mRNA_L-elsbetiae_contig16443.4378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16443.4378.1
Unique NamemRNA_L-elsbetiae_contig16443.4378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16443.4378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16443contigL-elsbetiae_contig16443:1730..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size453
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.9313884-CDS-L-elsbetiae_contig16443:1729..21821622815679.9313884-CDS-L-elsbetiae_contig16443:1729..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16443 1730..2182 +
1691683033.4128778-CDS-L-elsbetiae_contig16443:1729..21821691683033.4128778-CDS-L-elsbetiae_contig16443:1729..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16443 1730..2182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.9439716-UTR-L-elsbetiae_contig16443:2182..23191622815679.9439716-UTR-L-elsbetiae_contig16443:2182..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16443 2183..2319 +
1691683033.4228125-UTR-L-elsbetiae_contig16443:2182..23191691683033.4228125-UTR-L-elsbetiae_contig16443:2182..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16443 2183..2319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16443.4378.1prot_L-elsbetiae_contig16443.4378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16443 1730..2182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16443.4378.1

>prot_L-elsbetiae_contig16443.4378.1 ID=prot_L-elsbetiae_contig16443.4378.1|Name=mRNA_L-elsbetiae_contig16443.4378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MVLVFNAPAASVGSTLQGTSIPSVFTAGSAPGHAPDLSSSGSLLATPSLF
TRTGCKFALSAGRLLVFVLPSEEASRVEDKGAPPSSLPRQPARLYVLPLP
LAPVPSGPPLLSLSTLDGPQNPTMPSIAWFWQHSALPPALPYDGTLVQPS
*
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mRNA from alignment at L-elsbetiae_contig16443:1730..2319+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16443.4378.1 ID=mRNA_L-elsbetiae_contig16443.4378.1|Name=mRNA_L-elsbetiae_contig16443.4378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=590bp|location=Sequence derived from alignment at L-elsbetiae_contig16443:1730..2319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACTTGTTTTCAATGCACCTGCAGCTTCCGTCGGCTCCACCTTGCA
AGGCACCTCCATACCCTCGGTCTTCACCGCAGGGTCTGCACCCGGACACG
CCCCAGATTTATCGTCGTCGGGCTCCCTGTTGGCAACCCCCTCTCTTTTC
ACCCGGACCGGGTGTAAGTTCGCCTTGTCAGCTGGTCGCTTGTTGGTCTT
CGTGCTGCCGTCGGAGGAAGCGTCTCGGGTGGAGGACAAAGGAGCGCCGC
CTTCCAGCCTTCCACGGCAACCAGCACGGCTATATGTGCTGCCACTACCC
CTTGCTCCCGTGCCATCCGGTCCACCACTCCTCTCGCTGTCCACGCTAGA
CGGGCCACAAAACCCGACCATGCCGTCCATCGCGTGGTTTTGGCAACACT
CTGCCCTGCCGCCAGCCTTGCCGTATGACGGCACATTGGTACAACCGTCG
TGAGCCCATCTCTTATACTTCACGTTCACCATCCCGTCCTTGGCATGGTC
ACGGCAGTACTCCGCCTTGCCGCCGGCCTTGCCGTATGACGGCCTCTTGG
TACAACCGTTGTGGGTGCAGGCCTTGTGCTTCACGTCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16443:1730..2319+

>mRNA_L-elsbetiae_contig16443.4378.1 ID=mRNA_L-elsbetiae_contig16443.4378.1|Name=mRNA_L-elsbetiae_contig16443.4378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig16443:1730..2319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACTTGTTTTCAATGCACCTGCAGCTTCCGTCGGCTCCACCTTGCA
AGGCACCTCCATACCCTCGGTCTTCACCGCAGGGTCTGCACCCGGACACG
CCCCAGATTTATCGTCGTCGGGCTCCCTGTTGGCAACCCCCTCTCTTTTC
ACCCGGACCGGGTGTAAGTTCGCCTTGTCAGCTGGTCGCTTGTTGGTCTT
CGTGCTGCCGTCGGAGGAAGCGTCTCGGGTGGAGGACAAAGGAGCGCCGC
CTTCCAGCCTTCCACGGCAACCAGCACGGCTATATGTGCTGCCACTACCC
CTTGCTCCCGTGCCATCCGGTCCACCACTCCTCTCGCTGTCCACGCTAGA
CGGGCCACAAAACCCGACCATGCCGTCCATCGCGTGGTTTTGGCAACACT
CTGCCCTGCCGCCAGCCTTGCCGTATGACGGCACATTGGTACAACCGTCG
TGAATGGTACTTGTTTTCAATGCACCTGCAGCTTCCGTCGGCTCCACCTT
GCAAGGCACCTCCATACCCTCGGTCTTCACCGCAGGGTCTGCACCCGGAC
ACGCCCCAGATTTATCGTCGTCGGGCTCCCTGTTGGCAACCCCCTCTCTT
TTCACCCGGACCGGGTGTAAGTTCGCCTTGTCAGCTGGTCGCTTGTTGGT
CTTCGTGCTGCCGTCGGAGGAAGCGTCTCGGGTGGAGGACAAAGGAGCGC
CGCCTTCCAGCCTTCCACGGCAACCAGCACGGCTATATGTGCTGCCACTA
CCCCTTGCTCCCGTGCCATCCGGTCCACCACTCCTCTCGCTGTCCACGCT
AGACGGGCCACAAAACCCGACCATGCCGTCCATCGCGTGGTTTTGGCAAC
ACTCTGCCCTGCCGCCAGCCTTGCCGTATGACGGCACATTGGTACAACCG
TCGTGA
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