mRNA_L-elsbetiae_contig16583.4456.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16583.4456.1
Unique NamemRNA_L-elsbetiae_contig16583.4456.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A835YPH9_9STRA (Methylthioribose-1-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.950e-29
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    5 WPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALHL 256
            WPLT++RA +E  AL   +K CP  +PEVYH D T+  +VMRYIEPPH+ILR GLIKG  YSTLAAD+ T+LARTLF +SALHL
Sbjct:  465 WPLTMERARFEYMALAEEYKHCPQFTPEVYHFDPTLGALVMRYIEPPHIILRQGLIKGYTYSTLAADVATFLARTLFLTSALHL 548          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A1U8AX82_NELNU (S-methyl-5-thioribose kinase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AX82_NELNU)

HSP 1 Score: 112 bits (280), Expect = 1.390e-27
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALHL 256
            SWP+T +RAYYE+ AL    + CPDH PEVYH DRTM+ I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+A+TLFF+S L+L
Sbjct:   73 SWPMTKERAYYETMALKEHGRLCPDHVPEVYHFDRTMSLIAMRYLEPPHIILRKGLIAGVEYPLLAEHMSEYMAKTLFFTSLLYL 157          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A7J6V323_THATH (S-methyl-5-thioribose kinase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V323_THATH)

HSP 1 Score: 107 bits (267), Expect = 1.080e-26
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL    + CPDH PEVYH DR M+ I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+A+TLFF+S L+
Sbjct:   36 SWPMTKERAYFEALALKEHGRLCPDHVPEVYHFDRAMSLIAMRYLEPPHIILRKGLIAGVEYPLLAEHMSDYMAKTLFFTSLLY 119          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A445MEV5_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A445MEV5_ENSVE)

HSP 1 Score: 104 bits (260), Expect = 1.370e-26
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWPLT +RAY+ES AL      CP+H P+VYH D+ ++ I MRY+EPPH+ILR GLI G+ Y  LA  M  YLARTLFF+S L+
Sbjct:   78 SWPLTKERAYFESLALKEHGSLCPNHVPQVYHFDQPLSLIAMRYLEPPHIILRKGLIAGIEYPMLAQHMSDYLARTLFFTSLLY 161          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: V4UA92_CITCL (S-methyl-5-thioribose kinase n=1 Tax=Citrus clementina TaxID=85681 RepID=V4UA92_CITCL)

HSP 1 Score: 107 bits (268), Expect = 1.750e-26
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL    K CPDH PEVYH DRTM+ I MRY+EPPH+ILR GLI G++Y  LA  M  ++A+TLF++S L+
Sbjct:   73 SWPMTKERAYFEALALKEHGKLCPDHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIKYPLLAEHMSEFMAKTLFYTSLLY 156          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: UPI001262FB9C (methylthioribose kinase-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262FB9C)

HSP 1 Score: 105 bits (261), Expect = 1.770e-26
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL    + CP H PEVYH DRTMA I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+ARTLF +S L+
Sbjct:   73 SWPMTKERAYFEAMALKEHGQLCPGHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSEYMARTLFSTSLLY 156          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A6G1BUE0_9ORYZ (S-methyl-5-thioribose kinase n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BUE0_9ORYZ)

HSP 1 Score: 107 bits (267), Expect = 2.140e-26
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL      CPDH PEVYH DR M+ I MRYIEPPH+ILR GLI G+ Y  LA  M  Y+A+TLFF+S L+
Sbjct:   78 SWPMTRERAYFEASALQKHRSLCPDHVPEVYHFDRAMSLIGMRYIEPPHIILRKGLIAGVEYPLLAEHMADYMAKTLFFTSLLN 161          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A314XEV1_PRUYE (Methylthioribose kinase n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XEV1_PRUYE)

HSP 1 Score: 103 bits (258), Expect = 2.160e-26
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL       PDH PEVYH DRTM+ I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+ARTLFF+S L+
Sbjct:   73 SWPMTKERAYFEALALREHGGLSPDHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLADHMSDYIARTLFFTSLLY 156          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A6V7NXJ0_ANACO (S-methyl-5-thioribose kinase n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NXJ0_ANACO)

HSP 1 Score: 107 bits (267), Expect = 3.460e-26
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALH 253
            SWP+T +RAY+E+ AL    + CPDH PEVYH DR+M+ I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+A+TLFF+S L+
Sbjct:   48 SWPMTKERAYFEALALKEHGRLCPDHVPEVYHFDRSMSVIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSEYMAKTLFFTSLLY 131          
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Match: A0A2P2JL77_RHIMU (S-methyl-5-thioribose kinase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JL77_RHIMU)

HSP 1 Score: 106 bits (265), Expect = 3.780e-26
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    2 SWPLTLDRAYYESEALMAAFKSCPDHSPEVYHADRTMATIVMRYIEPPHVILRVGLIKGLRYSTLAADMGTYLARTLFFSSALHL 256
            SWP+T +RAY+E+ AL      CP+H PEVYH DRTM+ I MRY+EPPH+ILR GLI G+ Y  LA  M  Y+A+TLF+SS L+L
Sbjct:   73 SWPMTKERAYFETLALKQHGGLCPEHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSDYMAKTLFYSSLLYL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16583.4456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPH9_9STRA8.950e-2965.48Methylthioribose-1-phosphate isomerase n=1 Tax=Tri... [more]
A0A1U8AX82_NELNU1.390e-2761.18S-methyl-5-thioribose kinase n=1 Tax=Nelumbo nucif... [more]
A0A7J6V323_THATH1.080e-2658.33S-methyl-5-thioribose kinase n=1 Tax=Thalictrum th... [more]
A0A445MEV5_ENSVE1.370e-2658.33Uncharacterized protein n=2 Tax=Ensete ventricosum... [more]
V4UA92_CITCL1.750e-2658.33S-methyl-5-thioribose kinase n=1 Tax=Citrus clemen... [more]
UPI001262FB9C1.770e-2659.52methylthioribose kinase-like n=1 Tax=Pistacia vera... [more]
A0A6G1BUE0_9ORYZ2.140e-2659.52S-methyl-5-thioribose kinase n=1 Tax=Oryza meyeria... [more]
A0A314XEV1_PRUYE2.160e-2659.52Methylthioribose kinase n=1 Tax=Prunus yedoensis v... [more]
A0A6V7NXJ0_ANACO3.460e-2658.33S-methyl-5-thioribose kinase n=1 Tax=Ananas comosu... [more]
A0A2P2JL77_RHIMU3.780e-2658.82S-methyl-5-thioribose kinase n=1 Tax=Rhizophora mu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16583contigL-elsbetiae_contig16583:2799..3441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog4565.Traes_2BL_6EFDB24E6.2
KEGG rclassRC00002,RC00078
KEGG koko:K00899
KEGG ReactionR04143
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0000302,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0019509,GO:0019752,GO:0032870,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042802,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046522,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097366,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.methylthioribose kinase
EggNOG OGs2QVM3@2759,37IGS@33090,3G7YJ@35493,3IEG9@38820,3KSX4@4447,COG4857@1
EC2.7.1.100
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s16_g6522_t1
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size261
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.0610878-CDS-L-elsbetiae_contig16583:2799..29201622815688.0610878-CDS-L-elsbetiae_contig16583:2799..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16583 2800..2920 -
1691683038.700504-CDS-L-elsbetiae_contig16583:2799..29201691683038.700504-CDS-L-elsbetiae_contig16583:2799..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16583 2800..2920 -
1622815688.0764906-CDS-L-elsbetiae_contig16583:3304..34411622815688.0764906-CDS-L-elsbetiae_contig16583:3304..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16583 3305..3441 -
1691683038.7161121-CDS-L-elsbetiae_contig16583:3304..34411691683038.7161121-CDS-L-elsbetiae_contig16583:3304..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16583 3305..3441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16583.4456.1prot_L-elsbetiae_contig16583.4456.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16583 2800..3441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16583.4456.1

>prot_L-elsbetiae_contig16583.4456.1 ID=prot_L-elsbetiae_contig16583.4456.1|Name=mRNA_L-elsbetiae_contig16583.4456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
VLASHPGQGVLRERGVDGRLQELSGPQPGGVPRRPHHGHHRHALHRAAAR
HPPGGADQGSPVQHPGGRYGHLPRTDTVLQLRPAPI
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mRNA from alignment at L-elsbetiae_contig16583:2799..3441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16583.4456.1 ID=mRNA_L-elsbetiae_contig16583.4456.1|Name=mRNA_L-elsbetiae_contig16583.4456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=643bp|location=Sequence derived from alignment at L-elsbetiae_contig16583:2799..3441- (Laminarionema elsbetiae ELsaHSoW15)
GTCTTGGCCTCTCACCCTGGACAGGGCGTACTACGAGAGCGAGGCGTTGA TGGCCGCCTTCAAGAGCTGTCCGGACCACAGCCCGGAGGTGTACCACGCC GACCGCACCATGGCCACCATCGTCATGCGCTACATCGGTGAGAGCGAGCG AGAGAGGCGGAGGGGTTTCGCCGGTTCGTGGCAGGCTTTCTCTGTTGTCT CTTGTCTGTCGCTCTCTCCCTCCCCCCCCCCCTCTCTCTCTCCCACTCTA CGTACCCCGCGCCGACAGTTTGCGCAAGCATCGTTCTGCGCGGGCGAAGC GACCTGTGCGGCCCTCCTGTGCTTGTCTTGTCTTGTACCGCGTTACTCGG GACAACCGCACCACTGTCTCGAACCGGACGTATCTACGCCATACTACCGT TGCACGTCCAAAAACTAGACATACAGAGAGCAACAAATTGACAAAGCGTC CTTGCCCTGCCCCCCGCCCCGCCCCGTTCCGGAACTTCCTCGCGGCACCC CCCCCCCCCCCTGGCTCGCAGAGCCGCCGCACGTCATCCTCCGGGTGGGG CTGATCAAGGGTCTCCGGTACAGCACCCTGGCGGCCGATATGGGCACCTA CCTCGCACGGACACTGTTCTTCAGCTCCGCCCTGCACCTATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16583:2799..3441-

>mRNA_L-elsbetiae_contig16583.4456.1 ID=mRNA_L-elsbetiae_contig16583.4456.1|Name=mRNA_L-elsbetiae_contig16583.4456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig16583:2799..3441- (Laminarionema elsbetiae ELsaHSoW15)
GTCTTGGCCTCTCACCCTGGACAGGGCGTACTACGAGAGCGAGGCGTTGA
TGGCCGCCTTCAAGAGCTGTCCGGACCACAGCCCGGAGGTGTACCACGCC
GACCGCACCATGGCCACCATCGTCATGCGCTACATCGGTCTTGGCCTCTC
ACCCTGGACAGGGCGTACTACGAGAGCGAGGCGTTGATGGCCGCCTTCAA
GAGCTGTCCGGACCACAGCCCGGAGGTGTACCACGCCGACCGCACCATGG
CCACCATCGTCATGCGCTACATCGAGCCGCCGCACGTCATCCTCCGGGTG
GGGCTGATCAAGGGTCTCCGGTACAGCACCCTGGCGGCCGATATGGGCAC
CTACCTCGCACGGACACTGTTCTTCAGCTCCGCCCTGCACCTATCAGCCG
CCGCACGTCATCCTCCGGGTGGGGCTGATCAAGGGTCTCCGGTACAGCAC
CCTGGCGGCCGATATGGGCACCTACCTCGCACGGACACTGTTCTTCAGCT
CCGCCCTGCACCTATC
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