mRNA_L-elsbetiae_contig16534.4428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16534.4428.1
Unique NamemRNA_L-elsbetiae_contig16534.4428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16534.4428.1 vs. uniprot
Match: A0A6H5L7B6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.300e-9
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:  109 ATGHYFGSGRLMFDVPLGADIPLSQRYVQIGNGELLTATARGSLMMDFHQWDSEGQREDVRVLMRDVSVVEGLGPNLFSLHAVSVTHEITLDEYGTHVHGCITFPRNAAVASLYFTRVPQHAVSATLTAHSGFLPEF 519
            A+  +  S + MFD+    +IP       +G+G LL   A GS+ + F Q D  G +  + V + D+SVVE L  NLFS+HAVS+   I  DE G  +   + F +    ++ Y  R+P +  SAT+   S  LP F
Sbjct:  253 ASNSFTNSSQHMFDLQ---EIPAI-----VGDGRLLEVQAIGSINLSFFQEDENGGKTTMCVKLTDLSVVESLSFNLFSMHAVSLKQHILHDERGATLQNGLLFAKEEKASAAYVMRLP-YDPSATVV-DSAALPAF 379
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16534.4428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7B6_9PHAE9.300e-935.04Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16534contigL-elsbetiae_contig16534:597..1439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.3699307-CDS-L-elsbetiae_contig16534:596..14391622815685.3699307-CDS-L-elsbetiae_contig16534:596..1439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16534 597..1439 +
1691683036.9580781-CDS-L-elsbetiae_contig16534:596..14391691683036.9580781-CDS-L-elsbetiae_contig16534:596..1439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16534 597..1439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16534.4428.1prot_L-elsbetiae_contig16534.4428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16534 597..1439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16534.4428.1

>prot_L-elsbetiae_contig16534.4428.1 ID=prot_L-elsbetiae_contig16534.4428.1|Name=mRNA_L-elsbetiae_contig16534.4428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
PDLSDGRVGSAFSVFPVGNADLCQPEGSEIVHSDSEATGHYFGSGRLMFD
VPLGADIPLSQRYVQIGNGELLTATARGSLMMDFHQWDSEGQREDVRVLM
RDVSVVEGLGPNLFSLHAVSVTHEITLDEYGTHVHGCITFPRNAAVASLY
FTRVPQHAVSATLTAHSGFLPEFPPPQPPHGGDPSDLPPPPFAGGGGGGG
GAPGLPFPPAAYPGVVTSRDYVPPTGIFSGSPAGVMYSELPTAGAAGVVP
RGIPLTPADFPGVVPPGVAHDFFALYGVSST
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mRNA from alignment at L-elsbetiae_contig16534:597..1439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16534.4428.1 ID=mRNA_L-elsbetiae_contig16534.4428.1|Name=mRNA_L-elsbetiae_contig16534.4428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=843bp|location=Sequence derived from alignment at L-elsbetiae_contig16534:597..1439+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGACTTGTCTGATGGTAGGGTTGGTTCTGCTTTTTCGGTCTTTCCAGT
TGGTAATGCGGATTTGTGCCAGCCTGAGGGTAGTGAGATAGTGCATTCTG
ATTCCGAAGCCACGGGGCATTATTTCGGGTCTGGTAGGCTGATGTTCGAC
GTACCTCTTGGTGCCGATATCCCTCTCTCCCAACGATATGTGCAAATTGG
TAATGGAGAACTGCTGACCGCTACGGCAAGGGGTAGTTTGATGATGGATT
TCCACCAGTGGGACAGTGAGGGTCAGAGAGAGGACGTCCGGGTCCTCATG
AGAGATGTTTCTGTGGTAGAAGGCCTGGGGCCCAACCTTTTCTCTCTCCA
CGCCGTTTCCGTCACGCATGAAATCACTTTAGATGAATACGGCACACATG
TGCACGGTTGCATTACTTTCCCGCGTAACGCGGCTGTTGCTTCGCTTTAC
TTCACACGAGTACCACAGCACGCCGTTTCCGCAACTCTTACAGCGCATTC
TGGATTTCTCCCCGAGTTTCCCCCCCCCCAACCCCCCCACGGTGGCGATC
CCTCTGACCTGCCGCCGCCGCCCTTCGCGGGTGGTGGTGGTGGGGGTGGA
GGGGCACCGGGGCTTCCCTTCCCGCCCGCCGCTTACCCTGGTGTAGTGAC
TTCGCGTGACTATGTCCCCCCCACCGGAATTTTCAGTGGGTCGCCTGCGG
GTGTAATGTATTCCGAGCTTCCCACCGCCGGCGCTGCCGGTGTAGTACCT
CGCGGCATACCGCTTACCCCCGCCGATTTTCCTGGCGTAGTACCTCCTGG
TGTTGCCCACGATTTTTTTGCGTTGTACGGGGTGAGCTCCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16534:597..1439+

>mRNA_L-elsbetiae_contig16534.4428.1 ID=mRNA_L-elsbetiae_contig16534.4428.1|Name=mRNA_L-elsbetiae_contig16534.4428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig16534:597..1439+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGACTTGTCTGATGGTAGGGTTGGTTCTGCTTTTTCGGTCTTTCCAGT
TGGTAATGCGGATTTGTGCCAGCCTGAGGGTAGTGAGATAGTGCATTCTG
ATTCCGAAGCCACGGGGCATTATTTCGGGTCTGGTAGGCTGATGTTCGAC
GTACCTCTTGGTGCCGATATCCCTCTCTCCCAACGATATGTGCAAATTGG
TAATGGAGAACTGCTGACCGCTACGGCAAGGGGTAGTTTGATGATGGATT
TCCACCAGTGGGACAGTGAGGGTCAGAGAGAGGACGTCCGGGTCCTCATG
AGAGATGTTTCTGTGGTAGAAGGCCTGGGGCCCAACCTTTTCTCTCTCCA
CGCCGTTTCCGTCACGCATGAAATCACTTTAGATGAATACGGCACACATG
TGCACGGTTGCATTACTTTCCCGCGTAACGCGGCTGTTGCTTCGCTTTAC
TTCACACGAGTACCACAGCACGCCGTTTCCGCAACTCTTACAGCGCATTC
TGGATTTCTCCCCGAGTTTCCCCCCCCCCAACCCCCCCACGGTGGCGATC
CCTCTGACCTGCCGCCGCCGCCCTTCGCGGGTGGTGGTGGTGGGGGTGGA
GGGGCACCGGGGCTTCCCTTCCCGCCCGCCGCTTACCCTGGTGTAGTGAC
TTCGCGTGACTATGTCCCCCCCACCGGAATTTTCAGTGGGTCGCCTGCGG
GTGTAATGTATTCCGAGCTTCCCACCGCCGGCGCTGCCGGTGTAGTACCT
CGCGGCATACCGCTTACCCCCGCCGATTTTCCTGGCGTAGTACCTCCTGG
TGTTGCCCACGATTTTTTTGCGTTGTACGGGGTGAGCTCCACGCCTGACT
TGTCTGATGGTAGGGTTGGTTCTGCTTTTTCGGTCTTTCCAGTTGGTAAT
GCGGATTTGTGCCAGCCTGAGGGTAGTGAGATAGTGCATTCTGATTCCGA
AGCCACGGGGCATTATTTCGGGTCTGGTAGGCTGATGTTCGACGTACCTC
TTGGTGCCGATATCCCTCTCTCCCAACGATATGTGCAAATTGGTAATGGA
GAACTGCTGACCGCTACGGCAAGGGGTAGTTTGATGATGGATTTCCACCA
GTGGGACAGTGAGGGTCAGAGAGAGGACGTCCGGGTCCTCATGAGAGATG
TTTCTGTGGTAGAAGGCCTGGGGCCCAACCTTTTCTCTCTCCACGCCGTT
TCCGTCACGCATGAAATCACTTTAGATGAATACGGCACACATGTGCACGG
TTGCATTACTTTCCCGCGTAACGCGGCTGTTGCTTCGCTTTACTTCACAC
GAGTACCACAGCACGCCGTTTCCGCAACTCTTACAGCGCATTCTGGATTT
CTCCCCGAGTTTCCCCCCCCCCAACCCCCCCACGGTGGCGATCCCTCTGA
CCTGCCGCCGCCGCCCTTCGCGGGTGGTGGTGGTGGGGGTGGAGGGGCAC
CGGGGCTTCCCTTCCCGCCCGCCGCTTACCCTGGTGTAGTGACTTCGCGT
GACTATGTCCCCCCCACCGGAATTTTCAGTGGGTCGCCTGCGGGTGTAAT
GTATTCCGAGCTTCCCACCGCCGGCGCTGCCGGTGTAGTACCTCGCGGCA
TACCGCTTACCCCCGCCGATTTTCCTGGCGTAGTACCTCCTGGTGTTGCC
CACGATTTTTTTGCGTTGTACGGGGTGAGCTCCACG
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