mRNA_L-elsbetiae_contig16429.4367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16429.4367.1
Unique NamemRNA_L-elsbetiae_contig16429.4367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16429.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16429contigL-elsbetiae_contig16429:1993..3301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16429.4367.1prot_L-elsbetiae_contig16429.4367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16429 2048..3275 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.0071478-UTR-L-elsbetiae_contig16429:1992..20471622815679.0071478-UTR-L-elsbetiae_contig16429:1992..2047Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 1993..2047 +
1691683032.894572-UTR-L-elsbetiae_contig16429:1992..20471691683032.894572-UTR-L-elsbetiae_contig16429:1992..2047Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 1993..2047 +
1622815679.043175-UTR-L-elsbetiae_contig16429:3275..33011622815679.043175-UTR-L-elsbetiae_contig16429:3275..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 3276..3301 +
1691683032.9260597-UTR-L-elsbetiae_contig16429:3275..33011691683032.9260597-UTR-L-elsbetiae_contig16429:3275..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 3276..3301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.0199192-CDS-L-elsbetiae_contig16429:2047..25311622815679.0199192-CDS-L-elsbetiae_contig16429:2047..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 2048..2531 +
1691683032.903601-CDS-L-elsbetiae_contig16429:2047..25311691683032.903601-CDS-L-elsbetiae_contig16429:2047..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 2048..2531 +
1622815679.032083-CDS-L-elsbetiae_contig16429:3261..32751622815679.032083-CDS-L-elsbetiae_contig16429:3261..3275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 3262..3275 +
1691683032.9148524-CDS-L-elsbetiae_contig16429:3261..32751691683032.9148524-CDS-L-elsbetiae_contig16429:3261..3275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 3262..3275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16429.4367.1

>prot_L-elsbetiae_contig16429.4367.1 ID=prot_L-elsbetiae_contig16429.4367.1|Name=mRNA_L-elsbetiae_contig16429.4367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MVDLEEHSRSSSGGVSGSELGRPGSTAASGSTVRRAGAGEKRRGGRPLQA
RARAPSGGGSRGSRKRARANVEALVTATSVKAAGDAGPNSAEDDCYSEPD
DVPVKTEVGVLAKVDPEAKRRVESTAEERATPAEYGPGSAQDASVKTEVL
VSSPSKRTAGGGQRK*
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mRNA from alignment at L-elsbetiae_contig16429:1993..3301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16429.4367.1 ID=mRNA_L-elsbetiae_contig16429.4367.1|Name=mRNA_L-elsbetiae_contig16429.4367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1309bp|location=Sequence derived from alignment at L-elsbetiae_contig16429:1993..3301+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGAGGTGGGGGGGGAAGCTGCTGTGGTCTGCGCCGCCGATGCTAAAG
AAGGCATGGTAGATCTGGAGGAACATAGCCGCTCCAGTTCGGGAGGCGTT
TCTGGCAGCGAGCTTGGGCGACCTGGCTCAACAGCAGCGAGTGGGAGTAC
CGTTCGCCGCGCTGGTGCCGGCGAGAAACGCAGAGGGGGGCGTCCTCTGC
AGGCCCGGGCACGGGCACCGTCGGGTGGCGGAAGCAGGGGAAGCCGCAAG
CGAGCCCGTGCGAATGTCGAAGCGCTTGTGACGGCAACCTCAGTCAAAGC
AGCGGGAGATGCTGGCCCAAACTCAGCGGAGGACGATTGCTACTCGGAGC
CCGACGACGTTCCGGTAAAGACGGAAGTTGGGGTCTTGGCCAAGGTGGAC
CCAGAGGCAAAGCGCAGAGTCGAATCAACAGCCGAAGAGCGGGCCACGCC
CGCCGAGTATGGTCCTGGTTCGGCACAAGATGCCTCGGTGAAGACGGAAG
TGTTGGTTTCTTCCCCGTCCAAGCGCACGGCAGGTGGAGGTCAGTTGAAG
ACGATCGCTGATGGTTTGGTGCAGTCTATCTATCGACAGTTCTATGCAGT
CAAGCGTAGATACATATATAACTTCCTTCGCAAGGAAGTCGTCGCCAAGT
AGCCATGTTTTTCTCATGCTTATACGCATGCTGCGGAATGTCAATTTGAC
CGCACAGGCTGCCACCTGCTGTACACAAACTTGAAAACCGGCAGGCAGGT
TTCCCGGTCCAGTGGCACTGAGACCGCTAATTTTCCCCCAGCGCTCTTTT
CATGCATACCTTGGTGCATCTTTCGGACTTGCATTAATTGTAAAAGGCCG
GGCGGCTGTTGAATAAACTCGACTGAAATAATTTTCAACTTCGAACAGAT
TTTGCATGCCCGGCTTAACGTGTCTTCTGGTGTCTACTTGAGCGATGACC
CCGAGGGTATTGACTACCTTGCCGTGCACATTTGGAAGGGAAGTGAACGA
AGCATCGCCTTAGTGTAGTCCGAAAATAGAGCTTATTTTGTCCTGTTTTC
TCGTCCGTGAACTTTATTCGTCAACCTGTTGTGGCGATTCTGGATGTTTG
CCAAGCGGCTGGGGCATGGGGAGGGGTGGCGTTAGGAGCGTCCCCGCATC
TGACTGACGCGTTGTGGCATGGCAAAAAAACTCAATGAGGCGATGCTCCC
TACAATTGTCGTTCTTAGTTCAACTTGCTACCCGTCGTTCGTGCTGTGGT
GCTGCGCTCGTGTGACCAGGTCAGCGTAAGTGAGGAGGATGAGAACGTAT
GAGGCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16429:1993..3301+

>mRNA_L-elsbetiae_contig16429.4367.1 ID=mRNA_L-elsbetiae_contig16429.4367.1|Name=mRNA_L-elsbetiae_contig16429.4367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig16429:1993..3301+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGATCTGGAGGAACATAGCCGCTCCAGTTCGGGAGGCGTTTCTGG
CAGCGAGCTTGGGCGACCTGGCTCAACAGCAGCGAGTGGGAGTACCGTTC
GCCGCGCTGGTGCCGGCGAGAAACGCAGAGGGGGGCGTCCTCTGCAGGCC
CGGGCACGGGCACCGTCGGGTGGCGGAAGCAGGGGAAGCCGCAAGCGAGC
CCGTGCGAATGTCGAAGCGCTTGTGACGGCAACCTCAGTCAAAGCAGCGG
GAGATGCTGGCCCAAACTCAGCGGAGGACGATTGCTACTCGGAGCCCGAC
GACGTTCCGGTAAAGACGGAAGTTGGGGTCTTGGCCAAGGTGGACCCAGA
GGCAAAGCGCAGAGTCGAATCAACAGCCGAAGAGCGGGCCACGCCCGCCG
AGTATGGTCCTGGTTCGGCACAAGATGCCTCGGTGAAGACGGAAGTGTTG
GTTTCTTCCCCGTCCAAGCGCACGGCAGGTGGAGATGGTAGATCTGGAGG
AACATAGCCGCTCCAGTTCGGGAGGCGTTTCTGGCAGCGAGCTTGGGCGA
CCTGGCTCAACAGCAGCGAGTGGGAGTACCGTTCGCCGCGCTGGTGCCGG
CGAGAAACGCAGAGGGGGGCGTCCTCTGCAGGCCCGGGCACGGGCACCGT
CGGGTGGCGGAAGCAGGGGAAGCCGCAAGCGAGCCCGTGCGAATGTCGAA
GCGCTTGTGACGGCAACCTCAGTCAAAGCAGCGGGAGATGCTGGCCCAAA
CTCAGCGGAGGACGATTGCTACTCGGAGCCCGACGACGTTCCGGTAAAGA
CGGAAGTTGGGGTCTTGGCCAAGGTGGACCCAGAGGCAAAGCGCAGAGTC
GAATCAACAGCCGAAGAGCGGGCCACGCCCGCCGAGTATGGTCCTGGTTC
GGCACAAGATGCCTCGGTGAAGACGGAAGTGTTGGTTTCTTCCCCGTCCA
AGCGCACGGCAGGTGGAGGTCAGCGTAAGTGAGTCAGCGTAAGTGA
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