mRNA_L-elsbetiae_contig16725.4541.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16725.4541.1
Unique NamemRNA_L-elsbetiae_contig16725.4541.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: D8LSQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ3_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.150e-57
Identity = 97/137 (70.80%), Postives = 105/137 (76.64%), Query Frame = 2 
Query:    5 DVDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLPAGEALK 415
            DVD+YRVVLIFKDP EALVSRYFYNHCKN+RGA CG+T A FPSLESYAEESGDRLHMEAFYDNYC+PATV GA A                        ++ RRNYPVVCVNYHKMWDNKEALV++LGLPAGEA K
Sbjct:  513 DVDNYRVVLIFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPATVAGAGAGASG------------------AIKKERRNYPVVCVNYHKMWDNKEALVKALGLPAGEASK 631
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: A0A7S0TAQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAQ6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.490e-26
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 2 
Query:    2 QDVDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLPAGEA 409
            +D+D++RV+ IFKDPVEALVSRY Y HC ++ G DCG  +A FP L++YA    DR+ + +F+D Y DP                                    R++PV+ +NYHK+WDN  AL+R+LGLP   A
Sbjct:   39 RDLDAFRVLFIFKDPVEALVSRYGYGHCLHL-GGDCGPNEAAFPKLDAYAASGRDRMGILSFFDAYVDPPPS---------------------------------RSFPVLLLNYHKLWDNLPALMRALGLPPDAA 140
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: A0A7S2RTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTZ4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.370e-23
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 2 
Query:    5 DVDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLP 397
            D+D YRV+ I+KDP+EALVSRY Y HC +I+G DCG  ++ +P L+ YA    DR+ + A + NY  P+ +                                 R++PVV VNYHK+WDN  AL+++LGLP
Sbjct:   24 DLDKYRVLYIYKDPIEALVSRYGYGHCMHIQG-DCGEERS-WPKLDKYAAAQQDRMKLMAHFQNYMHPSEM---------------------------------RSFPVVAVNYHKLWDNLPALMQALGLP 119
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: A0A7S4A8H3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8H3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.460e-22
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 2 
Query:    5 DVDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLPAGEA 409
            D+D YRV+ IFKDPVEA+VSR+ Y HCK++ G DCG  Q+ FP L+ YA++  DR+ + AF++ Y  P                                    + YP+V +NYHK+W N+EA++ +LGLPA  A
Sbjct:  295 DLDDYRVLYIFKDPVEAMVSRFGYGHCKHLDG-DCGVEQS-FPKLDVYAQQGVDRMGLLAFFEAYTSP------------------------------------QKYPIVALNYHKLWQNREAVMSALGLPASLA 391
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: A0A7S2DQ38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ38_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.780e-21
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2 
Query:    5 DVDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLPAGEA 409
            D++ YRVV ++KDPVEALVSRY + HC +I+G DCG  +AQ+P L+ YA++  DR+ ++  ++ +  P                                    R +P+V +NYH++WDN  A++ +LGLPA  A
Sbjct:   65 DLNEYRVVYMYKDPVEALVSRYGWGHCNHIQG-DCGDAEAQWPKLDKYAKKQVDRMRLKDHFNAFHHPEEP---------------------------------REFPIVAINYHRLWDNIPAVLTALGLPASLA 165
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BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Match: A0A7S3NGV2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGV2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 2 
Query:    8 VDSYRVVLIFKDPVEALVSRYFYNHCKNIRGADCGATQAQFPSLESYAEESGDRLHMEAFYDNYCDPATVDGAAAXXXXXXXXXXXXXXXXXXXXXXGTRRGRRNYPVVCVNYHKMWDNKEALVRSLGLP 397
            +D YR++ IFKDPVEALVSRY Y HC ++ G +CG  +  FP L++YA    D +++ +F+ NY  P                                    R++P++ +NYHK+WDN +AL+ +LGLP
Sbjct:  336 LDDYRLLFIFKDPVEALVSRYGYGHCLHL-GGNCGTNERTFPKLDAYARRGIDNMNILSFFKNYVTP---------------------------------NPNRSFPIILLNYHKLWDNLDALMAALGLP 431
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16725.4541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSQ3_ECTSI3.150e-5770.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0TAQ6_9STRA1.490e-2640.44Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
A0A7S2RTZ4_9STRA3.370e-2339.69Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4A8H3_9STRA4.460e-2239.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DQ38_9STRA5.780e-2135.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NGV2_9STRA2.580e-2036.15Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16725contigL-elsbetiae_contig16725:76..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.3303864-CDS-L-elsbetiae_contig16725:76..3491622815695.3303864-CDS-L-elsbetiae_contig16725:76..349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16725 77..349 -
1691683043.2658718-CDS-L-elsbetiae_contig16725:76..3491691683043.2658718-CDS-L-elsbetiae_contig16725:76..349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16725 77..349 -
1622815695.342306-CDS-L-elsbetiae_contig16725:2913..30571622815695.342306-CDS-L-elsbetiae_contig16725:2913..3057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16725 2914..3057 -
1691683043.2742307-CDS-L-elsbetiae_contig16725:2913..30571691683043.2742307-CDS-L-elsbetiae_contig16725:2913..3057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16725 2914..3057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16725.4541.1prot_L-elsbetiae_contig16725.4541.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16725 77..3057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16725.4541.1

>prot_L-elsbetiae_contig16725.4541.1 ID=prot_L-elsbetiae_contig16725.4541.1|Name=mRNA_L-elsbetiae_contig16725.4541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
ARCGQLSRGADLQGPRRGSRQPILLQPLQEHQGRGLRGDPGAVPESRKLR
RGERRPPPHGGLLRQLLRPRHRRRGSRRRRRRRRCRCRRQQRQQRQQRRR
DETGAAQLPRGVRELPQDVGQQGGPGQVAGPAGGRGFEG
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mRNA from alignment at L-elsbetiae_contig16725:76..3057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16725.4541.1 ID=mRNA_L-elsbetiae_contig16725.4541.1|Name=mRNA_L-elsbetiae_contig16725.4541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2982bp|location=Sequence derived from alignment at L-elsbetiae_contig16725:76..3057- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGATGTGGACAGCTATCGCGTGGTGCTGATCTTCAAGGACCCCGTCG
AGGCTCTCGTCAGCCGATACTTCTACAACCATTGCAAGAACATCAGGGGC
GCGGATTGCGGGGCGACCCAGGCGCAGTTCCCGAGTCTCGAAAGGTGAAA
GAGAAGAGCTGGCGTTTTGATTGTTTGTTGAGGGCGCTGTTTTGGATCTT
TTCAGCCTCGAATTAATTATCTTAACCGACCTTTGTTTTTTACAATTTTA
ACCCCTCTGGGACTAGGCTCGTCACAGGCCGCAAGGCGAGCAGCCCAGAA
AACGCGGCGGGACTATTAAAAAAAACAGGCCCGCAGCGCAGATACATGCG
AGAGGGTTCTCTGTTCTCTGCTCTTCTGTTTGCAGAAGTCAACCCAGCAG
CAAAACACGCACCGCGGCCGTGTCGCCGCCCGGCAACACACTGGGGACGT
CTGTTGGCACACTAGAAAGCCTCATCGGCCCTGAACACATCACTGCTAGT
GTTCGCTCGAAGTTTTTTCTCCTTTGTAGCGCTGTCCCGCGCCCTGGACT
CTTCTGAAAGCACTCTAAATTCAGTATATACCATATAGTCGCAAAAAATG
ATCACTAAATTGGCACCGAAGTCTCCTGCGGTAATAGCGTACTTATCCAC
TTCTCGGGGGGCCGCCGGATAGAGTCCCGCCTCTGGCGCTCGGTTACTTT
GTAAATAACACCGTAGGTGACACAAGATACCACACCCCCTGGACCAAATT
TTAGAGCTCCATTACTCCGTAACGAAGGTGCCAGCACCAAACGAAACATT
TTCGGACAGCCCTCGGCTAGATCTTTCCAACGCTACCCTTTTTGGCAGTG
GCGCTCTTCTTGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGG
TGTGGTATCTTGTGTCACCTACGGTTCCCAACGGCAACCAGCAGGCAGAT
CAATCACACCGGTGCTGGTTTAGATAGACGGAAATCGAAGAGGTGTTTGG
CGATGCTGTTGTTGTAGATATGTACTTGTGCTCGTGGTGTGGGTTGTGTC
TGTATGGTGTACATGATGCGTCATGTGATGTGTGGGATGAGAGCAAAACC
GATTTCGTTTCGTGAAATATTTCAACCCCAACTCCCAAATGCAACAGCCA
AGCAGCAGCGGCAGCGCGGCGGCGGCAGCTGCAGCAGGCTGGCTGAGACG
ACACATAGCGTTACAGTCCTGCTGCTGCTGTTACCACCCCATCCTGGGTG
GCCATACCGGTTGTTCATATGTTTTCGTCCCGATGTGCCGGCTAGCCCCC
AGGTCCGCACAAAACCAGGCATCTCAATGATCATTTTTTGTAAATCACCA
AAACCCGCTTCAAGTCTCAGAAGGGTTATAAGCGTCATTCGGCGATCGAT
TTTTGTTTTGGCGCTCGAGCGTCAGGTGAAAGTAAGTGAGATGCGATTAA
ACTTTTGGGCGGGGTAATGTTTTGTCACAGGCCTTTCCTGTTCTCGTTGA
TGGACTAGTCTCCTTTTAAAATAAAACAAAGAATCAAAGATGGAACCTAA
CCCATACTAGTCTCATTTTGTGCGCGAGCATGAATGAGTATCTCGTGGAA
TGGCGGAGCCCCAGAATAGGGCGCGATGCGTCCAGGCAAAGTGTGAGTAT
TTTAGGCTACACAAGGTACCACACTCCCTGGGGACAGATTTTCGAAGCTC
GAAGCTCGATTCCTCCCCAGCAAGAGGAGTGCCAGCGGTGCCGAGAGGGG
GTCGTGTTGGAAACATCTAGTCGAGGGCTGCCTGAAAATGTGTCGTTTGG
TGCTGGCACCCTCTTCCTTACGGAGTAATGGAGCCCCAAACGTCGGTCCA
GGGGGGGTGGTATCTTGTGTCACCTACGGTAAGAGAGTCACAGAGATCGT
CAAAAGGTGCAACAAACGCTCTCTCGCGCATTGTTGAATGGCCTCAGTTT
CAAAACGGCAGATTTTCTAATGCTCTACAGTATGATCCAAGACAACGAAA
CAAATTTACCGCACGAAACAAGGAAAACTGCGGCGCGCTTCGAAAGAGCT
AGATTTCCTCGAGCTCGGCCTGATGTAGGAGACAAATTTAGAAGTTTGTC
TTGGATATATACATGCATGTATCATGGGAAGTATGTGTAAAAATCCAAAG
AAGTTTCAGCGCTGGTTTTTAATTTCATGTATACAAATGTCAGCAGTCTG
CGCCCGGCCTGCGCGAAATTCTTTCCAGTGGGACAGCTCTTGTAGGCATT
TTTTTCTTTTTTCTTTTCTGTTTTTTTTTGTGAGAGGGCCAATGCCGACA
CTGCAGTGGCTGGCGCTGGAGATGCTAGGTATGTAGATCGAGAGGTATCT
TCAGACACGGAACCGATCTTATCGTTCGGTCCGGCAGTGTGACCGAATTC
CCATTTCGTTGCGAAGCAGAAGTGCAGTCGAGCTCTGAACGTCAGCCTAT
TGCAGCGGGGGAGAGGGAACACTCCGGAGTATCAACTTTGCGTTGTCGAA
GGCCTCACCAGCGCCGCATACCTTTGTAGCTGTCTCTGTTGCTGCTGCTG
CTGCTGCTGCTGCCATCACCACCCCGTTTTTGTTGGACCTCAGCTAAATT
GATACCGCACACGCGCTCGGCTGCCCGTGTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGTTTGTTTCGCCGGGGC
GCACGCAGTTACGCCGAGGAGAGCGGCGACCGCCTCCACATGGAGGCCTT
CTACGACAATTACTGCGACCCCGCCACCGTCGACGGGGCAGCCGCCGCCG
CCGCCGCCGCCGCCGCTGCCGCTGCCGCCGGCAGCAACGGCAGCAGCGGC
AGCAGCGGCGGCGGGACGAGACGGGGGCGGCGCAACTACCCCGTGGTGTG
CGTGAACTACCACAAGATGTGGGACAACAAGGAGGCCCTGGTCAGGTCGC
TGGGCCTGCCGGCGGGAGAGGCTTTGAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16725:76..3057-

>mRNA_L-elsbetiae_contig16725.4541.1 ID=mRNA_L-elsbetiae_contig16725.4541.1|Name=mRNA_L-elsbetiae_contig16725.4541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig16725:76..3057- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGATGTGGACAGCTATCGCGTGGTGCTGATCTTCAAGGACCCCGTCG
AGGCTCTCGTCAGCCGATACTTCTACAACCATTGCAAGAACATCAGGGGC
GCGGATTGCGGGGCGACCCAGGCGCAGTTCCCGAGTCTCGAAAGGCAAGA
TGTGGACAGCTATCGCGTGGTGCTGATCTTCAAGGACCCCGTCGAGGCTC
TCGTCAGCCGATACTTCTACAACCATTGCAAGAACATCAGGGGCGCGGAT
TGCGGGGCGACCCAGGCGCAGTTCCCGAGTCTCGAAAGTTACGCCGAGGA
GAGCGGCGACCGCCTCCACATGGAGGCCTTCTACGACAATTACTGCGACC
CCGCCACCGTCGACGGGGCAGCCGCCGCCGCCGCCGCCGCCGCCGCTGCC
GCTGCCGCCGGCAGCAACGGCAGCAGCGGCAGCAGCGGCGGCGGGACGAG
ACGGGGGCGGCGCAACTACCCCGTGGTGTGCGTGAACTACCACAAGATGT
GGGACAACAAGGAGGCCCTGGTCAGGTCGCTGGGCCTGCCGGCGGGAGAG
GCTTTGAAGGTTTACGCCGAGGAGAGCGGCGACCGCCTCCACATGGAGGC
CTTCTACGACAATTACTGCGACCCCGCCACCGTCGACGGGGCAGCCGCCG
CCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCCGGCAGCAACGGCAGCAGC
GGCAGCAGCGGCGGCGGGACGAGACGGGGGCGGCGCAACTACCCCGTGGT
GTGCGTGAACTACCACAAGATGTGGGACAACAAGGAGGCCCTGGTCAGGT
CGCTGGGCCTGCCGGCGGGAGAGGCTTTGAAGGT
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