mRNA_L-elsbetiae_contig16417.4362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16417.4362.1
Unique NamemRNA_L-elsbetiae_contig16417.4362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16417.4362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16417contigL-elsbetiae_contig16417:176..2715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16417.4362.1prot_L-elsbetiae_contig16417.4362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16417 176..2643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.6004882-CDS-L-elsbetiae_contig16417:175..4121622815678.6004882-CDS-L-elsbetiae_contig16417:175..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16417 176..412 -
1691683032.6264074-CDS-L-elsbetiae_contig16417:175..4121691683032.6264074-CDS-L-elsbetiae_contig16417:175..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16417 176..412 -
1622815678.6118507-CDS-L-elsbetiae_contig16417:2616..26431622815678.6118507-CDS-L-elsbetiae_contig16417:2616..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16417 2617..2643 -
1691683032.635293-CDS-L-elsbetiae_contig16417:2616..26431691683032.635293-CDS-L-elsbetiae_contig16417:2616..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16417 2617..2643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.6224632-UTR-L-elsbetiae_contig16417:2643..27151622815678.6224632-UTR-L-elsbetiae_contig16417:2643..2715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16417 2644..2715 -
1691683032.64535-UTR-L-elsbetiae_contig16417:2643..27151691683032.64535-UTR-L-elsbetiae_contig16417:2643..2715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16417 2644..2715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16417.4362.1

>prot_L-elsbetiae_contig16417.4362.1 ID=prot_L-elsbetiae_contig16417.4362.1|Name=mRNA_L-elsbetiae_contig16417.4362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MRTRKRSTHVLPRPTGGSRAGGRAICFFVVFIAGRPWIMTPWKPCGVGYR
VFEGASQPPPRVGFGTISVGLRRIVFVADLLGDGVGGP
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mRNA from alignment at L-elsbetiae_contig16417:176..2715-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16417.4362.1 ID=mRNA_L-elsbetiae_contig16417.4362.1|Name=mRNA_L-elsbetiae_contig16417.4362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2540bp|location=Sequence derived from alignment at L-elsbetiae_contig16417:176..2715- (Laminarionema elsbetiae ELsaHSoW15)
TAAGCGGCAGGGCTAGGAAGAGAAAGGTGATGGCGGGGCAAGACGACGGT
GGCACCAGCGGTGGCGAGGACGATGCGAACGAGGAAGAGGAGTACACACG
TGAGAACCGTATATGACACAAGATAACACACCCCCTGGACCGATTTTCAA
AGCTCAAGTACTCCGCAGCGAGAAGAGCGTCAGTCCCGAGAAGGGCAGCG
TTTTTAATTTTATCTCATCAAGAGCTGTCCGAAAACGTGTCGTTTGGTAT
TAGAATCATACTCGTCGCGAAGTAACCGAGCTTTGAAAATCGGCCCAAGG
ATGTGTTATCTTGTGTCGTATACGGTAAACGGTTAGGCGTAGATGGGAGG
ATGTGAGGTGCCCGCCGTTTCCTGTGCCTTTTGAGCTAGTGCCCACACAG
ATATATATATATTTCAAGTGGTGTGATGGGTGACCGTGGTTTGTCGTGGG
TGTCGATGCTGGCATGGCAAACGCTGGCTGAAGCGGCACTATTTTGGTAC
GCTTTGGATCAAAAGTATAACTTTTGTTTTGTTACAGAACGACAGCAAAA
AAAAGTAGTGCTTCGATTCTAATTTTAATACATATGTGACCTGACAGTTG
AAAGTTATTTGTTTTTAATCTTCACATCTATGTGCCGGTCGCCCCGGTGG
TCTAGTGGGTAACCTCGAAACCCGCTAGTAGCAAAGGTCGTGAGTTCGAA
TATCTCTGGGGTGAAATATTTGCAAATTTGCAGTTGAAAGCGAATAAAGC
TGAAAAACTCGTGAGTTAACAAACTTTGACTTCACCGTTGACGGGGGAAG
GGATAGCCCTACCCTTCTCGCGATAAAACACGAGGCACACCACCGCAGGA
GGAAAGTGGGGCAAATAACAAAAGAAAAAGAAAAAAGCCCCAGTGTTTTA
CCCCCTCCTGTGTGTGTGACCCCGGCGAATAAATCATGCTGTACAAAGAA
GCAGCACCGCAACGTGCATGTTGTACACACACCGAAACGTGTGGCAGACG
CCCGAATAACTGGGACGAAAAAAAACAACACACACACACACACACTATTG
CCAGCACTAGAGGCTCCTTGGCACGAAGGGCACATTGCCAGAGTACTTAC
TGACCCGTGGTCACACAAAAGGGTTCCTATCCCCAAGGCCCCCACACACA
CCCTTCTGCGGTGCTTGCCTAAGAATTTTTTATCGCGAGAAGGGTTCAAC
CGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTCCTTTAACAATCTCAA
AACGCTCTCCTCTTTCAGGATAACTTACAGACCCCGCCACGAAGACATGA
TACGGAATAAACTAGAGAAGAAACATAAAGGTTTGGCAGGACTTTGAACC
TGCATTTTGGTTGGAAAAGTATGTTGCAGCATTTCCTTATTTATTTGCGG
TTGTCTTTTCATTTTTAATTAATGCATACAAATGTCAGCAGCCTACGTCC
AGTCTGTGAAAAAGTCGTTCCAGAGGGAACTGTTGTAGGCATACTAACCC
CCTTCTTTCCGTCCAAGACATTCTCGCACAAAATCCGTAAATCCATTTAT
ACACAGTTCGTTGGTGAAAAATTCATTTCGAACCACTCGTTGTATGTTTG
TGCTATTTTTGTGCTGGATCGTGCCATATGGACTGGCACCGCCTGACGCT
GCACGGCCTGCCGCTCCGTGCGTCGTTTATGCTCGCAGTGTGGTGATTCA
TGCGATGAAAGCGGGGAATGTAGTGCGAGAGTCCGTCTTTGCGTACGCGA
AGCCTATTTACCACGTCTTCCATTTTTATTGTATTTATTTTTCAGTAGTC
TATATACTTCGTATACCCTTTTGAGGGTAAGTTATCCTGTGGCCACGGGG
ATTGACCGCGTCAGTGTTGGATTAGTACGCGGACTCATGGACGAGGTGTA
ATGGGTGGAGAGATCGGAACGGTTTTTAATGTCAAGACAAAAGCAGCAAC
AAGAGGGGTATAGCATGAAGGGGAAAACCTTCAGCTCCAGGTTGGGGTGA
TGTGGGGGGCGCACCTGGCCTGGCTAGCTGCCCGCCTCTCTTGCTCGTAG
AATCTTCCTCTGCTCTGACGGCTGTTCGAAAATGCTGTCGTGACCGCCGA
CAAAGCTCGCCCACCCTTAAGTCACCCTCGCGCTTTTTTGTTTGTTTGTT
TTTTTCCCTCCCGTTATTGGCTTATTCGTCGTCTGCCCCACTGGCCCCCT
TCCTCCACTACGACTGGCTAAACTTAAACTCGTGTTGGTCTGTGGCTCTG
TTCATGCCCGTACACCTCTCTGCTCTGCTGCTGCCCTTTATTTTTCCTGG
CAGGTGCTCCCAAGGCCCACCGGAGGTAGCAGAGCGGGTGGGAGGGCTAT
TTGTTTTTTTGTTGTCTTCATAGCTGGACGACCTTGGATCATGACGCCAT
GGAAACCGTGTGGTGTGGGGTATAGGGTCTTTGAAGGGGCCAGCCAGCCA
CCCCCACGGGTTGGCTTCGGAACGATATCTGTTGGGCTGCGTCGTATCGT
TTTTGTGGCTGATTTACTTGGAGATGGCGTGGGCGGTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16417:176..2715-

>mRNA_L-elsbetiae_contig16417.4362.1 ID=mRNA_L-elsbetiae_contig16417.4362.1|Name=mRNA_L-elsbetiae_contig16417.4362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig16417:176..2715- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAACGAGGAAGAGGAGTACACACATGCGAACGAGGAAGAGGAGTAC
ACACGTGCTCCCAAGGCCCACCGGAGGTAGCAGAGCGGGTGGGAGGGCTA
TTTGTTTTTTTGTTGTCTTCATAGCTGGACGACCTTGGATCATGACGCCA
TGGAAACCGTGTGGTGTGGGGTATAGGGTCTTTGAAGGGGCCAGCCAGCC
ACCCCCACGGGTTGGCTTCGGAACGATATCTGTTGGGCTGCGTCGTATCG
TTTTTGTGGCTGATTTACTTGGAGATGGCGTGGGCGGTCCTGTGCTCCCA
AGGCCCACCGGAGGTAGCAGAGCGGGTGGGAGGGCTATTTGTTTTTTTGT
TGTCTTCATAGCTGGACGACCTTGGATCATGACGCCATGGAAACCGTGTG
GTGTGGGGTATAGGGTCTTTGAAGGGGCCAGCCAGCCACCCCCACGGGTT
GGCTTCGGAACGATATCTGTTGGGCTGCGTCGTATCGTTTTTGTGGCTGA
TTTACTTGGAGATGGCGTGGGCGGTCCT
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