mRNA_L-elsbetiae_contig16519.4418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16519.4418.1
Unique NamemRNA_L-elsbetiae_contig16519.4418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.230e-32
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEVDQ 222
            +MVVDTLEP++  RRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWK+  ++   Q
Sbjct:   53 QMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQ 126          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.730e-17
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEVDQ 222
            R+V DTL+P++  RRAYRLVGGVLVERTVGE+LP V  N+E I+ +L  L      K+KE ++WK    ++  Q
Sbjct:   71 RLVEDTLKPLETTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWKAKYNIKTQQ 144          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: K0S7I7_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7I7_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 4.920e-16
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEV-DQPDTSNR 240
            R+V +TLEPMD  RRA+RLVGGVLVERT+ EVLPTV  N++ +  L++Q+ T    K+K+ +EWK    ++  ++ D  N+
Sbjct:   44 RLVEETLEPMDPDRRAFRLVGGVLVERTIREVLPTVTENRKRLDDLIEQVKTQMEAKQKDVSEWKAKYNIKTQEEVDAENK 124          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A7S2UDR3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDR3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.350e-15
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEV 216
            R+V +TL+P+D  RRA+RLVGGVLVERTVGEVLP+V  N+  + ++++ L T    K+KE A WK    ++ 
Sbjct:   15 RLVEETLKPLDPDRRAFRLVGGVLVERTVGEVLPSVMTNRSNLDEVVKTLQTRLETKQKETAAWKAKYNIKT 86          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A1L9TL30_9EURO (Uncharacterized protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1L9TL30_9EURO)

HSP 1 Score: 73.6 bits (179), Expect = 4.610e-15
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEVDQP 225
            ++V+DTLEP+   R  +R+V GVLVERTV +VLPT+K N +G+KQ+L++L  +  +K+ E   WK    ++V QP
Sbjct:   44 KLVIDTLEPLPQDRTCFRMVNGVLVERTVSDVLPTLKTNSDGLKQVLEELLKSYKSKQAEMDSWKKKNNIQVVQP 118          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: L8GFE5_ACACA (Prefoldin subunit 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GFE5_ACACA)

HSP 1 Score: 73.6 bits (179), Expect = 6.980e-15
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEV 216
            R+V+D +  +D  RR YRLVGGVLVERTVGEVLP V+ N EGI+Q+L+ L  +   K+K   E+KV  ++ V
Sbjct:   39 RLVIDAVSGLDAGRRCYRLVGGVLVERTVGEVLPAVRKNLEGIEQILKTLNASLLQKDKALNEFKVQHKIRV 110          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A6P4AI01_ZIZJJ (probable prefoldin subunit 2 n=3 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4AI01_ZIZJJ)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-14
Identity = 31/76 (40.79%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 MVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEVDQPDT 231
            +V++ ++P+D +RR YR++GGVLVERT+ EVLP V+ N+EG+++++ +L      K+KE AE++   ++ + +PD+
Sbjct:   48 LVINAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEIAEFEAKYKIRIKKPDS 123          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A4P9Y4X5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y4X5_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 1.610e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEV 216
            R+VV+T+ PM   R+ +RLVGGVLVERTVGEVLP +KANQ+GIK LL++L     +K+ E   ++   R+++
Sbjct:    1 RLVVNTITPMSGDRKCFRLVGGVLVERTVGEVLPALKANQDGIKGLLEKLVEQYKSKDTEFLAFQKEHRIQI 72          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A507FQL5_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FQL5_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 1.860e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 RMVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKE----AAEWKVGVR 207
            +MVVDT+ P+D  R+ +RLV GVLVERTVGEVLPT+K N + I +++QQL +T   KE+E      +W + V+
Sbjct:   45 KMVVDTMTPLDGGRKCFRLVNGVLVERTVGEVLPTLKLNMDNIDKIVQQLVSTYKKKEEEFMAYQKKWNIQVK 117          
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Match: A0A3M6VHU8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHU8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.210e-14
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 VVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKVGVRVEVD 219
            V+ TL  +   R+AYR++GGVLVERTV EVLP VKAN++GI Q+L+QL  +  +KEK A EW+    ++ D
Sbjct:   41 VIQTLTELPNGRKAYRMIGGVLVERTVQEVLPAVKANRDGIAQVLKQLNESIKHKEKTADEWQQKYNIQED 111          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16519.4418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG4_ECTSI1.230e-3282.43Prefoldin subunit, putative n=2 Tax=Ectocarpus Tax... [more]
A0A7S0CI05_9STRA8.730e-1751.35Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0S7I7_THAOC4.920e-1648.15Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S2UDR3_9STRA4.350e-1550.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1L9TL30_9EURO4.610e-1546.67Uncharacterized protein n=3 Tax=Aspergillus TaxID=... [more]
L8GFE5_ACACA6.980e-1552.78Prefoldin subunit 2, putative n=1 Tax=Acanthamoeba... [more]
A0A6P4AI01_ZIZJJ1.340e-1440.79probable prefoldin subunit 2 n=3 Tax=Rhamnaceae Ta... [more]
A0A4P9Y4X5_9FUNG1.610e-1451.39Uncharacterized protein (Fragment) n=1 Tax=Piptoce... [more]
A0A507FQL5_9FUNG1.860e-1450.68Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A3M6VHU8_9STRA2.210e-1452.11Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16519contigL-elsbetiae_contig16519:2986..3228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D7FJG4
KEGG koko:K09549
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0010638,GO:0033043,GO:0044183,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0065007
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGsKOG4098@1,KOG4098@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Ec32 ortholog descriptionPrefoldin subunit 2
Ec32 orthologEc-14_006240.1
Exons1
Model size243
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.4487433-CDS-L-elsbetiae_contig16519:2985..32251622815684.4487433-CDS-L-elsbetiae_contig16519:2985..3225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16519 2986..3225 -
1691683036.4428859-CDS-L-elsbetiae_contig16519:2985..32251691683036.4428859-CDS-L-elsbetiae_contig16519:2985..3225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16519 2986..3225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.4619057-UTR-L-elsbetiae_contig16519:3225..32281622815684.4619057-UTR-L-elsbetiae_contig16519:3225..3228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16519 3226..3228 -
1691683036.4554017-UTR-L-elsbetiae_contig16519:3225..32281691683036.4554017-UTR-L-elsbetiae_contig16519:3225..3228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16519 3226..3228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16519.4418.1prot_L-elsbetiae_contig16519.4418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16519 2986..3225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16519.4418.1

>prot_L-elsbetiae_contig16519.4418.1 ID=prot_L-elsbetiae_contig16519.4418.1|Name=mRNA_L-elsbetiae_contig16519.4418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MVVDTLEPMDVARRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLA
TTRANKEKEAAEWKVGVRVEVDQPDTSNR*
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mRNA from alignment at L-elsbetiae_contig16519:2986..3228-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16519.4418.1 ID=mRNA_L-elsbetiae_contig16519.4418.1|Name=mRNA_L-elsbetiae_contig16519.4418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=243bp|location=Sequence derived from alignment at L-elsbetiae_contig16519:2986..3228- (Laminarionema elsbetiae ELsaHSoW15)
AGAATGGTGGTAGACACGCTGGAGCCTATGGATGTGGCGCGGAGAGCCTA CCGACTGGTGGGAGGCGTGCTGGTGGAGCGCACGGTCGGGGAGGTGCTGC CCACGGTCAAGGCAAACCAGGAGGGCATCAAGCAGCTGCTGCAGCAGCTG GCCACAACTCGGGCCAACAAGGAGAAGGAGGCGGCGGAGTGGAAGGTAGG TGTGCGTGTAGAGGTGGACCAACCGGACACATCAAATCGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16519:2986..3228-

>mRNA_L-elsbetiae_contig16519.4418.1 ID=mRNA_L-elsbetiae_contig16519.4418.1|Name=mRNA_L-elsbetiae_contig16519.4418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig16519:2986..3228- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTAGACACGCTGGAGCCTATGGATGTGGCGCGGAGAGCCTACCG
ACTGGTGGGAGGCGTGCTGGTGGAGCGCACGGTCGGGGAGGTGCTGCCCA
CGGTCAAGGCAAACCAGGAGGGCATCAAGCAGCTGCTGCAGCAGCTGGCC
ACAACTCGGGCCAACAAGGAGAAGGAGGCGGCGGAGTGGAAGGTAGGTGT
GCGTGTAGAGGTGGACCAACCGGACACATCAAATCGGTAGATGGTGGTAG
ACACGCTGGAGCCTATGGATGTGGCGCGGAGAGCCTACCGACTGGTGGGA
GGCGTGCTGGTGGAGCGCACGGTCGGGGAGGTGCTGCCCACGGTCAAGGC
AAACCAGGAGGGCATCAAGCAGCTGCTGCAGCAGCTGGCCACAACTCGGG
CCAACAAGGAGAAGGAGGCGGCGGAGTGGAAGGTAGGTGTGCGTGTAGAG
GTGGACCAACCGGACACATCAAATCGGTAG
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