mRNA_L-elsbetiae_contig16736.4546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16736.4546.1
Unique NamemRNA_L-elsbetiae_contig16736.4546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16736.4546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16736contigL-elsbetiae_contig16736:724..1497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size774
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16736.4546.1prot_L-elsbetiae_contig16736.4546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16736 727..1155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.5962496-UTR-L-elsbetiae_contig16736:723..7261622815695.5962496-UTR-L-elsbetiae_contig16736:723..726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16736 724..726 +
1691683043.3631756-UTR-L-elsbetiae_contig16736:723..7261691683043.3631756-UTR-L-elsbetiae_contig16736:723..726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16736 724..726 +
1622815695.621247-UTR-L-elsbetiae_contig16736:1155..14971622815695.621247-UTR-L-elsbetiae_contig16736:1155..1497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16736 1156..1497 +
1691683043.38073-UTR-L-elsbetiae_contig16736:1155..14971691683043.38073-UTR-L-elsbetiae_contig16736:1155..1497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16736 1156..1497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.6102731-CDS-L-elsbetiae_contig16736:726..11551622815695.6102731-CDS-L-elsbetiae_contig16736:726..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16736 727..1155 +
1691683043.37229-CDS-L-elsbetiae_contig16736:726..11551691683043.37229-CDS-L-elsbetiae_contig16736:726..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16736 727..1155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16736.4546.1

>prot_L-elsbetiae_contig16736.4546.1 ID=prot_L-elsbetiae_contig16736.4546.1|Name=mRNA_L-elsbetiae_contig16736.4546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MPHTLFSSADRKTRGREQHETVKTDHHAFETTAPLLLWSITTTQVCVCVC
FFVPFIRAPATRFGVCTTCTCGACFFVQHGISAGVTQEGVNTGTRRSNKR
SSQRFLPLLLFNSSLDANSSMPNGMPIKDQPLFSDNLLAFAL*
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mRNA from alignment at L-elsbetiae_contig16736:724..1497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16736.4546.1 ID=mRNA_L-elsbetiae_contig16736.4546.1|Name=mRNA_L-elsbetiae_contig16736.4546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig16736:724..1497+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATGCCGCACACCCTCTTCTCCTCCGCCGACCGTAAAACACGAGGGAG
AGAGCAGCACGAAACCGTAAAAACAGATCATCACGCTTTTGAAACGACCG
CACCACTACTGTTATGGAGCATCACAACCACACAGGTGTGTGTGTGTGTG
TGTTTTTTCGTCCCGTTTATTCGGGCGCCTGCCACGCGTTTCGGTGTGTG
TACAACATGCACGTGCGGTGCCTGCTTCTTTGTACAGCATGGCATATCCG
CCGGGGTCACACAGGAGGGCGTAAACACAGGTACTCGGAGATCAAACAAA
CGCTCGTCCCAGCGTTTCCTTCCCCTGTTGTTGTTCAATTCGAGCTTGGA
CGCCAACAGCAGCATGCCCAATGGCATGCCCATCAAAGACCAGCCGCTTT
TTTCAGATAACCTGCTCGCTTTTGCTCTCTGACACACACACACACACACA
CAAATAAAACTCGCATCGCCGGCGCATTGGCGCACTAAAGTCAACGCGGT
TCTTCCAAGAACGCGGAGCTTTGGGAACTTTCTACATTGCCAGATCGAGA
GGCGTCTCTGGGAAGAGAGCCTGCCTGCCTGCCGGCGATCTCTCCCAGGC
GAAAGCAAGTCCGCAAAGAAGCGGAAGTACCGTACTACCCCAGTTCGTCG
CGCCCTCCTTCCTCTTCTCTTCTGCTTTGGTTGCTGGTGTGCGTGTATAT
CCATGCATATGCGTATGCCCCGCCCTCCCCTCCCCTCCGCATCGTTTTAC
AATCTAGAGATACAGGCCTTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16736:724..1497+

>mRNA_L-elsbetiae_contig16736.4546.1 ID=mRNA_L-elsbetiae_contig16736.4546.1|Name=mRNA_L-elsbetiae_contig16736.4546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig16736:724..1497+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCACACCCTCTTCTCCTCCGCCGACCGTAAAACACGAGGGAGAGA
GCAGCACGAAACCGTAAAAACAGATCATCACGCTTTTGAAACGACCGCAC
CACTACTGTTATGGAGCATCACAACCACACAGGTGTGTGTGTGTGTGTGT
TTTTTCGTCCCGTTTATTCGGGCGCCTGCCACGCGTTTCGGTGTGTGTAC
AACATGCACGTGCGGTGCCTGCTTCTTTGTACAGCATGGCATATCCGCCG
GGGTCACACAGGAGGGCGTAAACACAGGTACTCGGAGATCAAACAAACGC
TCGTCCCAGCGTTTCCTTCCCCTGTTGTTGTTCAATTCGAGCTTGGACGC
CAACAGCAGCATGCCCAATGGCATGCCCATCAAAGACCAGCCGCTTTTTT
CAGATAACCTGCTCGCTTTTGCTCTCTGAATGCCGCACACCCTCTTCTCC
TCCGCCGACCGTAAAACACGAGGGAGAGAGCAGCACGAAACCGTAAAAAC
AGATCATCACGCTTTTGAAACGACCGCACCACTACTGTTATGGAGCATCA
CAACCACACAGGTGTGTGTGTGTGTGTGTTTTTTCGTCCCGTTTATTCGG
GCGCCTGCCACGCGTTTCGGTGTGTGTACAACATGCACGTGCGGTGCCTG
CTTCTTTGTACAGCATGGCATATCCGCCGGGGTCACACAGGAGGGCGTAA
ACACAGGTACTCGGAGATCAAACAAACGCTCGTCCCAGCGTTTCCTTCCC
CTGTTGTTGTTCAATTCGAGCTTGGACGCCAACAGCAGCATGCCCAATGG
CATGCCCATCAAAGACCAGCCGCTTTTTTCAGATAACCTGCTCGCTTTTG
CTCTCTGA
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