mRNA_L-elsbetiae_contig16386.4339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16386.4339.1
Unique NamemRNA_L-elsbetiae_contig16386.4339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16386.4339.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.700e-17
Identity = 101/234 (43.16%), Postives = 112/234 (47.86%), Query Frame = -2 
Query:    2 DGSESTGSVSPSSDSEEGVGRNNR-SDSSVSTNGAMXXXXXXXXXXXEVDGVVEGFDSNGSSCXXXXXXXXXXXXXXXXXXXXXST---VAEGPNGYLAPTNNGHLKPDGLQTPRTPANGTSSTAAETTAVGNXXXXXXXXGSSGAAAAVAVVTGDIQPPSVGGLDLPPDRFRILQGVSRAFHSPAMALAASGTETAARKISLRDXXXXXXXXXXXXXXXXXXXXXXAYWGRHV 691
            DGSESTGSVSPS DSEEG   NN  SD++ ST+GAMXXXXXXXXXXX   G++ G        XXXX                 S         NG+ A  N G    +G   P       +  AA T A G                     TGD    S    DLP DRFRILQGVSRAFHSPAMA AA+GTE AAR++SLRD                      AYWGRHV
Sbjct: 1589 DGSESTGSVSPSIDSEEGERTNNAGSDTTSSTDGAMXXXXXXXXXXXXDAGLLSGXXXXXXXXXXXXACASPPSSSPRKFSGYKSLPXXXXXXXNGHSACDNGGATGANGHAIP-------NGAAAATAAAGICGGQN---------------TGDNAAASASLPDLPADRFRILQGVSRAFHSPAMAAAAAGTEAAARRVSLRDPDVPLASNVTGRLAREGELTDPAYWGRHV 1800
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BLAST of mRNA_L-elsbetiae_contig16386.4339.1 vs. uniprot
Match: A0A6H5KYS3_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-14
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = -2 
Query:    2 TGDIQPPSVGGLDLPPDRFRILQGVSRAFHSPAMALAASGTETAARKISLRDXXXXXXXXXXXXXXXXXXXXXXAYWGRHV 244
            TGD    S   LDLP DRFR+LQGVSRAFHSPAMA AA+GTE AAR++SLRD                      AYWGRHV
Sbjct: 1460 TGDNATASASFLDLPADRFRMLQGVSRAFHSPAMAAAAAGTEAAARRVSLRDPDVPLASNVTGRLAREGELTDPAYWGRHV 1540
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16386.4339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Q5_ECTSI1.700e-1743.16Type I fatty acid synthase, putative n=1 Tax=Ectoc... [more]
A0A6H5KYS3_9PHAE1.790e-1455.56Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16386contigL-elsbetiae_contig16386:1251..1960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.5283585-UTR-L-elsbetiae_contig16386:1250..14831622815676.5283585-UTR-L-elsbetiae_contig16386:1250..1483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16386 1251..1483 +
1691683031.2756321-UTR-L-elsbetiae_contig16386:1250..14831691683031.2756321-UTR-L-elsbetiae_contig16386:1250..1483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16386 1251..1483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.5411015-CDS-L-elsbetiae_contig16386:1483..19601622815676.5411015-CDS-L-elsbetiae_contig16386:1483..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16386 1484..1960 +
1691683031.286911-CDS-L-elsbetiae_contig16386:1483..19601691683031.286911-CDS-L-elsbetiae_contig16386:1483..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16386 1484..1960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16386.4339.1prot_L-elsbetiae_contig16386.4339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16386 1484..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16386.4339.1

>prot_L-elsbetiae_contig16386.4339.1 ID=prot_L-elsbetiae_contig16386.4339.1|Name=mRNA_L-elsbetiae_contig16386.4339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MSPVTTATAAAAPLLPLPTQFPTPLPTAVVSAAVDDVPLAGVRGVWRPSG
LRCPLFVGARYPLGPSATVEGERAPGVTPPLLPPPLLPPPPQELPLLSNP
STTPSTSDKGPSDSAPSDIAPFVLTLESDRLFLPTPSSESLLGETEPVDS
EPSPTGTRP
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mRNA from alignment at L-elsbetiae_contig16386:1251..1960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16386.4339.1 ID=mRNA_L-elsbetiae_contig16386.4339.1|Name=mRNA_L-elsbetiae_contig16386.4339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=710bp|location=Sequence derived from alignment at L-elsbetiae_contig16386:1251..1960+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGTGGCGGCCCCAGTAGGCCGGGTCCGTCAGCTCCCCTTTCTCCGCG
AGCCGCCCGGTGACGTTGCTCGCGAGCGGCACCGCGGGGTCGCGCAGGGA
GATCTTGCGGGCCGCCGTCTCGGTGCCCGAGGCCGCGAGCGCCATCGCCG
GCGAGTGGAAAGCGCGAGACACGCCCTGGAGGATTCGGAATCGGTCCGGG
GGGAGGTCGAGGCCGCCAACGCTCGGAGGTTGGATGTCGCCGGTGACCAC
CGCCACCGCCGCCGCTGCTCCGCTGCTGCCGTTGCCGACACAGTTTCCGA
CGCCGTTGCCGACCGCGGTTGTTTCAGCGGCGGTCGACGACGTGCCGTTG
GCAGGCGTCCGCGGCGTTTGGAGACCGTCAGGTTTGAGATGCCCGTTGTT
TGTGGGCGCAAGGTATCCGTTGGGGCCCTCGGCGACCGTTGAGGGCGAAA
GGGCGCCGGGTGTGACGCCGCCGTTGCTACCGCCGCCGTTGCTGCCGCCG
CCGCCGCAAGAACTACCGTTGCTGTCGAACCCCTCGACAACGCCGTCCAC
CTCCGACAAGGGCCCGTCGGACAGCGCGCCGTCGGACATCGCGCCGTTCG
TGCTGACACTCGAGTCGGACCGGTTGTTCCTCCCCACCCCCTCTTCGGAG
TCGCTACTGGGGGAGACCGAGCCCGTGGACTCCGAGCCGTCCCCCACGGG
CACGCGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16386:1251..1960+

>mRNA_L-elsbetiae_contig16386.4339.1 ID=mRNA_L-elsbetiae_contig16386.4339.1|Name=mRNA_L-elsbetiae_contig16386.4339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig16386:1251..1960+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCGGTGACCACCGCCACCGCCGCCGCTGCTCCGCTGCTGCCGTT
GCCGACACAGTTTCCGACGCCGTTGCCGACCGCGGTTGTTTCAGCGGCGG
TCGACGACGTGCCGTTGGCAGGCGTCCGCGGCGTTTGGAGACCGTCAGGT
TTGAGATGCCCGTTGTTTGTGGGCGCAAGGTATCCGTTGGGGCCCTCGGC
GACCGTTGAGGGCGAAAGGGCGCCGGGTGTGACGCCGCCGTTGCTACCGC
CGCCGTTGCTGCCGCCGCCGCCGCAAGAACTACCGTTGCTGTCGAACCCC
TCGACAACGCCGTCCACCTCCGACAAGGGCCCGTCGGACAGCGCGCCGTC
GGACATCGCGCCGTTCGTGCTGACACTCGAGTCGGACCGGTTGTTCCTCC
CCACCCCCTCTTCGGAGTCGCTACTGGGGGAGACCGAGCCCGTGGACTCC
GAGCCGTCCCCCACGGGCACGCGCCCCATGTCGCCGGTGACCACCGCCAC
CGCCGCCGCTGCTCCGCTGCTGCCGTTGCCGACACAGTTTCCGACGCCGT
TGCCGACCGCGGTTGTTTCAGCGGCGGTCGACGACGTGCCGTTGGCAGGC
GTCCGCGGCGTTTGGAGACCGTCAGGTTTGAGATGCCCGTTGTTTGTGGG
CGCAAGGTATCCGTTGGGGCCCTCGGCGACCGTTGAGGGCGAAAGGGCGC
CGGGTGTGACGCCGCCGTTGCTACCGCCGCCGTTGCTGCCGCCGCCGCCG
CAAGAACTACCGTTGCTGTCGAACCCCTCGACAACGCCGTCCACCTCCGA
CAAGGGCCCGTCGGACAGCGCGCCGTCGGACATCGCGCCGTTCGTGCTGA
CACTCGAGTCGGACCGGTTGTTCCTCCCCACCCCCTCTTCGGAGTCGCTA
CTGGGGGAGACCGAGCCCGTGGACTCCGAGCCGTCCCCCACGGGCACGCG
CCCC
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