mRNA_L-elsbetiae_contig16402.4355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16402.4355.1
Unique NamemRNA_L-elsbetiae_contig16402.4355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16402.4355.1 vs. uniprot
Match: D8LEQ7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.810e-37
Identity = 78/124 (62.90%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:  403 AVAPAAGNDFGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSSLSLEEVPYDRDLRWCNTASDSRPRPKMDPSGGVFGRVGTAITQDTGDYERLDRHYQELWKDRE---------PRGGSS 747
            A AP AGN FGG A                            V  SLSLEEVPYDRDLRWCNTASDSRPRPKMDP GGVFGRVGTAIT DTGDYERLDRHYQELWKDRE         PRGG+S
Sbjct:  151 APAPVAGNGFGGGAVRKVHPGMLESEFLAATEQANGGVEGGVV--SLSLEEVPYDRDLRWCNTASDSRPRPKMDPQGGVFGRVGTAITHDTGDYERLDRHYQELWKDREENGPPPAGGPRGGNS 272
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BLAST of mRNA_L-elsbetiae_contig16402.4355.1 vs. uniprot
Match: A0A6H5KDB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.720e-35
Identity = 77/122 (63.11%), Postives = 77/122 (63.11%), Query Frame = 1 
Query:  403 AVAPAAGNDFGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSSLSLEEVPYDRDLRWCNTASDSRPRPKMDPSGGVFGRVGTAITQDTGDYERLDRHYQELWKDREPRGGSSGRGRNGG 768
            A AP AGN FGG A                            V  SLSLEEVPYDRDLRWCNTASDSRPRPKMDP GGVFGRVGTAIT DTGDYERLDRHYQELWKDRE  G     G  GG
Sbjct:  154 APAPVAGNGFGGGAVRKVHPGMLESEFLAATEQANGGVEGGAV--SLSLEEVPYDRDLRWCNTASDSRPRPKMDPQGGVFGRVGTAITHDTGDYERLDRHYQELWKDREENGPPPASGPRGG 273
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BLAST of mRNA_L-elsbetiae_contig16402.4355.1 vs. uniprot
Match: A0A6V1NUB3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUB3_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 9.890e-7
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  541 LSLEEVPYDRDLRWCNTASDSRPRPKMDPSGGVFGRVGTAITQDTGDYERLDRHYQEL 714
            LSL+EVPYDRDL+WCN AS++RPR  +     +F +V         +Y +LD HY+ L
Sbjct:   39 LSLDEVPYDRDLKWCNQASNARPRRTVGKGHRMFQQVADITEGAVQEYGQLDSHYRAL 96
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BLAST of mRNA_L-elsbetiae_contig16402.4355.1 vs. uniprot
Match: A0A7S2RK49_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK49_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.870e-6
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:  541 LSLEEVPYDRDLRWCNTASDSRPRPKMDPSGGVFGRVGTAITQDTGDYERLDRHYQEL 714
            LSL++V YDRD+RW N  SD+RPR  +      F ++  +I  DT +Y  LD HY+ L
Sbjct:   73 LSLDQVSYDRDMRWFNKPSDARPRRTLGKGSRAFNQI-ESIANDTREYAALDDHYRRL 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16402.4355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEQ7_ECTSI2.810e-3762.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDB0_9PHAE5.720e-3563.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1NUB3_HETAK9.890e-746.55Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RK49_9STRA5.870e-644.83Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16402contigL-elsbetiae_contig16402:53..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_000760.1
Exons2
Model size917
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.0962262-CDS-L-elsbetiae_contig16402:52..6301622815678.0962262-CDS-L-elsbetiae_contig16402:52..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16402 53..630 +
1691683032.3316195-CDS-L-elsbetiae_contig16402:52..6301691683032.3316195-CDS-L-elsbetiae_contig16402:52..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16402 53..630 +
1622815678.110551-CDS-L-elsbetiae_contig16402:1409..17461622815678.110551-CDS-L-elsbetiae_contig16402:1409..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16402 1410..1746 +
1691683032.345296-CDS-L-elsbetiae_contig16402:1409..17461691683032.345296-CDS-L-elsbetiae_contig16402:1409..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16402 1410..1746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16402.4355.1prot_L-elsbetiae_contig16402.4355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16402 53..1746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16402.4355.1

>prot_L-elsbetiae_contig16402.4355.1 ID=prot_L-elsbetiae_contig16402.4355.1|Name=mRNA_L-elsbetiae_contig16402.4355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=305bp
QANSTGTAAHSSRRRRRGGSTAAPAAATATARQQQPTSLLQHTSGGRTTT
TTGGVSGGGAGGRGGGGGGGGGGGRGGGNRKIWEEHVAPAPAAAAAAATS
AGRGQASELPKGESGRRKGGGGGGGGAGAGVRRSAVAPAAGNDFGGAARG
AVHPGMLESEFLAATGQASGGAEGGAVLSSLSLEEVPYDRDLRWCNTASD
SRPRPKMDPSGGVFGRVGTAITQDTGDYERLDRHYQELWKDREPRGGSSG
RGRNGGRLRRVRGPGGGRNVDHLPAGFSTIAAATERAGRGAGAAGAAGVA
GRERW
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mRNA from alignment at L-elsbetiae_contig16402:53..1748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16402.4355.1 ID=mRNA_L-elsbetiae_contig16402.4355.1|Name=mRNA_L-elsbetiae_contig16402.4355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1696bp|location=Sequence derived from alignment at L-elsbetiae_contig16402:53..1748+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAAACAGCACCGGTACCGCCGCCCACTCCAGCAGACGCCGCCGAAG
GGGCGGATCTACGGCAGCACCGGCAGCGGCGACGGCAACAGCTCGTCAGC
AGCAACCGACCAGTCTTCTCCAGCACACCTCCGGAGGTAGGACGACAACG
ACGACCGGCGGCGTAAGCGGCGGGGGGGCGGGGGGGCGCGGCGGCGGCGG
TGGCGGCGGCGGCGGGGGTGGTCGCGGGGGAGGCAATCGTAAGATCTGGG
AAGAGCATGTGGCACCGGCACCGGCAGCAGCAGCAGCAGCAGCAACATCG
GCAGGCCGGGGTCAGGCTTCGGAGCTGCCCAAGGGCGAGAGTGGCCGGAG
AAAAGGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCTGGCGTTCGCCGGT
CGGCCGTGGCGCCTGCGGCGGGCAACGACTTCGGCGGCGCGGCCCGCGGG
GCCGTGCACCCCGGCATGCTCGAGAGCGAGTTTCTCGCGGCTACGGGGCA
GGCCAGCGGCGGTGCCGAGGGTGGGGCGGTGCTGTCGTCGTTGAGCCTCG
AGGAGGTCCCGTACGACAGGGATCTGAGGTGCGGTTGGTTTTTGCGCCTT
CTCTGTCGTGTGAAGCTTAAGCTTGTCCCTTTTATTTTGGCTCGACAGGA
GATAAAATTATGTAGGGTACGTTCATGCCTGTGGGGGTACAATGGGTCCT
GCCTCCGCCCCAGCACGCTGGTGCTTTGTCCACCCTGGGACTTGTTTGCG
CTGTAAATAGTAATCTTACGGAAAGGCCTTATGCATCCGTTTGTACGTTG
CACCCACGGCTGTGGCTTACACACGTGTTTTTTGAAGCAGTCGCCCATTT
TGCGACAGATTTACGTGGAATTTTCACGTTCATGTGGAGTTTTCACATTC
ATGTGGAATATAGCAAGATGGAAATTCCAAAAACTGGGTAGTTTGCGGCA
CGATGAAGGTGCTAACCACGGTGAATTTTTGAAAGCGGCCGGGGGCTTTG
TCGAGGGTAACCCTTTGCCTGTTTCTGTCGCCGGAGCGATGTTGTCGCCT
CTCCACATCCCGAAACGAAACGCAGAAAGTTGGAACCAGCGATACGATGA
AAGGAACAGAAAAAACAGGCCCGTTTCGTGCTGTAGTAGGTGATGAGTCT
CACGAACCCGACAACCGCTTTGGCTCTCATTGGGTTATCTACTCACCCTG
TTTCGCCCCTAGCTCACCTGCTGGCACAGCACCAGCACCACCAGCACCCC
AATTTTTTACCAAGATGTGACACCTGCTGAGCAGCAAAAGAAAAAAGAAA
GCCCCGTCTCTCTCCTGACGCCCTTCCCCGCGCAAACGGGATTCTCCCGC
GGCCTAGGTGGTGTAACACAGCTTCGGACTCCCGCCCCCGGCCAAAGATG
GACCCCTCCGGAGGCGTCTTCGGCAGGGTCGGAACGGCGATCACCCAGGA
CACCGGCGACTACGAGCGGCTCGACCGGCACTACCAGGAGCTGTGGAAGG
ACCGAGAGCCCCGGGGCGGCAGCAGCGGGAGGGGGCGCAACGGCGGCCGG
CTGCGGCGGGTGCGGGGGCCCGGCGGCGGACGAAACGTCGACCACCTCCC
CGCCGGGTTCTCGACCATCGCGGCGGCGACAGAGCGAGCCGGCAGAGGAG
CCGGCGCGGCGGGGGCCGCGGGGGTCGCAGGACGGGAACGTTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16402:53..1748+

>mRNA_L-elsbetiae_contig16402.4355.1 ID=mRNA_L-elsbetiae_contig16402.4355.1|Name=mRNA_L-elsbetiae_contig16402.4355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1830bp|location=Sequence derived from alignment at L-elsbetiae_contig16402:53..1748+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAAACAGCACCGGTACCGCCGCCCACTCCAGCAGACGCCGCCGAAG
GGGCGGATCTACGGCAGCACCGGCAGCGGCGACGGCAACAGCTCGTCAGC
AGCAACCGACCAGTCTTCTCCAGCACACCTCCGGAGGTAGGACGACAACG
ACGACCGGCGGCGTAAGCGGCGGGGGGGCGGGGGGGCGCGGCGGCGGCGG
TGGCGGCGGCGGCGGGGGTGGTCGCGGGGGAGGCAATCGTAAGATCTGGG
AAGAGCATGTGGCACCGGCACCGGCAGCAGCAGCAGCAGCAGCAACATCG
GCAGGCCGGGGTCAGGCTTCGGAGCTGCCCAAGGGCGAGAGTGGCCGGAG
AAAAGGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCTGGCGTTCGCCGGT
CGGCCGTGGCGCCTGCGGCGGGCAACGACTTCGGCGGCGCGGCCCGCGGG
GCCGTGCACCCCGGCATGCTCGAGAGCGAGTTTCTCGCGGCTACGGGGCA
GGCCAGCGGCGGTGCCGAGGGTGGGGCGGTGCTGTCGTCGTTGAGCCTCG
AGGAGGTCCCGTACGACAGGGATCTGAGCAGGCAAACAGCACCGGTACCG
CCGCCCACTCCAGCAGACGCCGCCGAAGGGGCGGATCTACGGCAGCACCG
GCAGCGGCGACGGCAACAGCTCGTCAGCAGCAACCGACCAGTCTTCTCCA
GCACACCTCCGGAGGTAGGACGACAACGACGACCGGCGGCGTAAGCGGCG
GGGGGGCGGGGGGGCGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGGTGGT
CGCGGGGGAGGCAATCGTAAGATCTGGGAAGAGCATGTGGCACCGGCACC
GGCAGCAGCAGCAGCAGCAGCAACATCGGCAGGCCGGGGTCAGGCTTCGG
AGCTGCCCAAGGGCGAGAGTGGCCGGAGAAAAGGCGGCGGCGGCGGCGGC
GGCGGTGCCGGTGCTGGCGTTCGCCGGTCGGCCGTGGCGCCTGCGGCGGG
CAACGACTTCGGCGGCGCGGCCCGCGGGGCCGTGCACCCCGGCATGCTCG
AGAGCGAGTTTCTCGCGGCTACGGGGCAGGCCAGCGGCGGTGCCGAGGGT
GGGGCGGTGCTGTCGTCGTTGAGCCTCGAGGAGGTCCCGTACGACAGGGA
TCTGAGGTGGTGTAACACAGCTTCGGACTCCCGCCCCCGGCCAAAGATGG
ACCCCTCCGGAGGCGTCTTCGGCAGGGTCGGAACGGCGATCACCCAGGAC
ACCGGCGACTACGAGCGGCTCGACCGGCACTACCAGGAGCTGTGGAAGGA
CCGAGAGCCCCGGGGCGGCAGCAGCGGGAGGGGGCGCAACGGCGGCCGGC
TGCGGCGGGTGCGGGGGCCCGGCGGCGGACGAAACGTCGACCACCTCCCC
GCCGGGTTCTCGACCATCGCGGCGGCGACAGAGCGAGCCGGCAGAGGAGC
CGGCGCGGCGGGGGCCGCGGGGGTCGCAGGACGGGAACGTTGGGTGGTGT
AACACAGCTTCGGACTCCCGCCCCCGGCCAAAGATGGACCCCTCCGGAGG
CGTCTTCGGCAGGGTCGGAACGGCGATCACCCAGGACACCGGCGACTACG
AGCGGCTCGACCGGCACTACCAGGAGCTGTGGAAGGACCGAGAGCCCCGG
GGCGGCAGCAGCGGGAGGGGGCGCAACGGCGGCCGGCTGCGGCGGGTGCG
GGGGCCCGGCGGCGGACGAAACGTCGACCACCTCCCCGCCGGGTTCTCGA
CCATCGCGGCGGCGACAGAGCGAGCCGGCAGAGGAGCCGGCGCGGCGGGG
GCCGCGGGGGTCGCAGGACGGGAACGTTGG
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