mRNA_L-elsbetiae_contig16506.4414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16506.4414.1
Unique NamemRNA_L-elsbetiae_contig16506.4414.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.040e-29
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    4 CKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQLSGSGFQ 168
            C+PCEKEFT+E+ARQAHLQSHVPCPEKGCGFSALRK VNNHHEAKHGQLSGSGFQ
Sbjct:   59 CEPCEKEFTTETARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQLSGSGFQ 113
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BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.940e-29
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 CKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQLSGSGFQ 168
            C+PCEKEFT+E+ARQAHLQSHVPCPEKGCGFSALRK VNNHHEAKHGQ SGSGFQ
Sbjct:   76 CEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQ 130
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BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Match: A0A7S2RYE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYE8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.940e-16
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 HCKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQLSGSGFQ 168
            +C+ C+KEF+S SAR AHL+SH PCP  GC F+A +K VN H E  HGQ SG+G++
Sbjct:   59 YCEACDKEFSSASARDAHLRSHTPCPHPGCSFAASQKVVNAHFEVAHGQFSGTGYR 114
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BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Match: A0A6A4G4W6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G4W6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.470e-8
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    4 CKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQLSGSGFQ 168
            C+PC K F   S  +AH+++HV CP+  C F+A ++ V  HH+  HG+ +G G +
Sbjct:  487 CEPCAKSFAHASQHEAHMKTHVMCPD--CDFTASKRVVVVHHQTAHGEYAGEGLK 539
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BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Match: A0A662WT44_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT44_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.780e-7
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    4 CKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQLSGSGFQ 168
            C+ C K F   S  +AH+++HV CP+  C FSA ++ V  H ++ HG+ SG G +
Sbjct:  280 CETCVKSFAMASQYEAHMKTHVLCPD--CAFSASKRVVGAHFQSTHGEYSGQGLK 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16506.4414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JLR5_9PHAE1.040e-2992.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK97_ECTSI3.940e-2990.91Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2RYE8_9STRA1.940e-1657.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6A4G4W6_9STRA3.470e-840.00Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A662WT44_9STRA5.780e-740.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16506contigL-elsbetiae_contig16506:2855..3022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue4.6e-24
Seed eggNOG ortholog2880.D7FK97
Preferred nameZC3H4
KEGG koko:K20915
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5084@1,KOG1040@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.103012-CDS-L-elsbetiae_contig16506:2854..30221622815684.103012-CDS-L-elsbetiae_contig16506:2854..3022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16506 2855..3022 +
1691683036.219567-CDS-L-elsbetiae_contig16506:2854..30221691683036.219567-CDS-L-elsbetiae_contig16506:2854..3022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16506 2855..3022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16506.4414.1prot_L-elsbetiae_contig16506.4414.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16506 2855..3022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16506.4414.1

>prot_L-elsbetiae_contig16506.4414.1 ID=prot_L-elsbetiae_contig16506.4414.1|Name=mRNA_L-elsbetiae_contig16506.4414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
HCKPCEKEFTSESARQAHLQSHVPCPEKGCGFSALRKFVNNHHEAKHGQL
SGSGFQ
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mRNA from alignment at L-elsbetiae_contig16506:2855..3022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16506.4414.1 ID=mRNA_L-elsbetiae_contig16506.4414.1|Name=mRNA_L-elsbetiae_contig16506.4414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig16506:2855..3022+ (Laminarionema elsbetiae ELsaHSoW15)
CATTGCAAGCCCTGCGAGAAAGAGTTCACGTCGGAGAGCGCGAGGCAGGC
CCACCTGCAGTCCCACGTGCCCTGCCCCGAAAAGGGCTGCGGCTTCTCGG
CGCTGCGGAAGTTCGTCAACAACCACCACGAGGCCAAGCACGGCCAGCTC
AGCGGCTCCGGCTTTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16506:2855..3022+

>mRNA_L-elsbetiae_contig16506.4414.1 ID=mRNA_L-elsbetiae_contig16506.4414.1|Name=mRNA_L-elsbetiae_contig16506.4414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig16506:2855..3022+ (Laminarionema elsbetiae ELsaHSoW15)
CATTGCAAGCCCTGCGAGAAAGAGTTCACGTCGGAGAGCGCGAGGCAGGC
CCACCTGCAGTCCCACGTGCCCTGCCCCGAAAAGGGCTGCGGCTTCTCGG
CGCTGCGGAAGTTCGTCAACAACCACCACGAGGCCAAGCACGGCCAGCTC
AGCGGCTCCGGCTTTCAGCATTGCAAGCCCTGCGAGAAAGAGTTCACGTC
GGAGAGCGCGAGGCAGGCCCACCTGCAGTCCCACGTGCCCTGCCCCGAAA
AGGGCTGCGGCTTCTCGGCGCTGCGGAAGTTCGTCAACAACCACCACGAG
GCCAAGCACGGCCAGCTCAGCGGCTCCGGCTTTCAG
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