTAGAG
GCCCTAGAAGTTTCATTTGCCCGAGTCGAGGAGCAAGCCGCGGCAACATC
ACCTGCAAACTTTATCAGTGGGGGCGGTGTGCCCGAACTCAGGAGGGCGG
GCGTGCGAAACGATGCAGCGAGCGCACCCAACACCCAGTCGGCTGCTGGC
GCTGCGACCTTCAATGAAGCTCCGATATCGATCATGGCTACGGCAGGTGA
AATATTTGTTTCGCACGTGTAATGCCCTGGAAAAGCTAGACCAACCCTGA
GACGATGTTTGATCTATCTCAGACTCTCAACTTTCATCCAAGTTCCCTTC
CTCCGGCACAAAACTAACAAGTAAATGTCGCGCGAGTAAAGAGTCATGTT
TTCACGGAGGACCATGGTGTCATCAAACCGCTCAGCTAGGAGATAGATAG
AAGGTGAAAGAGGGAGCATTGCTGGCAGAAACTTGAAATGCTGGTTATTT
AACATCTTCAACAGGAAATGAACGGTGCCTCATCTGGGACCGACTAAGCC
CGGCAACGAATGAGTACCCCCCCCCCACCCACCCACCGCCGCCTCTTCAT
TGCCGCCCATTGCGCCAATCCCTCAGCAGAATTAAATGGAGGAGTTCTTC
AATCTAGCCTACATGTTCCCATCGAAGGGGTAGACAGCAAAGACAACTTC
GGTAATTCGAGCGGTGCATCGTGCCCTCCGCCTCCGTTGTCGAAGGAAGC
ACGAAGCCGGGCCCGGGAAGAAAAAAAAGAACCTGCCGCCATCAGCACTA
CTGGTTCTCCCAGTGAGCCAGCACGACGTCCCGAGTATGGCGTCGCGTTT
CCCGTGGCGATGCACGAGTCAGATCACCCTTTGCCAACCGGGCGCACCGG
AGGTACCACACAACAGCAGAGCGAGTTTTATTTTAACTTGGGGAGGCGTA
TGATGCTAGATAGCATCGAATAAGGCCCCGACTGAGTCGGTGTTGTTGCG
GTCGGATATCTGTGCGGTCAGAGAGGGATGCCGAGTTCGCTCCGAAGCGG
ATGTCTTGTAGTGAAAAAGACGGGTAATATTGTTGCTGCACTGCTGTGTC
ATGAACACTAGACTTTAGTCTATCTTATGTAGTCTTGTAGACATGGAGGA
ATATGAAAACAAAACGAGTTTTCGCGTTTTCATCTGCGGCGGGCGGCCGG
TGTGTTCGTTGATTGCCTTTCTTGTTTGTGAGCAGTGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1674:13198..15486- >mRNA_L-elsbetiae_contig1674.4549.1 ID=mRNA_L-elsbetiae_contig1674.4549.1|Name=mRNA_L-elsbetiae_contig1674.4549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig1674:13198..15486- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGCAATCGGGACCGCCGGGAAAAGGATAGGAAAGGAGGCTGGGC
CAGCAGTTACGAGGGGTCGGCGGCCAAGCGAAGAGCGGACGAAGTTCTAG
CGCGGCTAGAGGCCCTAGAAGTTTCATTTGCCCGAGTCGAGGAGCAAGCC
GCGGCAACATCACCTGCAAACTTTATCAGTGGGGGCGGTGTGCCCGAACT
CAGGAGGGCGGGCGTGCGAAACGATGCAGCGAGCGCACCCAACACCCAGT
CGGCTGCTGGCGCTGCGACCTTCAATGAAGCTCCGATATCGATCATGGCT
ACGGCAGATGGAGGGCAATCGGGACCGCCGGGAAAAGGATAGGAAAGGAG
GCTGGGCCAGCAGTTACGAGGGGTCGGCGGCCAAGCGAAGAGCGGACGAA
GTTCTAGCGCGGCTAGAGGCCCTAGAAGTTTCATTTGCCCGAGTCGAGGA
GCAAGCCGCGGCAACATCACCTGCAAACTTTATCAGTGGGGGCGGTGTGC
CCGAACTCAGGAGGGCGGGCGTGCGAAACGATGCAGCGAGCGCACCCAAC
ACCCAGTCGGCTGCTGGCGCTGCGACCTTCAATGAAGCTCCGATATCGAT
CATGGCTACGGCAGAATTAAATGGAGGAGTTCTTCAATCTAGCCTACATG
TTCCCATCGAAGGGGTAGACAGCAAAGACAACTTCGGTAATTCGAGCGGT
GCATCGTGCCCTCCGCCTCCGTTGTCGAAGGAAGCACGAAGCCGGGCCCG
GGAAGAAAAAAAAGAACCTGCCGCCATCAGCACTACTGGTTCTCCCAGTG
AGCCAGCACGACGTCCCGAGTATGGCGTCGCGTTTCCCGTGGCGATGCAC
GAGTCAGATCACCCTTTGCCAACCGGGCGCACCGGAGGTACCACACAACA
GCAGAGCGAGTTTTATTTTAACTTGGGGAGGCGTATGATGCTAGATAGCA
TCGAATAAAATTAAATGGAGGAGTTCTTCAATCTAGCCTACATGTTCCCA
TCGAAGGGGTAGACAGCAAAGACAACTTCGGTAATTCGAGCGGTGCATCG
TGCCCTCCGCCTCCGTTGTCGAAGGAAGCACGAAGCCGGGCCCGGGAAGA
AAAAAAAGAACCTGCCGCCATCAGCACTACTGGTTCTCCCAGTGAGCCAG
CACGACGTCCCGAGTATGGCGTCGCGTTTCCCGTGGCGATGCACGAGTCA
GATCACCCTTTGCCAACCGGGCGCACCGGAGGTACCACACAACAGCAGAG
CGAGTTTTATTTTAACTTGGGGAGGCGTATGATGCTAGATAGCATCGAAT
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