mRNA_L-elsbetiae_contig16428.4365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16428.4365.1
Unique NamemRNA_L-elsbetiae_contig16428.4365.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.120e-27
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV 210
            RSI+LKSSQLSLLTPCAEVL+LVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV
Sbjct:  227 RSIVLKSSQLSLLTPCAEVLSLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV 286
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.150e-25
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAE---VLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV 210
            RSILLKSSQLSLLTPCAE   VL LVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV
Sbjct:  422 RSILLKSSQLSLLTPCAEASIVLTLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV 484
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.480e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVH 198
            R ILL+SSQL LLT  AEVL  +LYPL W+HVYIPVLPE L+GVL APMPF++GVH
Sbjct:  276 RCILLRSSQLFLLTAAAEVLTTLLYPLCWTHVYIPVLPEPLMGVLGAPMPFIVGVH 331
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A0G4IP83_PLABS (UDENN domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IP83_PLABS)

HSP 1 Score: 75.5 bits (184), Expect = 2.650e-14
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRSFV 210
            R ++L SSQ SLLTP  E   L++YP  W HVYIP+LPEALL  L APMP+LIG H SFV
Sbjct:  324 RKVVLLSSQYSLLTPVVETFLLLMYPFRWQHVYIPLLPEALLDFLNAPMPYLIGTHLSFV 383
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: S4RUT0_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUT0_PETMA)

HSP 1 Score: 70.5 bits (171), Expect = 4.430e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRS 204
            R I++ SS++S L+ C   LAL+LYP+SW HVYIP+LP  LL   +APMPFLIGVH S
Sbjct:  172 RRIIVTSSKISTLSSCIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVHSS 229
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: S4RUS8_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUS8_PETMA)

HSP 1 Score: 70.5 bits (171), Expect = 5.450e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRS 204
            R I++ SS++S L+ C   LAL+LYP+SW HVYIP+LP  LL   +APMPFLIGVH S
Sbjct:  188 RRIIVTSSKISTLSSCIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVHSS 245
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A482T435_9ARCH (UDENN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T435_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 5.900e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRS 204
            R +LL SSQ SLLT CAE +  +LYPL+WSH YIP+LP  LLGVL AP PFL+G+  +
Sbjct:  283 RQVLLISSQYSLLTICAESIMSLLYPLTWSHAYIPILPSRLLGVLGAPFPFLLGLPSA 340
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A7S1V8A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8A3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.990e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRS 204
            R +LL S+QLSLLT C+EVL  +L+P+ WSH YIPVLP  L+ +L+APMPFL G+ ++
Sbjct:    1 RQVLLTSTQLSLLTVCSEVLIALLFPMKWSHAYIPVLPHFLVPMLSAPMPFLCGIDKA 58
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BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.020e-13
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHR 201
            R IL++SSQ SLLT   EV+  +LYP  WSHVYIP+LP+A+L VL AP+PF+IGVH 
Sbjct:  234 RQILVRSSQRSLLTTFGEVMRALLYPFCWSHVYIPLLPKAMLMVLQAPLPFMIGVHE 290
[Close]
BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Match: A0A7S1YCL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCL3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.100e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   31 RSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHRS 204
            R +LL S+QLSLLT C+EVL  +L+P+ WSH YIPVLP  L+ +L+APMPFL G+ ++
Sbjct:    1 RQVLLTSTQLSLLTVCSEVLIALLFPMKWSHAYIPVLPHFLVPMLSAPMPFLCGIDKA 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16428.4365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMH7_ECTSI5.120e-2796.67UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JMA5_9PHAE2.150e-2593.65UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA2.480e-1673.21UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0G4IP83_PLABS2.650e-1463.33UDENN domain-containing protein n=1 Tax=Plasmodiop... [more]
S4RUT0_PETMA4.430e-1360.34UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
S4RUS8_PETMA5.450e-1360.34UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
A0A482T435_9ARCH5.900e-1362.07UDENN domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S1V8A3_9STRA5.990e-1358.62Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2RHS4_9STRA6.020e-1363.16Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1YCL3_9STRA8.100e-1358.62Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16428contigL-elsbetiae_contig16428:679..1169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue6.3e-23
Seed eggNOG ortholog2880.D7FMH7
KEGG koko:K20163
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.9477732-CDS-L-elsbetiae_contig16428:678..7621622815678.9477732-CDS-L-elsbetiae_contig16428:678..762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16428 679..762 +
1691683032.8733087-CDS-L-elsbetiae_contig16428:678..7621691683032.8733087-CDS-L-elsbetiae_contig16428:678..762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16428 679..762 +
1622815678.961088-CDS-L-elsbetiae_contig16428:1043..11691622815678.961088-CDS-L-elsbetiae_contig16428:1043..1169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16428 1044..1169 +
1691683032.885957-CDS-L-elsbetiae_contig16428:1043..11691691683032.885957-CDS-L-elsbetiae_contig16428:1043..1169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16428 1044..1169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16428.4365.1prot_L-elsbetiae_contig16428.4365.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16428 679..1169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16428.4365.1

>prot_L-elsbetiae_contig16428.4365.1 ID=prot_L-elsbetiae_contig16428.4365.1|Name=mRNA_L-elsbetiae_contig16428.4365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
LLLLLGIYPRRSILLKSSQLSLLTPCAEVLALVLYPLSWSHVYIPVLPEA
LLGVLAAPMPFLIGVHRSFV
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mRNA from alignment at L-elsbetiae_contig16428:679..1169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16428.4365.1 ID=mRNA_L-elsbetiae_contig16428.4365.1|Name=mRNA_L-elsbetiae_contig16428.4365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig16428:679..1169+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTTGCTACTCGGTATATACCCTCGAAGGTCCATCCTGCTGAAGAG
CTCGCAGCTCAGCCTCCTCACGCCCTGCGCCGAGGTGAGACGGAAGTAGG
CGTTTTTCTCTGGCCAACTAGATACATACATAACTTAGAGGAGGAACTGA
CGATTTCAGGGTTCCGTAGGGATAGTAATTTTCGCGTGTGTGTGTCCGCG
TTGGCTTCGGTGTGTTTGCTTTATGTATGCGTATGTTTTTTGCCTTGCTC
TTCTGAAGACAAGGCTGCTTCGAGTGGCCTTGGACACTACTATGATGCGT
CAGCACACCGCCCACCAGCAAGTTTCCACTGATTCACCGTGCCCCCCCCG
GGGGGCGCAACGCAGGTGCTGGCCCTCGTGCTGTACCCCTTGAGCTGGAG
CCACGTCTACATCCCCGTGCTGCCGGAGGCCTTGCTGGGGGTGCTCGCGG
CGCCGATGCCGTTCCTGATAGGAGTTCACAGGAGCTTCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16428:679..1169+

>mRNA_L-elsbetiae_contig16428.4365.1 ID=mRNA_L-elsbetiae_contig16428.4365.1|Name=mRNA_L-elsbetiae_contig16428.4365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig16428:679..1169+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTTGCTACTCGGTATATACCCTCGAAGGTCCATCCTGCTGAAGAG
CTCGCAGCTCAGCCTCCTCACGCCCTGCGCCGAGCTCCTCTTGCTACTCG
GTATATACCCTCGAAGGTCCATCCTGCTGAAGAGCTCGCAGCTCAGCCTC
CTCACGCCCTGCGCCGAGGTGCTGGCCCTCGTGCTGTACCCCTTGAGCTG
GAGCCACGTCTACATCCCCGTGCTGCCGGAGGCCTTGCTGGGGGTGCTCG
CGGCGCCGATGCCGTTCCTGATAGGAGTTCACAGGAGCTTCGTGGTGCTG
GCCCTCGTGCTGTACCCCTTGAGCTGGAGCCACGTCTACATCCCCGTGCT
GCCGGAGGCCTTGCTGGGGGTGCTCGCGGCGCCGATGCCGTTCCTGATAG
GAGTTCACAGGAGCTTCGTG
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