mRNA_L-elsbetiae_contig1644.4374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1644.4374.1
Unique NamemRNA_L-elsbetiae_contig1644.4374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1644.4374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1644contigL-elsbetiae_contig1644:13263..14044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.597665-CDS-L-elsbetiae_contig1644:13262..136401622815679.597665-CDS-L-elsbetiae_contig1644:13262..13640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 13263..13640 -
1691683033.2346153-CDS-L-elsbetiae_contig1644:13262..136401691683033.2346153-CDS-L-elsbetiae_contig1644:13262..13640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 13263..13640 -
1622815679.6077986-CDS-L-elsbetiae_contig1644:13930..140441622815679.6077986-CDS-L-elsbetiae_contig1644:13930..14044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 13931..14044 -
1691683033.2507625-CDS-L-elsbetiae_contig1644:13930..140441691683033.2507625-CDS-L-elsbetiae_contig1644:13930..14044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 13931..14044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1644.4374.1prot_L-elsbetiae_contig1644.4374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1644 13263..14044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1644.4374.1

>prot_L-elsbetiae_contig1644.4374.1 ID=prot_L-elsbetiae_contig1644.4374.1|Name=mRNA_L-elsbetiae_contig1644.4374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
LLPRDFQLRNSPHRHRKRERPCEGYCRRSGQHLENRSVPCRFSLVRARLA
NDDEDPEMSPFLMESVSHESSQKTSKLRQLASVYGVMATYVDSRDLRCPE
PSDEYNSGGGGGGGGSGGVVPAEHEGGPPRYYAPPRLAAMTKGRILQLFG
PEHCVKLGLERLTG
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mRNA from alignment at L-elsbetiae_contig1644:13263..14044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1644.4374.1 ID=mRNA_L-elsbetiae_contig1644.4374.1|Name=mRNA_L-elsbetiae_contig1644.4374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=782bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:13263..14044- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTTCCGAGGGATTTTCAGCTCAGAAACTCTCCGCATCGCCATCGAAA
ACGAGAGAGGCCTTGTGAAGGTTACTGCAGGCGGTCGGGGCAACACCTCG
AAAACCGTAGCGTGGTGCGTGGAGTTTGGTCTTCGGGTTTGCCGAGAGGG
GGGCTTGAAGGTGTGTTTTAACTTAACGATCGGCCGTGGTTTCTGCCGCG
GCTGGGGGTCGCAGACCTCTCCAGGTTGAACCCAGGGATCCAGAGGCCCA
TTTTGGCACTTTCGGCTCCGCACGCATTGCGGAAACACGTAGAGCGGCGC
AATTGAACCTTGTTGTGGCGTATCTTATATGGACCCCTCCCCCCCTCGCG
CCTTGTCTGGATCACCCCCACCGCTTTCCGCGCCGATTTTGTATCACTCA
CAAGCCGTGCCGCTTTTCGCTGGTTCGAGCGAGGCTCGCCAACGATGATG
AAGATCCCGAGATGTCCCCATTTCTCATGGAGTCTGTCTCCCATGAGAGC
TCTCAGAAGACCTCGAAGCTGAGGCAGCTTGCCTCCGTGTACGGCGTCAT
GGCTACCTATGTGGACAGTCGCGACTTGCGGTGCCCAGAGCCCTCCGATG
AATACAACAGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGGGGCGTAGTG
CCCGCAGAACACGAGGGTGGTCCACCTCGGTACTATGCCCCTCCGAGGTT
GGCTGCGATGACCAAGGGCAGAATCTTGCAGCTGTTTGGTCCGGAGCACT
GCGTGAAGCTCGGGCTAGAGCGCTTGACCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1644:13263..14044-

>mRNA_L-elsbetiae_contig1644.4374.1 ID=mRNA_L-elsbetiae_contig1644.4374.1|Name=mRNA_L-elsbetiae_contig1644.4374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:13263..14044- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTTCCGAGGGATTTTCAGCTCAGAAACTCTCCGCATCGCCATCGAAA
ACGAGAGAGGCCTTGTGAAGGTTACTGCAGGCGGTCGGGGCAACACCTCG
AAAACCGTAGCGTGCTTCTTCCGAGGGATTTTCAGCTCAGAAACTCTCCG
CATCGCCATCGAAAACGAGAGAGGCCTTGTGAAGGTTACTGCAGGCGGTC
GGGGCAACACCTCGAAAACCGTAGCGTGCCGTGCCGCTTTTCGCTGGTTC
GAGCGAGGCTCGCCAACGATGATGAAGATCCCGAGATGTCCCCATTTCTC
ATGGAGTCTGTCTCCCATGAGAGCTCTCAGAAGACCTCGAAGCTGAGGCA
GCTTGCCTCCGTGTACGGCGTCATGGCTACCTATGTGGACAGTCGCGACT
TGCGGTGCCCAGAGCCCTCCGATGAATACAACAGCGGCGGCGGCGGCGGC
GGCGGCGGCAGTGGGGGCGTAGTGCCCGCAGAACACGAGGGTGGTCCACC
TCGGTACTATGCCCCTCCGAGGTTGGCTGCGATGACCAAGGGCAGAATCT
TGCAGCTGTTTGGTCCGGAGCACTGCGTGAAGCTCGGGCTAGAGCGCTTG
ACCGGGCCGTGCCGCTTTTCGCTGGTTCGAGCGAGGCTCGCCAACGATGA
TGAAGATCCCGAGATGTCCCCATTTCTCATGGAGTCTGTCTCCCATGAGA
GCTCTCAGAAGACCTCGAAGCTGAGGCAGCTTGCCTCCGTGTACGGCGTC
ATGGCTACCTATGTGGACAGTCGCGACTTGCGGTGCCCAGAGCCCTCCGA
TGAATACAACAGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGGGGCGTAG
TGCCCGCAGAACACGAGGGTGGTCCACCTCGGTACTATGCCCCTCCGAGG
TTGGCTGCGATGACCAAGGGCAGAATCTTGCAGCTGTTTGGTCCGGAGCA
CTGCGTGAAGCTCGGGCTAGAGCGCTTGACCGGG
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