mRNA_L-elsbetiae_contig16716.4535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.460e-39 Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 3 Query: 18 QELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQV 272 +EL DD EYAEIK DVVEEC+QYGKVKSAEVPRPE+GKEVLG+GEIFVEFEDVAGATKGR+ALAGRKFGGKAV+AT+YP DLFQ+ Sbjct: 963 EELADDTEYAEIKGDVVEECEQYGKVKSAEVPRPEDGKEVLGLGEIFVEFEDVAGATKGRNALAGRKFGGKAVKATYYPLDLFQM 1047
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A8K1C5Z4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Z4_PYTOL) HSP 1 Score: 90.5 bits (223), Expect = 3.250e-19 Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 3 Query: 3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLF 266 N+ EL DD EYA++K DV EEC+++G V + E+PRP++G++V GVG I+V+FED + + AL+GRKFGGK V+ T++P F Sbjct: 622 NMVSEDELRDDEEYADLKEDVEEECKRFGLVVAMEIPRPKDGEDVPGVGNIYVQFEDASQSGAALKALSGRKFGGKIVQVTYFPMTKF 709
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A024TKE3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKE3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 7.840e-19 Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 3 Query: 21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275 ELEDD E+A++K D+ EEC ++GKV + EVPRP+ G+ +LGVG++FV FE V GA K AL GRKFGG V+ + F+ + Sbjct: 451 ELEDDDEFADLKEDIEEECNKFGKVVALEVPRPKTGETILGVGKVFVRFESVEGAEKATKALTGRKFGGNIVQVEYMSLAKFETQ 535
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A9S9L1_PHYPA (Splicing factor U2af large subunit (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S9L1_PHYPA) HSP 1 Score: 87.4 bits (215), Expect = 3.600e-18 Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 3 Query: 21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQV 272 EL+DD EY +I D+ EEC +YG + +PRP +G++V GVG++FVE+ D AGA K + +L GR+FGG +V A +YP + F + Sbjct: 415 ELKDDEEYQDILEDMKEECGKYGNLVKLVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPAEKFSI 498
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A6G0WM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM79_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.410e-18 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275 N+ ELEDD E+A++K D+ EEC ++GKV + E+PRP + VLGVG++FV FED++GA AL GRKFGG V ++ F+ + Sbjct: 275 NMVQASELEDDDEFADLKEDIEEECNKFGKVVALEIPRPNGNETVLGVGKVFVRFEDISGAQAAIKALKGRKFGGNIVEVSYMSLAKFETQ 365
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A2K1JH19_PHYPA (Splicing factor U2af large subunit n=12 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH19_PHYPA) HSP 1 Score: 86.7 bits (213), Expect = 7.110e-18 Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLF 266 EL+DD EY +I D+ EEC +YG + +PRP +G++V GVG++FVE+ D AGA K + +L GR+FGG +V A +YP + F Sbjct: 474 ELKDDEEYQDILEDMKEECGKYGNLLRVVIPRPRDGEDVPGVGKVFVEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKF 555
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A7S0H2C3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H2C3_MICPS) HSP 1 Score: 81.3 bits (199), Expect = 7.820e-18 Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 3 Query: 21 ELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEE-GKE--VLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275 EL DD E+A+I+ DV +EC ++G V +PRP G E V G+G+ FV +E VAGAT RDAL GRKFGGK V A F D F+ R Sbjct: 37 ELRDDGEFADIEEDVRDECGKFGSVVEVAIPRPRPPGDETPVAGLGKAFVRYETVAGATAARDALHGRKFGGKVVNADFIDVDAFERR 124
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A485KWN6_9STRA (Aste57867_12612 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWN6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 9.640e-18 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275 N+ ELEDD E+A++K D+ EEC ++GKV + E+PRP + VLG+G++FV FEDV+GA AL GRKFGG V ++ F+ + Sbjct: 454 NMVQASELEDDEEFADLKEDIEEECNKFGKVVALEIPRPNGEEAVLGIGKVFVRFEDVSGAEAATKALTGRKFGGNIVDVSYMSLAKFETQ 544
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: W4G670_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G670_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.790e-17 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQVR 275 N+ EL DD E+A++K D+ EEC ++GKV + E+PRP+ G+ VLGVG++FV F+ VAGA AL GRKFGG V+ + F+ + Sbjct: 443 NMVQPSELADDDEFADLKEDIEEECNKFGKVVALEIPRPKAGETVLGVGKVFVRFDAVAGAQAATKALTGRKFGGNIVQVAYLSLAKFETQ 533
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Match: A0A1V9YMP3_9STRA (Splicing factor U2af large subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP3_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.310e-17 Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 3 Query: 3 NLWLHQELEDDAEYAEIKTDVVEECQQYGKVKSAEVPRPEEGKEVLGVGEIFVEFEDVAGATKGRDALAGRKFGGKAVRATFYPHDLFQ 269 N+ ELEDD+E+A++K D+ EEC ++GKV++ +PRP +G + GVG++FV FE+VAGA AL GRKFGG V ++ + F+ Sbjct: 432 NMVQESELEDDSEFADLKLDIDEECNKFGKVEALVIPRPSDG--IPGVGKVFVRFENVAGAVAATKALTGRKFGGNVVAVSYMSVEAFE 518 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16716.4535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16716.4535.1 >prot_L-elsbetiae_contig16716.4535.1 ID=prot_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp GIYGFTRSLKTTRSMQRSRPTSSRNASSTEKSRARKCPGRRRVRRFSASAback to top mRNA from alignment at L-elsbetiae_contig16716:212..1222- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16716.4535.1 ID=mRNA_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1011bp|location=Sequence derived from alignment at L-elsbetiae_contig16716:212..1222- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16716:212..1222- >mRNA_L-elsbetiae_contig16716.4535.1 ID=mRNA_L-elsbetiae_contig16716.4535.1|Name=mRNA_L-elsbetiae_contig16716.4535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig16716:212..1222- (Laminarionema elsbetiae ELsaHSoW15)back to top |