mRNA_L-elsbetiae_contig1644.4373.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1644.4373.1
Unique NamemRNA_L-elsbetiae_contig1644.4373.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1644.4373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1644contigL-elsbetiae_contig1644:10274..12627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1644.4373.1prot_L-elsbetiae_contig1644.4373.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1644 10274..12627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.7563024-CDS-L-elsbetiae_contig1644:10273..103181622815679.7563024-CDS-L-elsbetiae_contig1644:10273..10318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 10274..10318 -
1691683033.316854-CDS-L-elsbetiae_contig1644:10273..103181691683033.316854-CDS-L-elsbetiae_contig1644:10273..10318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 10274..10318 -
1622815679.7700047-CDS-L-elsbetiae_contig1644:11360..115401622815679.7700047-CDS-L-elsbetiae_contig1644:11360..11540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 11361..11540 -
1691683033.326297-CDS-L-elsbetiae_contig1644:11360..115401691683033.326297-CDS-L-elsbetiae_contig1644:11360..11540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 11361..11540 -
1622815679.7821667-CDS-L-elsbetiae_contig1644:12528..126271622815679.7821667-CDS-L-elsbetiae_contig1644:12528..12627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 12529..12627 -
1691683033.333841-CDS-L-elsbetiae_contig1644:12528..126271691683033.333841-CDS-L-elsbetiae_contig1644:12528..12627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 12529..12627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1644.4373.1

>prot_L-elsbetiae_contig1644.4373.1 ID=prot_L-elsbetiae_contig1644.4373.1|Name=mRNA_L-elsbetiae_contig1644.4373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GIVHISSSSPAPCKKRILAVMNCLVKKPHLVQKVDTIDASFMRNVASPAK
LREWARLGGAREGAIQVLPVWQIPCVLVLNTEGSVDETAVNTVSGAISEA
AEQWQQSH
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mRNA from alignment at L-elsbetiae_contig1644:10274..12627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1644.4373.1 ID=mRNA_L-elsbetiae_contig1644.4373.1|Name=mRNA_L-elsbetiae_contig1644.4373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2354bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:10274..12627- (Laminarionema elsbetiae ELsaHSoW15)
GGAATCGTGCATATTTCCAGCAGCTCGCCAGCGCCGTGCAAGAAGCGCAT
CCTCGCCGTCATGAACTGCTTAGTGAAAAAGCCCCATTTAGTCCAGAAGG
TGAGCCCTGCACACCCAGGCTCGCTCCGAAGCCAATGCTAGTACTCCAAT
ACACGGGGACGCGTGCAGCTGCAAGAGTGGAGAAACGGGGCACTTCTTCA
CGCCCTTCTGGAGACGTGTCTGTCGCGTTGGTTCGGTGTAGCTTAAGTTG
GCCGAGACAAAAAAGTTGATTGTGAACGCTTGCTTTAATGTCCCTTGGCT
AGGTTACGAATGCTTGGAGCTGGAGAGTGGTCGAAAGGTACTCCGGGGAT
GAAAAGGGTCCTCAAAAGGCGGGTCAGTGTGTGTGTGTGCCTGTTTGGCC
TGTGTGGGTTCTTGACTAGCATCGACCGCTCTAACCGGCCGGCTGACCAC
TGAAAATATGCTAGCCTTGGCGGGGAAAAAACTCAAGGAGCCTTTGCTAC
GTGTCGGGACCCCTCGCTTCGACAGCAACTTTTTTAAATGGTAGACATTC
CGTTTCAAGCGAAGGCAGGCATGCACACCACTGAAGAGTGCAGTGTGCTG
TGCGTGTGGTTGCTTCCACCTTTTCTGACGCCAATCCTATCAGGATTTGT
TTTCTCCATTACGCCCCCCCCCCCCGCCCCTGCGGTGCACGCGTTTAACC
TTCAACGCGATGGGAGTGCGGGAGTTTTTGCTCTCTTTTTCTGGTACGCT
CATGGACTACGCACATCTCACGGCGAAGAGTGCGATTTTGTCACCTCGAG
AGAGACTCCAAACCGCAACCTCGATGCCAAAACTTTCACGAGGTTGCCAA
CTAGACACACGGCGGCACAAACGTCGTACCAGTTTGGTGTGAACCCGCCG
TCTTCCAGCCGCATAGGCAGCAGGATCGCGGTGGCCGGGGTGAGAGAACC
AGCGCTCTTGTTCGAAGTGGGACGGAAATTCATTTTGTCCGTCCCGTACC
GTGATCTCTCCCCCTTTTTCCATCCCCGTATCTTGCATCTTTGCGTGTGC
CTCCACTCGAACGTTGGTGATCGCGAGTGGAGTTCAGGTGGACACGATCG
ACGCGAGCTTCATGCGCAACGTGGCGTCGCCCGCCAAGCTTCGGGAGTGG
GCTCGGCTGGGGGGGGCGCGAGAAGGAGCCATCCAGGTGTTGCCGGTGTG
GCAGATACCCTGCGTGTTGGTGCTGAACACCGAGGGCTCGGTCGACGAGA
CCGCCGTGAACACGGTGGTAAGTCGACGATGGTGTGTATGTACCTATGCC
GACCGTGTGTACCGTGTATGTAGCGTATGACATCCGACCGTTTCTTAGAT
CGATATCTTTCACGGGACAGGAGGGACTTCCAACGAATACGGCGGCGTTG
GAAATGCCTCATCGAGCGAGAGCTTTTGTAAGACTTCGCTGATCTCTCGG
TGCCTCCTGTGTTGTGGGGCAAAATCCAGGTCTGGAACCGAGCGAGGGGG
ATGTTTGTGGTTTGTAGGGCTCCCACGTTTTGTGTGTGTTGTGTATGCTG
TGTGCTTTCGTCCCCATCTACTGTGGCGTCTGTCCGCCGATTTAGGTGTG
CTACACGCTTTGGTGTATTACACTATTTACACGTTTCGGGGTGTGTTCTC
TGTGCAACTAGACAGGTAACAGCCCGGGTCACACAACCGGGGAGTTGTTA
CACTGAGGTTTTATTCTTCTTTTCCTTTTTAATTTTTGCCAGACCTTCCT
CCTGCGGTGCTTGCCTTCATTTTTTTAGTGAGAAGGGTGTAGCCGTCCCT
TGCCCTCGTCGACGGTGAAGTCGAGGTTTGTTTACTTCCGAACTTTTCAG
CCTTTGCTTTTTTCGCGTTCTACTGCAATGACGAAAACATCCCCAGTGGG
AACTGGGGACCCAACTCCGGACCTTGCCGCTAGTGGGTTCCCGAGGGACC
CACTAGTCCACCGGGGCGACCATTGTACAGAAGGCAAAGAAAAGGCAAAC
CATATCCGCCATTTCAGCATCAATACCGGTAGTTTAACATCTATGAGAGA
GTCAGAGACCAAGGCTGATTTGCTTGACTTCGCTTTTTACTTGGGAACTC
ATTGCCTTGCATCACCAGAAAAGTGCCGGCATCTACCCCGAAACCAACTA
CTAAATAGCAGTTGCTGCGATAGTCAAACCGACGTGAAGCGTCGCAATCG
GTGCATAAAATGACGGCAAAATACCAACTGCACTCCCCGACACATTCAGA
GCAGAACCCCTCAGTCATTCTCCCACGTTTTTTTCGTTTTTTCTCCCCGC
TCTCGAAAGTCTGGCGCTATCAGCGAAGCAGCGGAGCAGTGGCAGCAGAG
CCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1644:10274..12627-

>mRNA_L-elsbetiae_contig1644.4373.1 ID=mRNA_L-elsbetiae_contig1644.4373.1|Name=mRNA_L-elsbetiae_contig1644.4373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:10274..12627- (Laminarionema elsbetiae ELsaHSoW15)
GGAATCGTGCATATTTCCAGCAGCTCGCCAGCGCCGTGCAAGAAGCGCAT
CCTCGCCGTCATGAACTGCTTAGTGAAAAAGCCCCATTTAGTCCAGAAGG
GAATCGTGCATATTTCCAGCAGCTCGCCAGCGCCGTGCAAGAAGCGCATC
CTCGCCGTCATGAACTGCTTAGTGAAAAAGCCCCATTTAGTCCAGAAGGT
GGACACGATCGACGCGAGCTTCATGCGCAACGTGGCGTCGCCCGCCAAGC
TTCGGGAGTGGGCTCGGCTGGGGGGGGCGCGAGAAGGAGCCATCCAGGTG
TTGCCGGTGTGGCAGATACCCTGCGTGTTGGTGCTGAACACCGAGGGCTC
GGTCGACGAGACCGCCGTGAACACGGTGGTGGACACGATCGACGCGAGCT
TCATGCGCAACGTGGCGTCGCCCGCCAAGCTTCGGGAGTGGGCTCGGCTG
GGGGGGGCGCGAGAAGGAGCCATCCAGGTGTTGCCGGTGTGGCAGATACC
CTGCGTGTTGGTGCTGAACACCGAGGGCTCGGTCGACGAGACCGCCGTGA
ACACGGTGTCTGGCGCTATCAGCGAAGCAGCGGAGCAGTGGCAGCAGAGC
CACTCTGGCGCTATCAGCGAAGCAGCGGAGCAGTGGCAGCAGAGCCAC
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