mRNA_L-elsbetiae_contig16499.4403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16499.4403.1
Unique NamemRNA_L-elsbetiae_contig16499.4403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16499.4403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16499contigL-elsbetiae_contig16499:1027..1967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.777306-CDS-L-elsbetiae_contig16499:1027..12971622815682.777306-CDS-L-elsbetiae_contig16499:1027..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16499 1028..1297 -
1691683035.319422-CDS-L-elsbetiae_contig16499:1027..12971691683035.319422-CDS-L-elsbetiae_contig16499:1027..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16499 1028..1297 -
1622815682.7902684-CDS-L-elsbetiae_contig16499:1874..19671622815682.7902684-CDS-L-elsbetiae_contig16499:1874..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16499 1875..1967 -
1691683035.3280747-CDS-L-elsbetiae_contig16499:1874..19671691683035.3280747-CDS-L-elsbetiae_contig16499:1874..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16499 1875..1967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16499.4403.1prot_L-elsbetiae_contig16499.4403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16499 1028..1967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16499.4403.1

>prot_L-elsbetiae_contig16499.4403.1 ID=prot_L-elsbetiae_contig16499.4403.1|Name=mRNA_L-elsbetiae_contig16499.4403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
GPLLPLPPTISKPILREIHHIPPTSRRLLGKKGKIRATARMAYVSAIARA
LILYAGLALHGQFTGATTSGQATTTDDTSLCPAEYGACLANSACFECASF
IEAAYDGCRDPDYSGLTATCS
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mRNA from alignment at L-elsbetiae_contig16499:1027..1967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16499.4403.1 ID=mRNA_L-elsbetiae_contig16499.4403.1|Name=mRNA_L-elsbetiae_contig16499.4403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=941bp|location=Sequence derived from alignment at L-elsbetiae_contig16499:1027..1967- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCGCTCCTGCCTTTGCCTCCAACCATCAGCAAGCCGATTTTGCGTGA
GATACACCATATCCCTCCAACTTCGCGTCGCCTTCTAGGGAAGGTGGGTG
GCACATGAACTCGGCTACACAAGCAGGCACTCTGTCCGTAACAACTCCAG
ACCACTGCTGTGCACTCTATCATCGTTCCTCGTAGACTATCTACATCACA
CATACATACATGAGCGGGAAAAATGCGGGTAAGCTCCCCATCGTCGGTGT
CTTACATATGTACGCACAGCAGCAGCCTTTGCCGTGGCCACAGGAATATA
ACCCCCACAAGTGTCAGTCAGATCCCACACTAAGTCGTCGCATCTAAGAT
CATCGTACTTTTTATTTCTTACAGCAGCGTCCTTGCACCCCGCTTGTTGA
CACCGCACGTGAACTGATGCATTTGAAGTATAGCCAACACGAGACCTGGT
GCTGCGTGCATATCTATCTAATCGGGTGCAAGACGAAGGCAGTTTTGTTT
CGTGGATGTACATCATGTACATACGTAAACTTTTGACAATGCTACTATCT
CTTGCAACTGGCCCCATCTACATACGGGGTAGGTAACGCCCAGGAATAAC
AGCTGGATCTCATCGGAGTTGTCACGTGCTTGCATGATGGCTCCCCGCTC
TCTCGTGCTCCTGCTCGCAGAAAGGGAAGATTCGTGCAACCGCTAGAATG
GCCTACGTTAGTGCGATCGCCAGAGCACTCATCCTTTATGCTGGGCTTGC
CCTCCACGGTCAGTTCACTGGCGCAACCACGAGCGGCCAAGCCACCACCA
CCGACGACACGTCTCTCTGCCCCGCCGAATACGGGGCTTGTCTCGCAAAC
TCAGCTTGCTTTGAGTGCGCCTCTTTTATTGAGGCTGCGTACGATGGGTG
CCGGGATCCGGACTACAGCGGCCTGACCGCCACCTGCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16499:1027..1967-

>mRNA_L-elsbetiae_contig16499.4403.1 ID=mRNA_L-elsbetiae_contig16499.4403.1|Name=mRNA_L-elsbetiae_contig16499.4403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig16499:1027..1967- (Laminarionema elsbetiae ELsaHSoW15)
GGGCCGCTCCTGCCTTTGCCTCCAACCATCAGCAAGCCGATTTTGCGTGA
GATACACCATATCCCTCCAACTTCGCGTCGCCTTCTAGGGAAGGGGCCGC
TCCTGCCTTTGCCTCCAACCATCAGCAAGCCGATTTTGCGTGAGATACAC
CATATCCCTCCAACTTCGCGTCGCCTTCTAGGGAAGAAAGGGAAGATTCG
TGCAACCGCTAGAATGGCCTACGTTAGTGCGATCGCCAGAGCACTCATCC
TTTATGCTGGGCTTGCCCTCCACGGTCAGTTCACTGGCGCAACCACGAGC
GGCCAAGCCACCACCACCGACGACACGTCTCTCTGCCCCGCCGAATACGG
GGCTTGTCTCGCAAACTCAGCTTGCTTTGAGTGCGCCTCTTTTATTGAGG
CTGCGTACGATGGGTGCCGGGATCCGGACTACAGCGGCCTGACCGCCACC
TGCAGCAAAGGGAAGATTCGTGCAACCGCTAGAATGGCCTACGTTAGTGC
GATCGCCAGAGCACTCATCCTTTATGCTGGGCTTGCCCTCCACGGTCAGT
TCACTGGCGCAACCACGAGCGGCCAAGCCACCACCACCGACGACACGTCT
CTCTGCCCCGCCGAATACGGGGCTTGTCTCGCAAACTCAGCTTGCTTTGA
GTGCGCCTCTTTTATTGAGGCTGCGTACGATGGGTGCCGGGATCCGGACT
ACAGCGGCCTGACCGCCACCTGCAGC
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