mRNA_L-elsbetiae_contig16723.4539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16723.4539.1
Unique NamemRNA_L-elsbetiae_contig16723.4539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JPF0_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF0_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 9.230e-70
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            D +EEK+R W ++AR RF ATKIGVSGSMIQ QA +IAAQM KT+F+AT GWLHRFLKRY++T V LHGEAGDVDK KVAEEIERIREQL+EFDVEFIFNMDETG F+RCFP+GTYV R E AAGVNSKTARG
Sbjct:   64 DEVEEKLRKWIKIARARFNATKIGVSGSMIQAQALEIAAQMGKTNFRATKGWLHRFLKRYSFTRVQLHGEAGDVDKQKVAEEIERIREQLQEFDVEFIFNMDETGLFFRCFPKGTYVTRGEAAAGVNSKTARG 196          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: D7G3D6_ECTSI (Similar to Tigger transposable element-derived protein 6, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D6_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.240e-67
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 1
Query:   16 KVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPR 339
            KVRHWFQVARERFKATKIGVSGSM+QV+ATKIAAQM KTDFKATNGWLHRFLKRYNYTHV LHGEAGDVD AKVAEEIE+IREQ KEFDVEFIFNMDETG FYRCFPR
Sbjct:   12 KVRHWFQVARERFKATKIGVSGSMVQVRATKIAAQMNKTDFKATNGWLHRFLKRYNYTHVKLHGEAGDVDTAKVAEEIEQIREQHKEFDVEFIFNMDETGLFYRCFPR 119          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.410e-66
Identity = 106/133 (79.70%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            D +EEK+R W ++AR RF ATK+GVSGSMIQ QA KIAAQM KT+FKATNGWL+RFLKRY++THV LHGEAGDVDK KVAEEIERIREQL+EFDV+FIFNMDE G F+RCFPRGTYV R E AAGVNSKTARG
Sbjct:   64 DEVEEKLRKWIKIARARFDATKMGVSGSMIQAQALKIAAQMGKTNFKATNGWLYRFLKRYSFTHVQLHGEAGDVDKQKVAEEIERIREQLQEFDVDFIFNMDEMGLFFRCFPRGTYVTRGEAAAGVNSKTARG 196          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5K051_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K051_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.480e-58
Identity = 97/132 (73.48%), Postives = 107/132 (81.06%), Query Frame = 1
Query:   13 EKVRHWF---QVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            EK+RH        R    ATKIGVSGSMIQ QA KI AQM K +FKATNGWLHRFLKRY++THV LHGEAGDVDK KVAEEIERIR+ L+EFDVEFIF+MDETG F+RCFPRGTYV + E AAGVNS+T RG
Sbjct:   44 EKIRHMELNQDALRAPKTATKIGVSGSMIQAQALKIVAQMGKNNFKATNGWLHRFLKRYSFTHVQLHGEAGDVDKQKVAEEIERIRKHLQEFDVEFIFDMDETGLFFRCFPRGTYVTKGEAAAGVNSETVRG 175          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5K549_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K549_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.190e-57
Identity = 103/170 (60.59%), Postives = 116/170 (68.24%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFK-------------------------------------ATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            D +EEK+R W ++ARER                                       ATKIGVSGSMIQ QA KIAAQM K +FKATNGWLHRFLKRY++T+V L G+AGDVDK KVAEEIERIREQL+EFDVEFIFNMDE G F+RCFPRGT+V R + AAGVNSKTARG
Sbjct:   47 DEVEEKLRKWIKIARERSNVSTYLALVMCWSGYNLVVYTPTPFRPYTSSHSRPSCWATKIGVSGSMIQAQALKIAAQMGKANFKATNGWLHRFLKRYSFTYVQLRGKAGDVDKQKVAEEIERIREQLQEFDVEFIFNMDEMGLFFRCFPRGTHVTRGQAAAGVNSKTARG 216          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.440e-57
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            D LE+++  W +VAR RF+ TKIG+SG MIQ QATK A++M K DF A+ GWLHRFLKRY + H+NLHGEAGDVDK K  E+I +IREQL+ FDVE IFNMDETG F+RCFPRGTYV R E AAGVN KTARG
Sbjct:   30 DDLEKRLLQWIKVARARFETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDKTKYEEQIAKIREQLEGFDVELIFNMDETGLFFRCFPRGTYVTRAEDAAGVNRKTARG 162          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.950e-56
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            D LE+++  W +VAR RF+ TKIG+SG MIQ QATK A++M K DF A+ GWLHRFLKRY + H+NLHGEAGDVDK K  E+I +IREQL+ FDVE IFNMDETG F+RCFPRGTYV R E AAGVN KTARG
Sbjct:  235 DDLEKRLLQWIKVARARFETTKIGLSGIMIQTQATKFASEMGKKDFTASKGWLHRFLKRYGFKHINLHGEAGDVDKTKYEEQIAKIREQLEGFDVELIFNMDETGLFFRCFPRGTYVTRAEDAAGVNRKTARG 367          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5KMN9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN9_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.560e-54
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 1
Query:   55 KATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTAR 396
            +AT+IG+SGSMIQ QA KIAAQM KT+FKATNGWLHRFLKR + THV LH EAGDVDK KVAEE +RIREQL+EFDVEF F MDETG F+RCFPRGTYV R E AAG+NSKTAR
Sbjct:   73 EATEIGLSGSMIQAQALKIAAQMGKTNFKATNGWLHRFLKRDSSTHVQLH-EAGDVDKQKVAEETKRIREQLQEFDVEFTFKMDETGLFFRCFPRGTYVTRGEAAAGINSKTAR 185          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JWH8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.410e-52
Identity = 85/105 (80.95%), Postives = 91/105 (86.67%), Query Frame = 1
Query:   85 MIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRGTYVPREETAAGVNSKTARG 399
            MIQ QA KIAAQM KT+FKATNGWLHRFLKRY++THV LHGEAGDVDK KVAEEI+RIREQL+ FDVEFIF MDETG F+R FPRGTYV R E AA VN KTARG
Sbjct:    1 MIQAQALKIAAQMGKTNFKATNGWLHRFLKRYSFTHVQLHGEAGDVDKQKVAEEIDRIREQLQVFDVEFIFVMDETGLFFRYFPRGTYVTRGEAAAAVNCKTARG 105          
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.290e-52
Identity = 87/114 (76.32%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATNGWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFNMDETGFFYRCFPRG 342
            D +EEK+R W ++AR RF  TKIGVSGSMIQ QA KIAAQM KT+FKAT+GWLHRFL RY++THV LHGEAGDVDK KVAEEIERIREQL+EFDVEFI N+ ET  F+RCFPRG
Sbjct:  157 DEVEEKLRKWIKIARARFNETKIGVSGSMIQAQALKIAAQMGKTNFKATSGWLHRFLIRYSFTHVQLHGEAGDVDKQKVAEEIERIREQLQEFDVEFILNIVETRLFFRCFPRG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16723.4539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPF0_9PHAE9.230e-7078.95HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
D7G3D6_ECTSI2.240e-6792.59Similar to Tigger transposable element-derived pro... [more]
A0A6H5JNS8_9PHAE1.410e-6679.70HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K051_9PHAE1.480e-5873.48HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K549_9PHAE1.190e-5760.59HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEY2_9PHAE2.440e-5769.17HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE1.950e-5669.17HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KMN9_9PHAE1.560e-5478.95HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JWH8_9PHAE1.410e-5280.95HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JT55_9PHAE3.290e-5276.32HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16723contigL-elsbetiae_contig16723:1278..1929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.9
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog7029.ACYPI001557-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
EggNOG OGs38EWM@33154,3BGSJ@33208,3D2I5@33213,3SQNX@50557,4226T@6656,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.1814575-CDS-L-elsbetiae_contig16723:1277..16191622815695.1814575-CDS-L-elsbetiae_contig16723:1277..1619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 1278..1619 -
1691683043.1934667-CDS-L-elsbetiae_contig16723:1277..16191691683043.1934667-CDS-L-elsbetiae_contig16723:1277..1619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 1278..1619 -
1622815695.1948068-CDS-L-elsbetiae_contig16723:1872..19291622815695.1948068-CDS-L-elsbetiae_contig16723:1872..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 1873..1929 -
1691683043.2048814-CDS-L-elsbetiae_contig16723:1872..19291691683043.2048814-CDS-L-elsbetiae_contig16723:1872..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16723 1873..1929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16723.4539.1prot_L-elsbetiae_contig16723.4539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16723 1278..1929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16723.4539.1

>prot_L-elsbetiae_contig16723.4539.1 ID=prot_L-elsbetiae_contig16723.4539.1|Name=mRNA_L-elsbetiae_contig16723.4539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
DALEEKVRHWFQVARERFKATKIGVSGSMIQVQATKIAAQMKKTDFKATN
GWLHRFLKRYNYTHVNLHGEAGDVDKAKVAEEIERIREQLKEFDVEFIFN
MDETGFFYRCFPRGTYVPREETAAGVNSKTARG
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mRNA from alignment at L-elsbetiae_contig16723:1278..1929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16723.4539.1 ID=mRNA_L-elsbetiae_contig16723.4539.1|Name=mRNA_L-elsbetiae_contig16723.4539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=652bp|location=Sequence derived from alignment at L-elsbetiae_contig16723:1278..1929- (Laminarionema elsbetiae ELsaHSoW15)
GACGCGCTGGAAGAGAAAGTACGCCACTGGTTCCAAGTCGCACGAGAACG ATTCAAAGTAAGTGTTGTTGGATGCAGCTGTTTGAATGAGTCATGTGCGG TCAGGATATTTACCCTGTTGTTTGTCGACACCCTTCCGCCTCTCCCCCAA CGCTATCCCCGCCCAACCATGGCCAATCTGCTAGGTTGTATGGTCGATAA GGTGCAACTAGCCAGAAAATCCGCTACAACACCACCATAGAATATTGGCC GAATTGAAACCGCTGCTGTTTTTGTTTTTTTGTCGTATTGTTTCGTTCAT TTTGATGCAGGCAACCAAGATTGGTGTGAGCGGTTCCATGATCCAGGTCC AGGCCACCAAGATCGCCGCGCAGATGAAGAAGACCGACTTCAAGGCGACC AACGGCTGGCTACACCGCTTCCTCAAACGCTACAACTACACTCACGTCAA CTTGCACGGAGAAGCTGGCGATGTGGACAAGGCGAAGGTGGCCGAGGAGA TAGAGCGGATTCGGGAGCAGCTTAAGGAGTTCGATGTCGAGTTCATCTTC AACATGGACGAGACGGGATTTTTCTACCGCTGCTTCCCGCGAGGTACATA CGTGCCGAGGGAGGAGACCGCCGCTGGTGTCAACAGCAAAACCGCGCGGG GT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16723:1278..1929-

>mRNA_L-elsbetiae_contig16723.4539.1 ID=mRNA_L-elsbetiae_contig16723.4539.1|Name=mRNA_L-elsbetiae_contig16723.4539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig16723:1278..1929- (Laminarionema elsbetiae ELsaHSoW15)
GACGCGCTGGAAGAGAAAGTACGCCACTGGTTCCAAGTCGCACGAGAACG
ATTCAAAGACGCGCTGGAAGAGAAAGTACGCCACTGGTTCCAAGTCGCAC
GAGAACGATTCAAAGCAACCAAGATTGGTGTGAGCGGTTCCATGATCCAG
GTCCAGGCCACCAAGATCGCCGCGCAGATGAAGAAGACCGACTTCAAGGC
GACCAACGGCTGGCTACACCGCTTCCTCAAACGCTACAACTACACTCACG
TCAACTTGCACGGAGAAGCTGGCGATGTGGACAAGGCGAAGGTGGCCGAG
GAGATAGAGCGGATTCGGGAGCAGCTTAAGGAGTTCGATGTCGAGTTCAT
CTTCAACATGGACGAGACGGGATTTTTCTACCGCTGCTTCCCGCGAGGTA
CATACGTGCCGAGGGAGGAGACCGCCGCTGGTGTCAACAGCAAAACCGCG
CGGGGTGCAACCAAGATTGGTGTGAGCGGTTCCATGATCCAGGTCCAGGC
CACCAAGATCGCCGCGCAGATGAAGAAGACCGACTTCAAGGCGACCAACG
GCTGGCTACACCGCTTCCTCAAACGCTACAACTACACTCACGTCAACTTG
CACGGAGAAGCTGGCGATGTGGACAAGGCGAAGGTGGCCGAGGAGATAGA
GCGGATTCGGGAGCAGCTTAAGGAGTTCGATGTCGAGTTCATCTTCAACA
TGGACGAGACGGGATTTTTCTACCGCTGCTTCCCGCGAGGTACATACGTG
CCGAGGGAGGAGACCGCCGCTGGTGTCAACAGCAAAACCGCGCGGGGT
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