mRNA_L-elsbetiae_contig16382.4338.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16382.4338.1
Unique NamemRNA_L-elsbetiae_contig16382.4338.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16382.4338.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.570e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV 168
            QVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV
Sbjct: 3024 QVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV 3079
[Close]
BLAST of mRNA_L-elsbetiae_contig16382.4338.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.630e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    4 VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV 168
            VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV
Sbjct: 1426 VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV 1480
[Close]
BLAST of mRNA_L-elsbetiae_contig16382.4338.1 vs. uniprot
Match: A0A836CNJ7_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 QVSRSQLLQHAEQVMSMYTPSKA---VLEFRFAGEKGLGAGVTASFYSAVAAELQRR 162
            QVSR  LL+HA+Q+M  YT   +   VLEFRF GE+GLGAGVTASFYSAVAA +  R
Sbjct:  206 QVSRDHLLEHAQQIMLAYTTPTSLASVLEFRFQGERGLGAGVTASFYSAVAAAMHAR 262
[Close]
BLAST of mRNA_L-elsbetiae_contig16382.4338.1 vs. uniprot
Match: A0A2D4BHU9_PYTIN (HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHU9_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 3.120e-7
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAEL 153
            V R ++L  AE VM M++  KA+L+  FAGEKG G+GVTASFYSA A  L
Sbjct: 1163 VHRDKILSSAEAVMKMHSKRKAILDVVFAGEKGYGSGVTASFYSATAQAL 1212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16382.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KW24_9PHAE7.570e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBS8_ECTSI2.630e-24100.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CNJ7_9STRA1.900e-1164.91HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2D4BHU9_PYTIN3.120e-758.00HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16382contigL-elsbetiae_contig16382:1369..1536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue4e-20
Seed eggNOG ortholog2880.D8LBS8
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0042176,GO:0042752,GO:0042753,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045732,GO:0048518,GO:0050789,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG5021@1,KOG4276@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.4818432-CDS-L-elsbetiae_contig16382:1368..15361622815676.4818432-CDS-L-elsbetiae_contig16382:1368..1536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16382 1369..1536 +
1691683031.247559-CDS-L-elsbetiae_contig16382:1368..15361691683031.247559-CDS-L-elsbetiae_contig16382:1368..1536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16382 1369..1536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16382.4338.1prot_L-elsbetiae_contig16382.4338.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16382 1369..1536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16382.4338.1

>prot_L-elsbetiae_contig16382.4338.1 ID=prot_L-elsbetiae_contig16382.4338.1|Name=mRNA_L-elsbetiae_contig16382.4338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
QVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAE
LQRRSV
back to top

mRNA from alignment at L-elsbetiae_contig16382:1369..1536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16382.4338.1 ID=mRNA_L-elsbetiae_contig16382.4338.1|Name=mRNA_L-elsbetiae_contig16382.4338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig16382:1369..1536+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTTCTCGGTCCCAGCTGCTCCAGCACGCGGAGCAGGTGATGTCCAT
GTACACGCCCTCCAAGGCCGTCCTGGAGTTCCGCTTCGCCGGCGAGAAGG
GGCTCGGCGCCGGCGTGACCGCCAGCTTCTACTCCGCCGTCGCCGCCGAG
CTTCAGCGGAGATCGGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16382:1369..1536+

>mRNA_L-elsbetiae_contig16382.4338.1 ID=mRNA_L-elsbetiae_contig16382.4338.1|Name=mRNA_L-elsbetiae_contig16382.4338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig16382:1369..1536+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTTCTCGGTCCCAGCTGCTCCAGCACGCGGAGCAGGTGATGTCCAT
GTACACGCCCTCCAAGGCCGTCCTGGAGTTCCGCTTCGCCGGCGAGAAGG
GGCTCGGCGCCGGCGTGACCGCCAGCTTCTACTCCGCCGTCGCCGCCGAG
CTTCAGCGGAGATCGGTCCAGGTTTCTCGGTCCCAGCTGCTCCAGCACGC
GGAGCAGGTGATGTCCATGTACACGCCCTCCAAGGCCGTCCTGGAGTTCC
GCTTCGCCGGCGAGAAGGGGCTCGGCGCCGGCGTGACCGCCAGCTTCTAC
TCCGCCGTCGCCGCCGAGCTTCAGCGGAGATCGGTC
back to top