mRNA_L-elsbetiae_contig16396.4343.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16396.4343.1
Unique NamemRNA_L-elsbetiae_contig16396.4343.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16396.4343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16396contigL-elsbetiae_contig16396:286..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.7141163-CDS-L-elsbetiae_contig16396:285..5091622815676.7141163-CDS-L-elsbetiae_contig16396:285..509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16396 286..509 +
1691683031.346744-CDS-L-elsbetiae_contig16396:285..5091691683031.346744-CDS-L-elsbetiae_contig16396:285..509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16396 286..509 +
1622815676.724482-CDS-L-elsbetiae_contig16396:629..7081622815676.724482-CDS-L-elsbetiae_contig16396:629..708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16396 630..708 +
1691683031.3608916-CDS-L-elsbetiae_contig16396:629..7081691683031.3608916-CDS-L-elsbetiae_contig16396:629..708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16396 630..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16396.4343.1prot_L-elsbetiae_contig16396.4343.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16396 286..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16396.4343.1

>prot_L-elsbetiae_contig16396.4343.1 ID=prot_L-elsbetiae_contig16396.4343.1|Name=mRNA_L-elsbetiae_contig16396.4343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
LVLFLLVVSTTTAVSENRINTYSPCACMCNSSTKNRAGASKTSGAVHVAG
RRWRQISGYSKSVRVCVCVRRLPRSPPPPPGAVGGLLCFLFCRDDLEVCM
*
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mRNA from alignment at L-elsbetiae_contig16396:286..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16396.4343.1 ID=mRNA_L-elsbetiae_contig16396.4343.1|Name=mRNA_L-elsbetiae_contig16396.4343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig16396:286..708+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGTGTTGTTTCTGCTAGTTGTTTCAACTACCACTGCTGTTTCCGAAAA CCGAATAAATACGTATAGCCCATGTGCATGCATGTGTAATTCAAGCACCA AAAATCGAGCTGGCGCCTCAAAAACGTCGGGAGCTGTTCACGTGGCAGGC CGTCGCTGGCGGCAGATATCCGGATACTCAAAATCCGTGCGCGTGTGTGT GTGCGTACGCCGCTTGCCCCGGAGGCAAGGCCGGGGGGCTCCGTGAGGCG CGTATATAGACCTTCCGAGGGCGGAGCTGAAAAATACTTCTATGTACGCA TGACTCGGTGCTCACACCCGTCGTCGTTCGATCGCCTCACGGAGCCCCCC GCCGCCGCCGGGGGCGGTTGGTGGGTTGCTTTGTTTTTTGTTTTGCCGGG ATGACTTAGAAGTATGTATGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16396:286..708+

>mRNA_L-elsbetiae_contig16396.4343.1 ID=mRNA_L-elsbetiae_contig16396.4343.1|Name=mRNA_L-elsbetiae_contig16396.4343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig16396:286..708+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGTGTTGTTTCTGCTAGTTGTTTCAACTACCACTGCTGTTTCCGAAAA
CCGAATAAATACGTATAGCCCATGTGCATGCATGTGTAATTCAAGCACCA
AAAATCGAGCTGGCGCCTCAAAAACGTCGGGAGCTGTTCACGTGGCAGGC
CGTCGCTGGCGGCAGATATCCGGATACTCAAAATCCGTGCGCGTGTGTGT
GTGCGTACGCCGCTTGCCCCGGAGCTGGTGTTGTTTCTGCTAGTTGTTTC
AACTACCACTGCTGTTTCCGAAAACCGAATAAATACGTATAGCCCATGTG
CATGCATGTGTAATTCAAGCACCAAAAATCGAGCTGGCGCCTCAAAAACG
TCGGGAGCTGTTCACGTGGCAGGCCGTCGCTGGCGGCAGATATCCGGATA
CTCAAAATCCGTGCGCGTGTGTGTGTGCGTACGCCGCTTGCCCCGGAGCC
CCCCGCCGCCGCCGGGGGCGGTTGGTGGGTTGCTTTGTTTTTTGTTTTGC
CGGGATGACTTAGAAGTATGTATGTAGCCCCCCGCCGCCGCCGGGGGCGG
TTGGTGGGTTGCTTTGTTTTTTGTTTTGCCGGGATGACTTAGAAGTATGT
ATGTAG
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