mRNA_L-elsbetiae_contig16387.4340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16387.4340.1
Unique NamemRNA_L-elsbetiae_contig16387.4340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16387.4340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16387contigL-elsbetiae_contig16387:3241..3785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.5785522-CDS-L-elsbetiae_contig16387:3240..33901622815676.5785522-CDS-L-elsbetiae_contig16387:3240..3390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16387 3241..3390 -
1691683031.2976413-CDS-L-elsbetiae_contig16387:3240..33901691683031.2976413-CDS-L-elsbetiae_contig16387:3240..3390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16387 3241..3390 -
1622815676.5900881-CDS-L-elsbetiae_contig16387:3647..37851622815676.5900881-CDS-L-elsbetiae_contig16387:3647..3785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16387 3648..3785 -
1691683031.3082187-CDS-L-elsbetiae_contig16387:3647..37851691683031.3082187-CDS-L-elsbetiae_contig16387:3647..3785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16387 3648..3785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16387.4340.1prot_L-elsbetiae_contig16387.4340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16387 3241..3785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16387.4340.1

>prot_L-elsbetiae_contig16387.4340.1 ID=prot_L-elsbetiae_contig16387.4340.1|Name=mRNA_L-elsbetiae_contig16387.4340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
IQPTAVVIAVPSGQAASSPVGDGTGSGSEDETLTFDSKMDKLSSNMREEL
GGKCTTVFMYVIPWDKADGDKVFRGKTPTDAYSIPLESQQSRPSTP
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mRNA from alignment at L-elsbetiae_contig16387:3241..3785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16387.4340.1 ID=mRNA_L-elsbetiae_contig16387.4340.1|Name=mRNA_L-elsbetiae_contig16387.4340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=545bp|location=Sequence derived from alignment at L-elsbetiae_contig16387:3241..3785- (Laminarionema elsbetiae ELsaHSoW15)
ATTCAACCCACCGCTGTGGTCATAGCCGTACCAAGTGGACAAGCAGCATC
GTCACCTGTTGGCGACGGAACTGGATCCGGCTCAGAAGACGAAACTTTGA
CTTTCGATTCGAAGATGGACAAACTAAGTTCGAACATGGTGAGCCCTTTT
CCCGATGATGGGGGCGGTCCTGGTTTCATCCGTCCCTAATTTGTTATGTA
TGTTTGCGACCTGGTGGCCTTGATAAAGAGAAAATTGTCGGTACCTATGG
GCAACCTCATCAACCCGACCAACAACTGTAGCCTGACGAGTAGCGTCCAC
CGTAGATTAACTAGTGTCCCTTCGGCCTAAACCTAACGCAAATCTACAAC
TGGCTGGGGGTTCCCGACTTGTCGACGTTCTTGCGTGGTCCACAGAGGGA
GGAGCTGGGCGGAAAGTGCACTACCGTCTTCATGTACGTAATCCCGTGGG
ACAAAGCAGATGGCGACAAGGTATTTCGAGGGAAGACACCGACGGACGCG
TACAGCATTCCACTTGAGTCGCAGCAATCAAGACCTTCCACTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16387:3241..3785-

>mRNA_L-elsbetiae_contig16387.4340.1 ID=mRNA_L-elsbetiae_contig16387.4340.1|Name=mRNA_L-elsbetiae_contig16387.4340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig16387:3241..3785- (Laminarionema elsbetiae ELsaHSoW15)
ATTCAACCCACCGCTGTGGTCATAGCCGTACCAAGTGGACAAGCAGCATC
GTCACCTGTTGGCGACGGAACTGGATCCGGCTCAGAAGACGAAACTTTGA
CTTTCGATTCGAAGATGGACAAACTAAGTTCGAACATGATTCAACCCACC
GCTGTGGTCATAGCCGTACCAAGTGGACAAGCAGCATCGTCACCTGTTGG
CGACGGAACTGGATCCGGCTCAGAAGACGAAACTTTGACTTTCGATTCGA
AGATGGACAAACTAAGTTCGAACATGAGGGAGGAGCTGGGCGGAAAGTGC
ACTACCGTCTTCATGTACGTAATCCCGTGGGACAAAGCAGATGGCGACAA
GGTATTTCGAGGGAAGACACCGACGGACGCGTACAGCATTCCACTTGAGT
CGCAGCAATCAAGACCTTCCACTCCCAGGGAGGAGCTGGGCGGAAAGTGC
ACTACCGTCTTCATGTACGTAATCCCGTGGGACAAAGCAGATGGCGACAA
GGTATTTCGAGGGAAGACACCGACGGACGCGTACAGCATTCCACTTGAGT
CGCAGCAATCAAGACCTTCCACTCCC
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