mRNA_L-elsbetiae_contig1667.4496.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1667.4496.1
Unique NamemRNA_L-elsbetiae_contig1667.4496.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1667.4496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1667contigL-elsbetiae_contig1667:1258..2492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size409
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1667.4496.1prot_L-elsbetiae_contig1667.4496.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1667 1258..2440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.3292894-CDS-L-elsbetiae_contig1667:1257..14461622815692.3292894-CDS-L-elsbetiae_contig1667:1257..1446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 1258..1446 -
1691683041.4705782-CDS-L-elsbetiae_contig1667:1257..14461691683041.4705782-CDS-L-elsbetiae_contig1667:1257..1446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 1258..1446 -
1622815692.3412786-CDS-L-elsbetiae_contig1667:2045..21171622815692.3412786-CDS-L-elsbetiae_contig1667:2045..2117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 2046..2117 -
1691683041.4806356-CDS-L-elsbetiae_contig1667:2045..21171691683041.4806356-CDS-L-elsbetiae_contig1667:2045..2117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 2046..2117 -
1622815692.352647-CDS-L-elsbetiae_contig1667:2344..24401622815692.352647-CDS-L-elsbetiae_contig1667:2344..2440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 2345..2440 -
1691683041.4905183-CDS-L-elsbetiae_contig1667:2344..24401691683041.4905183-CDS-L-elsbetiae_contig1667:2344..2440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1667 2345..2440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.3645935-UTR-L-elsbetiae_contig1667:2440..24921622815692.3645935-UTR-L-elsbetiae_contig1667:2440..2492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1667 2441..2492 -
1691683041.504398-UTR-L-elsbetiae_contig1667:2440..24921691683041.504398-UTR-L-elsbetiae_contig1667:2440..2492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1667 2441..2492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1667.4496.1

>prot_L-elsbetiae_contig1667.4496.1 ID=prot_L-elsbetiae_contig1667.4496.1|Name=mRNA_L-elsbetiae_contig1667.4496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MKNLKAVSSSYDAASWERDRAANKKVMERLRTVRYVREKATPEEFSRRGV
RHLRKQVARTRGQALEAGFSSVPRLFDNTGKRGKVRSSGGKKRGRQPKNQ
DPPSSSSVSSPSNRGQELL
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mRNA from alignment at L-elsbetiae_contig1667:1258..2492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1667.4496.1 ID=mRNA_L-elsbetiae_contig1667.4496.1|Name=mRNA_L-elsbetiae_contig1667.4496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1235bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:1258..2492- (Laminarionema elsbetiae ELsaHSoW15)
CAACAACACTCTAATCGTTGTTACCTCAACCCGTTTGACCCTCCTCGTGT
AGATGAAAAATCTCAAGGCGGTGTCTTCGAGCTATGACGCGGCCTCATGG
GAGAGAGATCGGGCAGCCAACAAAAAGGTTATGGAGCGTCTGCGGACGGT
GAGACAGATACATTCGCCAGTGTTTCGAACCAAAAATGGTGGTGATGGTG
ATGGTGGTGGTGGTGGTGGTGGTGGTAAGTTGGTGGTGGTGAGAGTTGGC
GGCCACATTATTGTGGTTGGGACATGTATTTCCTGCTGTGCTTCTGCACG
CAAAACGTTCGCCCACAGAAATCTAAACATTTAAATACGTGATTGAACTT
CGAAGGGCTGTGTGTGTTTGAAAAGGTTCGCTACGTGAGGGAGAAAGCGA
CGCCGGAAGAGTTCAGCCGCAGGGGCGTCAGGCACTTACGGAAACAGGTG
CGGGACCCGCAGATATGATTTCAAGGAGAATTGACTTGTGCCCTGTACCT
TTTCGTTTCGGGCATAGCCCTTGTTGACCCTACATACTGATCTAAATGCG
CTTGATTAGGACCTATCGAGTGCCTTGCACGCCTCTTCATGCGGACGATA
CGAGCGCGTTTAGCGTGTACTTCTCTCTCGCCAAACCATATTTGGCATGA
TGCACTCTGGTGTATTCATGTCTGTCTGTCGTCCGATATACACGAGACAC
GCGGGGCGTCAAGGGGCACATAAAGCTCTCCGAACCAAGATCGTCAGAAG
ACTAAAGGGACTGGTCGCCGCAGAAACCCTAAACCATTAAGCAAGATATT
TCACAATATTCTAGAGTTGAAAAGGAACACGCCCTTGCTGAGTTGACCGG
CAAGAAGAGAGGGTAGGGCGCTTGCACCGTGGCTTATCCCCTTCCACATA
CACAGCCGTTCCCACTTCCTCACCACCACCACCACCACCACCCAAAATGG
TCCCATGTGAGCGCTACAACCAGAAGCAGCCTCCACCAACGGCTACCTCT
GCTATGACCCTACACCATGCACCTCATGCTACCCGCGCGACCGCAGGTGG
CGCGCACGAGAGGCCAAGCGCTGGAAGCAGGCTTTTCTTCGGTGCCTCGA
CTCTTCGACAACACTGGCAAGCGAGGTAAAGTACGCAGCAGCGGCGGGAA
GAAGAGAGGCCGGCAACCTAAAAATCAAGACCCACCCTCATCATCGTCAG
TTTCGTCCCCTTCCAACCGAGGCCAAGAACTCCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1667:1258..2492-

>mRNA_L-elsbetiae_contig1667.4496.1 ID=mRNA_L-elsbetiae_contig1667.4496.1|Name=mRNA_L-elsbetiae_contig1667.4496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig1667:1258..2492- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAATCTCAAGGCGGTGTCTTCGAGCTATGACGCGGCCTCATGGGA
GAGAGATCGGGCAGCCAACAAAAAGGTTATGGAGCGTCTGCGGACGATGA
AAAATCTCAAGGCGGTGTCTTCGAGCTATGACGCGGCCTCATGGGAGAGA
GATCGGGCAGCCAACAAAAAGGTTATGGAGCGTCTGCGGACGGTTCGCTA
CGTGAGGGAGAAAGCGACGCCGGAAGAGTTCAGCCGCAGGGGCGTCAGGC
ACTTACGGAAACAGGTTCGCTACGTGAGGGAGAAAGCGACGCCGGAAGAG
TTCAGCCGCAGGGGCGTCAGGCACTTACGGAAACAGGTGGCGCGCACGAG
AGGCCAAGCGCTGGAAGCAGGCTTTTCTTCGGTGCCTCGACTCTTCGACA
ACACTGGCAAGCGAGGTAAAGTACGCAGCAGCGGCGGGAAGAAGAGAGGC
CGGCAACCTAAAAATCAAGACCCACCCTCATCATCGTCAGTTTCGTCCCC
TTCCAACCGAGGCCAAGAACTCCTTGTGGCGCGCACGAGAGGCCAAGCGC
TGGAAGCAGGCTTTTCTTCGGTGCCTCGACTCTTCGACAACACTGGCAAG
CGAGGTAAAGTACGCAGCAGCGGCGGGAAGAAGAGAGGCCGGCAACCTAA
AAATCAAGACCCACCCTCATCATCGTCAGTTTCGTCCCCTTCCAACCGAG
GCCAAGAACTCCTT
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