mRNA_L-elsbetiae_contig16429.4366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16429.4366.1
Unique NamemRNA_L-elsbetiae_contig16429.4366.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16429.4366.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.250e-5
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  115 GGTMPRTCASLNCTKRPSYGKAGSK-REYCRDHAKDGMVNV 234
            GG+    C   NCTKRP+YG AGSK RE+C  HA+DGMVNV
Sbjct:   57 GGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNV 97
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BLAST of mRNA_L-elsbetiae_contig16429.4366.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.270e-5
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  136 CASLNCTKRPSYGKAGSK-REYCRDHAKDGMVNV 234
            C   NCTKRP+YG AGSK RE+C  HA+DGMVNV
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNV 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16429.4366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE2.250e-563.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI7.270e-570.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16429contigL-elsbetiae_contig16429:804..1960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1158
Cds size708
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.0824463-UTR-L-elsbetiae_contig16429:803..12521622815679.0824463-UTR-L-elsbetiae_contig16429:803..1252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 804..1252 +
1691683032.934605-UTR-L-elsbetiae_contig16429:803..12521691683032.934605-UTR-L-elsbetiae_contig16429:803..1252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16429 804..1252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.0966234-CDS-L-elsbetiae_contig16429:1252..19601622815679.0966234-CDS-L-elsbetiae_contig16429:1252..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 1253..1960 +
1691683032.9434946-CDS-L-elsbetiae_contig16429:1252..19601691683032.9434946-CDS-L-elsbetiae_contig16429:1252..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16429 1253..1960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16429.4366.1prot_L-elsbetiae_contig16429.4366.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16429 1253..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16429.4366.1

>prot_L-elsbetiae_contig16429.4366.1 ID=prot_L-elsbetiae_contig16429.4366.1|Name=mRNA_L-elsbetiae_contig16429.4366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
MVNVTNNVCSHHGCATQPSYGKAGSSRREYCRGHAKDGMVGVTTRKTCAH
PRCNKHPLYGKARGKAELCAEHAKGEKVDVQTKKCGRSGCSKKPSYGKAG
GKAELCAEHAEDGMTNVVAKRCGRSGCNKRPLYGNVGGKAELCAEHAKDE
MVDVKTKKCSRSGCSKRPSYGKAGGKAELCAEHAEDGMMNVVSKRCSRSE
CVTLTSDGKVGGKVELCSEHAKDGMVGAVSERKRIC
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mRNA from alignment at L-elsbetiae_contig16429:804..1960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16429.4366.1 ID=mRNA_L-elsbetiae_contig16429.4366.1|Name=mRNA_L-elsbetiae_contig16429.4366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1157bp|location=Sequence derived from alignment at L-elsbetiae_contig16429:804..1960+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCTATGCCTATGGGTATGACTATAATATAAAACAAGAGGCCAAGGCGT
ATACCTCTCGAGTGCACTGGCCATTCACGCCCTCACCAATACAACGCACA
CCAGATAAGGAGCAGGAGGAACGATGCCACGGACATGTGCCTCGCTAAAT
TGCACCAAGCGGCCGTCATACGGCAAAGCTGGCAGCAAGCGAGAGTACTG
CCGTGACCATGCCAAGGATGGGATGGTGAACGTCACCGGCAAGACATGCA
CACACCCAGGTTGCACCAAGCGCTCGATATTCGGCAAGGCTGGCAGCAAA
CCAGAGTTCTGCCGTGACCATGCCAAAAGGATGGGACGGTGAACGTCGCC
AGCAAGACATGCACACACCCAGGTTGCACCAAGCAACAACCGTCATACGC
CACGGCTGGTAGCAAGCCAGAGTACTGTCGTGGCCATGCAGAGGACGGGA
TGGTAAATGTCACCAACAATGTTTGCTCCCACCACGGTTGTGCTACGCAG
CCGTCATACGGCAAAGCTGGCAGCAGCAGGCGAGAGTATTGCCGTGGCCA
TGCTAAGGACGGGATGGTGGGCGTCACCACCAGGAAGACATGCGCACATC
CACGATGTAACAAACACCCGTTGTACGGCAAGGCTAGGGGGAAAGCGGAG
CTCTGCGCGGAGCATGCGAAGGGCGAAAAGGTGGATGTCCAAACTAAGAA
GTGTGGCCGAAGCGGATGTAGCAAGAAACCGTCGTACGGCAAGGCTGGGG
GAAAGGCAGAGCTTTGCGCCGAGCACGCCGAGGATGGGATGACGAATGTT
GTTGCCAAGAGATGTGGCCGCAGCGGGTGCAACAAGCGCCCATTATATGG
CAATGTTGGGGGGAAAGCGGAGCTCTGCGCGGAGCATGCGAAGGACGAAA
TGGTGGATGTCAAAACTAAGAAGTGTAGCCGAAGCGGATGTAGCAAGAGA
CCGTCGTACGGCAAGGCTGGGGGAAAGGCAGAGCTTTGCGCCGAGCACGC
CGAGGATGGGATGATGAACGTTGTCAGCAAGAGATGTAGCCGCAGCGAGT
GCGTGACACTTACGTCCGACGGCAAGGTTGGGGGAAAGGTGGAGCTTTGC
TCTGAGCATGCCAAGGACGGGATGGTGGGCGCCGTCAGCGAGAGGAAGAG
GATATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16429:804..1960+

>mRNA_L-elsbetiae_contig16429.4366.1 ID=mRNA_L-elsbetiae_contig16429.4366.1|Name=mRNA_L-elsbetiae_contig16429.4366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig16429:804..1960+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAAATGTCACCAACAATGTTTGCTCCCACCACGGTTGTGCTACGCA
GCCGTCATACGGCAAAGCTGGCAGCAGCAGGCGAGAGTATTGCCGTGGCC
ATGCTAAGGACGGGATGGTGGGCGTCACCACCAGGAAGACATGCGCACAT
CCACGATGTAACAAACACCCGTTGTACGGCAAGGCTAGGGGGAAAGCGGA
GCTCTGCGCGGAGCATGCGAAGGGCGAAAAGGTGGATGTCCAAACTAAGA
AGTGTGGCCGAAGCGGATGTAGCAAGAAACCGTCGTACGGCAAGGCTGGG
GGAAAGGCAGAGCTTTGCGCCGAGCACGCCGAGGATGGGATGACGAATGT
TGTTGCCAAGAGATGTGGCCGCAGCGGGTGCAACAAGCGCCCATTATATG
GCAATGTTGGGGGGAAAGCGGAGCTCTGCGCGGAGCATGCGAAGGACGAA
ATGGTGGATGTCAAAACTAAGAAGTGTAGCCGAAGCGGATGTAGCAAGAG
ACCGTCGTACGGCAAGGCTGGGGGAAAGGCAGAGCTTTGCGCCGAGCACG
CCGAGGATGGGATGATGAACGTTGTCAGCAAGAGATGTAGCCGCAGCGAG
TGCGTGACACTTACGTCCGACGGCAAGGTTGGGGGAAAGGTGGAGCTTTG
CTCTGAGCATGCCAAGGACGGGATGGTGGGCGCCGTCAGCGAGAGGAAGA
GGATATGCATGGTAAATGTCACCAACAATGTTTGCTCCCACCACGGTTGT
GCTACGCAGCCGTCATACGGCAAAGCTGGCAGCAGCAGGCGAGAGTATTG
CCGTGGCCATGCTAAGGACGGGATGGTGGGCGTCACCACCAGGAAGACAT
GCGCACATCCACGATGTAACAAACACCCGTTGTACGGCAAGGCTAGGGGG
AAAGCGGAGCTCTGCGCGGAGCATGCGAAGGGCGAAAAGGTGGATGTCCA
AACTAAGAAGTGTGGCCGAAGCGGATGTAGCAAGAAACCGTCGTACGGCA
AGGCTGGGGGAAAGGCAGAGCTTTGCGCCGAGCACGCCGAGGATGGGATG
ACGAATGTTGTTGCCAAGAGATGTGGCCGCAGCGGGTGCAACAAGCGCCC
ATTATATGGCAATGTTGGGGGGAAAGCGGAGCTCTGCGCGGAGCATGCGA
AGGACGAAATGGTGGATGTCAAAACTAAGAAGTGTAGCCGAAGCGGATGT
AGCAAGAGACCGTCGTACGGCAAGGCTGGGGGAAAGGCAGAGCTTTGCGC
CGAGCACGCCGAGGATGGGATGATGAACGTTGTCAGCAAGAGATGTAGCC
GCAGCGAGTGCGTGACACTTACGTCCGACGGCAAGGTTGGGGGAAAGGTG
GAGCTTTGCTCTGAGCATGCCAAGGACGGGATGGTGGGCGCCGTCAGCGA
GAGGAAGAGGATATGC
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