mRNA_L-elsbetiae_contig16406.4357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16406.4357.1
Unique NamemRNA_L-elsbetiae_contig16406.4357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16406.4357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16406contigL-elsbetiae_contig16406:710..3500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_006190.1
Exons4
Model size1876
Cds size1512
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16406.4357.1prot_L-elsbetiae_contig16406.4357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16406 710..2733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.180184-CDS-L-elsbetiae_contig16406:709..7661622815678.180184-CDS-L-elsbetiae_contig16406:709..766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 710..766 +
1691683032.366868-CDS-L-elsbetiae_contig16406:709..7661691683032.366868-CDS-L-elsbetiae_contig16406:709..766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 710..766 +
1622815678.1947837-CDS-L-elsbetiae_contig16406:1038..24181622815678.1947837-CDS-L-elsbetiae_contig16406:1038..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 1039..2418 +
1691683032.3763568-CDS-L-elsbetiae_contig16406:1038..24181691683032.3763568-CDS-L-elsbetiae_contig16406:1038..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 1039..2418 +
1622815678.2089052-CDS-L-elsbetiae_contig16406:2658..27331622815678.2089052-CDS-L-elsbetiae_contig16406:2658..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 2659..2733 +
1691683032.3854997-CDS-L-elsbetiae_contig16406:2658..27331691683032.3854997-CDS-L-elsbetiae_contig16406:2658..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16406 2659..2733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.2200172-UTR-L-elsbetiae_contig16406:2733..28331622815678.2200172-UTR-L-elsbetiae_contig16406:2733..2833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16406 2734..2833 +
1691683032.3946366-UTR-L-elsbetiae_contig16406:2733..28331691683032.3946366-UTR-L-elsbetiae_contig16406:2733..2833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16406 2734..2833 +
1622815678.2331471-UTR-L-elsbetiae_contig16406:3236..35001622815678.2331471-UTR-L-elsbetiae_contig16406:3236..3500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16406 3237..3500 +
1691683032.4054594-UTR-L-elsbetiae_contig16406:3236..35001691683032.4054594-UTR-L-elsbetiae_contig16406:3236..3500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16406 3237..3500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16406.4357.1

>prot_L-elsbetiae_contig16406.4357.1 ID=prot_L-elsbetiae_contig16406.4357.1|Name=mRNA_L-elsbetiae_contig16406.4357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=504bp
MGSATLRTRLRHIKEQDIQVAQDSPPPPTFTVPAFRARKHRGGESDLLKD
TYPSGFCKPPKNRPLPTTTKTSSTASTRRKPLSSSGPQLRDLLFESKEIG
LLPCGAAAGRQALNVTRVVVGANDVVDTIGSELVQFAGFSIGPAELSSPT
SIINKSHHDPRPRTPSPVSPSRMTIDGSALLIMKRSSLLVEARSVANQWF
GLKSNAPGDFFASPRDESNAWKGRKRIRSATTDRAQSPGEPEPWPYSGRS
SRPSTSASTKRGPGGAVAVVLRVDVGGDIEQPCGLSMDGKEDSARPVHRD
NATKHGHAGTHDQSIQSPTATANEADPRGLLGAEENSCSTQEERQAGCRN
EMIEREKEREPALLSEDERNGRGRIDRASAKDCPSVVSEGDGSSSCFVAS
VSTSGNDTSGAGKRSFSTLDTERYRGNLSKDATKILRSHLESRNKPLSNT
TSCVSDAVATEDTGLISPAPPPTPSGQARHYGSAVLSSPRGPFARDVLRE
DKR*
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mRNA from alignment at L-elsbetiae_contig16406:710..3500+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16406.4357.1 ID=mRNA_L-elsbetiae_contig16406.4357.1|Name=mRNA_L-elsbetiae_contig16406.4357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2791bp|location=Sequence derived from alignment at L-elsbetiae_contig16406:710..3500+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAGTGCCACGCTGAGAACACGGCTTCGTCACATCAAGGAGCAAGA
TATACAGGTTAGTAGTAGTCTAGTGCAGTCAGACAGGAACAGCCCGTGCT
CCTGCAGGTTAGAAATTGCGCACGGGATCAAGTTACAACGGTGCCCCTTG
CTCTTCGTATTCCCGTACACTTGGCAGTCGTGTGCATCTGTTCCGACAGC
CAAAACCTTGTACAAGAGCTTGTCTGCGTACCGGTAGTCTGATGTTTCAG
CACATCAATGTACGTTTGTGTAAATGTAATGTATGCGCGCGGGCTTCGTT
TGCTGCCCCCGTCTGTTCCCTTTCCAAAGGTAGCGCAAGATTCTCCTCCA
CCACCAACATTCACCGTCCCTGCTTTCCGAGCTCGGAAGCACCGCGGAGG
AGAAAGCGACCTCCTCAAGGATACATATCCCTCAGGCTTTTGTAAGCCCC
CGAAGAATCGCCCCCTCCCCACGACCACCAAAACCTCATCAACGGCCTCA
ACAAGGAGAAAACCGCTGTCCTCGAGCGGTCCACAGCTTCGCGACCTGCT
ATTCGAGTCTAAGGAAATCGGACTTCTTCCGTGTGGAGCGGCCGCTGGCA
GGCAAGCCCTGAACGTAACCCGAGTAGTCGTCGGGGCGAACGATGTGGTC
GACACCATCGGCAGCGAGCTCGTGCAGTTCGCAGGGTTTTCTATCGGCCC
TGCGGAGCTCTCTTCTCCGACAAGCATCATCAATAAATCTCACCACGACC
CGAGACCTAGGACGCCGTCTCCCGTCTCACCCTCACGCATGACAATTGAC
GGCTCCGCCCTGCTCATCATGAAAAGGAGCAGCCTACTCGTTGAGGCGAG
GAGCGTAGCCAACCAATGGTTTGGGCTGAAAAGCAATGCCCCGGGCGACT
TCTTCGCAAGTCCCCGCGACGAAAGCAACGCATGGAAAGGGCGCAAGAGG
ATTCGATCGGCAACAACGGACAGGGCCCAGTCACCCGGTGAACCTGAGCC
ATGGCCTTATTCCGGGCGTTCTTCCAGGCCTAGCACATCGGCATCGACGA
AAAGAGGCCCTGGCGGTGCAGTAGCAGTTGTCCTGCGGGTGGATGTTGGG
GGGGATATTGAACAACCATGCGGCTTGTCTATGGACGGTAAAGAGGACTC
AGCGCGGCCAGTGCACCGGGACAACGCCACGAAACATGGCCATGCTGGTA
CCCATGACCAGAGCATCCAAAGCCCTACCGCCACGGCAAATGAAGCAGAC
CCACGTGGCCTCCTTGGGGCCGAAGAAAACTCATGTTCCACTCAAGAAGA
ACGGCAAGCGGGTTGCCGGAACGAGATGATCGAGAGAGAAAAAGAGCGCG
AGCCGGCGCTTTTGAGTGAAGACGAACGCAACGGCCGCGGGAGGATCGAT
AGGGCATCGGCAAAGGATTGCCCTTCCGTCGTGAGTGAGGGTGACGGCAG
CTCCTCGTGCTTCGTTGCGTCGGTCAGTACGAGTGGTAATGACACTTCGG
GGGCAGGAAAGCGGAGCTTCTCAACTCTTGATACGGAGCGGTACCGAGGG
AACCTGTCCAAGGATGCCACCAAAATCTTGAGGTCCCACCTCGAGTCGAG
AAACAAACCACTCAGCAATACCACCTCGTGTGTTTCCGACGCCGTGGCAA
CAGAGGATACGGGGCTCATATCACCAGCTCCTCCGCCGACTCCATCCGGG
CAGGCAAGAGTGGCAGAATTCAAACAAACTGTAATGCATATGTATAGCAA
ACAGCCTCATCCTTTGAGCCTCTCGCATGTACTCGTTATGCACAGCAGTA
CCGAAACTTCCTTACAACTCACGTTGACTTCGGCTTACCCTGAGTCACCG
GTGCTGCCGTTTCCCATTTCTTCCTCCGCATTGCACGACGGCATCCATCT
GCCAAACAAAGCAGCTTATGAACGACCTGCTCGTCGGACACCCACAAAGC
ACTATGGTTCCGCCGTTCTGTCTTCCCCCCGTGGGCCGTTCGCCCGAGAC
GTGCTACGTGAGGACAAGAGGTGACATCGTTCTAGCGGTGGTAAGGAAGA
AGGAGCTTCTCGAGTGCGACGACGATGCCGGCCTTCGGACACTCAAAACC
GCCGCTCGCCCTGTCCGCATCAAGGTAAATAAATACTGTAGTAGTAAGCT
CTAGGAGGGTCGCGCATCGGTCCGATCACACGCAATCCCGATAAATGGCC
TGCTGCACTGCTGCATGCCTCGGGTTATGTCCGGCATCGTTTCTTAGCTC
TTTGTCGTCTCTTATGTCGGGGTAGTGGTGTAGGGATATTCGAGCCGTAG
AAGAGCGGTTGCTTCATGGCCAAAAGATGTGTACCTGCTTCTCCGACGTT
GGCGAATTGATGCGCGCACGCTCACTCTTCGTCTGTAGCTTACATTCATC
CCTCGTTGGGGAGGTACATCACCCATGCGCACATCATTTCGCACGGTGGT
CGATACTCCTTCCATCCTTTCCGGTCTGCGCCGCAACCCCCCTGCCCGAA
CCATGGACCACGCAATCAACCTCTCAGGCGGACATGTCGATGGCGGAGGG
AATACGCGCTATTTTAGCGAGCGGAGTTCTTACGGACTATGGTGCAGGTA
TTGAGTGCGATAGATCAGCAGAAGGCGAAGGTGAAGGTGAAGGTGAAAGT
GAGGGTGGGCGAAGGGACCGTCGTTCGAGCCGAGATAGAGCCGTAGACAA
GCGCCGGGGTACGAGAGGCCGGCCGCGGGCATTGGAGTATTTTGACTCCC
AGCAAGGGGCGTGGCAGCTTGTTCGCAACGAAAGTGACTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16406:710..3500+

>mRNA_L-elsbetiae_contig16406.4357.1 ID=mRNA_L-elsbetiae_contig16406.4357.1|Name=mRNA_L-elsbetiae_contig16406.4357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3024bp|location=Sequence derived from alignment at L-elsbetiae_contig16406:710..3500+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAGTGCCACGCTGAGAACACGGCTTCGTCACATCAAGGAGCAAGA
TATACAGATGGGGAGTGCCACGCTGAGAACACGGCTTCGTCACATCAAGG
AGCAAGATATACAGGTAGCGCAAGATTCTCCTCCACCACCAACATTCACC
GTCCCTGCTTTCCGAGCTCGGAAGCACCGCGGAGGAGAAAGCGACCTCCT
CAAGGATACATATCCCTCAGGCTTTTGTAAGCCCCCGAAGAATCGCCCCC
TCCCCACGACCACCAAAACCTCATCAACGGCCTCAACAAGGAGAAAACCG
CTGTCCTCGAGCGGTCCACAGCTTCGCGACCTGCTATTCGAGTCTAAGGA
AATCGGACTTCTTCCGTGTGGAGCGGCCGCTGGCAGGCAAGCCCTGAACG
TAACCCGAGTAGTCGTCGGGGCGAACGATGTGGTCGACACCATCGGCAGC
GAGCTCGTGCAGTTCGCAGGGTTTTCTATCGGCCCTGCGGAGCTCTCTTC
TCCGACAAGCATCATCAATAAATCTCACCACGACCCGAGACCTAGGACGC
CGTCTCCCGTCTCACCCTCACGCATGACAATTGACGGCTCCGCCCTGCTC
ATCATGAAAAGGAGCAGCCTACTCGTTGAGGCGAGGAGCGTAGCCAACCA
ATGGTTTGGGCTGAAAAGCAATGCCCCGGGCGACTTCTTCGCAAGTCCCC
GCGACGAAAGCAACGCATGGAAAGGGCGCAAGAGGATTCGATCGGCAACA
ACGGACAGGGCCCAGTCACCCGGTGAACCTGAGCCATGGCCTTATTCCGG
GCGTTCTTCCAGGCCTAGCACATCGGCATCGACGAAAAGAGGCCCTGGCG
GTGCAGTAGCAGTTGTCCTGCGGGTGGATGTTGGGGGGGATATTGAACAA
CCATGCGGCTTGTCTATGGACGGTAAAGAGGACTCAGCGCGGCCAGTGCA
CCGGGACAACGCCACGAAACATGGCCATGCTGGTACCCATGACCAGAGCA
TCCAAAGCCCTACCGCCACGGCAAATGAAGCAGACCCACGTGGCCTCCTT
GGGGCCGAAGAAAACTCATGTTCCACTCAAGAAGAACGGCAAGCGGGTTG
CCGGAACGAGATGATCGAGAGAGAAAAAGAGCGCGAGCCGGCGCTTTTGA
GTGAAGACGAACGCAACGGCCGCGGGAGGATCGATAGGGCATCGGCAAAG
GATTGCCCTTCCGTCGTGAGTGAGGGTGACGGCAGCTCCTCGTGCTTCGT
TGCGTCGGTCAGTACGAGTGGTAATGACACTTCGGGGGCAGGAAAGCGGA
GCTTCTCAACTCTTGATACGGAGCGGTACCGAGGGAACCTGTCCAAGGAT
GCCACCAAAATCTTGAGGTCCCACCTCGAGTCGAGAAACAAACCACTCAG
CAATACCACCTCGTGTGTTTCCGACGCCGTGGCAACAGAGGATACGGGGC
TCATATCACCAGCTCCTCCGCCGACTCCATCCGGGCAGGCAAGAGTAGCG
CAAGATTCTCCTCCACCACCAACATTCACCGTCCCTGCTTTCCGAGCTCG
GAAGCACCGCGGAGGAGAAAGCGACCTCCTCAAGGATACATATCCCTCAG
GCTTTTGTAAGCCCCCGAAGAATCGCCCCCTCCCCACGACCACCAAAACC
TCATCAACGGCCTCAACAAGGAGAAAACCGCTGTCCTCGAGCGGTCCACA
GCTTCGCGACCTGCTATTCGAGTCTAAGGAAATCGGACTTCTTCCGTGTG
GAGCGGCCGCTGGCAGGCAAGCCCTGAACGTAACCCGAGTAGTCGTCGGG
GCGAACGATGTGGTCGACACCATCGGCAGCGAGCTCGTGCAGTTCGCAGG
GTTTTCTATCGGCCCTGCGGAGCTCTCTTCTCCGACAAGCATCATCAATA
AATCTCACCACGACCCGAGACCTAGGACGCCGTCTCCCGTCTCACCCTCA
CGCATGACAATTGACGGCTCCGCCCTGCTCATCATGAAAAGGAGCAGCCT
ACTCGTTGAGGCGAGGAGCGTAGCCAACCAATGGTTTGGGCTGAAAAGCA
ATGCCCCGGGCGACTTCTTCGCAAGTCCCCGCGACGAAAGCAACGCATGG
AAAGGGCGCAAGAGGATTCGATCGGCAACAACGGACAGGGCCCAGTCACC
CGGTGAACCTGAGCCATGGCCTTATTCCGGGCGTTCTTCCAGGCCTAGCA
CATCGGCATCGACGAAAAGAGGCCCTGGCGGTGCAGTAGCAGTTGTCCTG
CGGGTGGATGTTGGGGGGGATATTGAACAACCATGCGGCTTGTCTATGGA
CGGTAAAGAGGACTCAGCGCGGCCAGTGCACCGGGACAACGCCACGAAAC
ATGGCCATGCTGGTACCCATGACCAGAGCATCCAAAGCCCTACCGCCACG
GCAAATGAAGCAGACCCACGTGGCCTCCTTGGGGCCGAAGAAAACTCATG
TTCCACTCAAGAAGAACGGCAAGCGGGTTGCCGGAACGAGATGATCGAGA
GAGAAAAAGAGCGCGAGCCGGCGCTTTTGAGTGAAGACGAACGCAACGGC
CGCGGGAGGATCGATAGGGCATCGGCAAAGGATTGCCCTTCCGTCGTGAG
TGAGGGTGACGGCAGCTCCTCGTGCTTCGTTGCGTCGGTCAGTACGAGTG
GTAATGACACTTCGGGGGCAGGAAAGCGGAGCTTCTCAACTCTTGATACG
GAGCGGTACCGAGGGAACCTGTCCAAGGATGCCACCAAAATCTTGAGGTC
CCACCTCGAGTCGAGAAACAAACCACTCAGCAATACCACCTCGTGTGTTT
CCGACGCCGTGGCAACAGAGGATACGGGGCTCATATCACCAGCTCCTCCG
CCGACTCCATCCGGGCAGGCAAGACACTATGGTTCCGCCGTTCTGTCTTC
CCCCCGTGGGCCGTTCGCCCGAGACGTGCTACGTGAGGACAAGAGGTGAC
ACTATGGTTCCGCCGTTCTGTCTTCCCCCCGTGGGCCGTTCGCCCGAGAC
GTGCTACGTGAGGACAAGAGGTGA
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