mRNA_L-elsbetiae_contig16382.4337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16382.4337.1
Unique NamemRNA_L-elsbetiae_contig16382.4337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.580e-26
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            +++K   SVREALSD+LAVAAGFLPPWVDALLS FPFLLPLDLRLRYFRSLAFGVTRSVAYLQ
Sbjct: 2897 VNDKLADSVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 2959          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A7S2UWC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWC4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.410e-13
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            ++ +  +++   LSD  AVAAG LPPWVD LL  F F++P D+RL+YF   AFGV+RS+ +LQ
Sbjct:   76 VNVRLSEAILVLLSDTFAVAAGMLPPWVDKLLCRFHFVVPFDIRLQYFNCTAFGVSRSICWLQ 138          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A8J5XMZ3_DIALT (HECT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMZ3_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 4.240e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   37 LSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            L D+LAVAAG LPPW  AL  + PFL     RLR+FR+ AFG +R++A+ Q
Sbjct: 1614 LDDLLAVAAGALPPWCGALTRAAPFLFAERTRLRHFRATAFGTSRALAWAQ 1664          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A813ZU54_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZU54_9BILA)

HSP 1 Score: 52.8 bits (125), Expect = 2.030e-6
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            ISEK    + + L D L +A+  +P W   LL+S+ FL P + R  YF + AFGV+RS+ +LQ
Sbjct: 2082 ISEKINNKLVQQLQDPLVLASRSIPDWCKHLLNSYKFLFPFETRQLYFTTTAFGVSRSIVWLQ 2144          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A2H2IIB4_CAEJA (E3 ubiquitin-protein ligase n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IIB4_CAEJA)

HSP 1 Score: 52.0 bits (123), Expect = 3.670e-6
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            IS+K    V + LSD L VAA  LP W   L+  +P L  +D R  Y ++ AFGV+R++ +LQ
Sbjct:   12 ISDKLTMKVTQVLSDALVVAARALPGWCSRLVYKYPCLFTVDTRNMYLQATAFGVSRTIVWLQ 74          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A3P7JM46_STRVU (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7JM46_STRVU)

HSP 1 Score: 50.1 bits (118), Expect = 1.770e-5
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            IS+K  Q + + LSD L VAA  +P W + L+ ++P L   + +  Y ++ AFGV+R++ +LQ
Sbjct:  103 ISDKLTQKLTQELSDALVVAARAMPDWCERLIYTYPCLFSAETKNMYMQATAFGVSRTIVWLQ 165          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A016S4T3_9BILA (E3 ubiquitin-protein ligase n=5 Tax=Strongylida TaxID=6308 RepID=A0A016S4T3_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 1.800e-5
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            IS+K  Q + + LSD L VAA  +P W + L+ ++P L   + +  Y ++ AFGV+R++ +LQ
Sbjct:  252 ISDKLTQKLTQELSDALVVAARAMPDWCERLIYTYPCLFSAETKNMYMQATAFGVSRTIVWLQ 314          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: G0P4C2_CAEBE (E3 ubiquitin-protein ligase n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0P4C2_CAEBE)

HSP 1 Score: 50.1 bits (118), Expect = 1.810e-5
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            IS+K    + + LSD L VAA  LP W   L+  +P L  ++ R  Y ++ AFGV+R++ +LQ
Sbjct:  555 ISDKLTLKITQVLSDALVVAARALPEWCSRLIYKYPCLFSVETRNMYMQATAFGVSRTIVWLQ 617          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: A0A3M7PJ09_BRAPC (E3 ubiquitin-protein ligase n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PJ09_BRAPC)

HSP 1 Score: 50.1 bits (118), Expect = 1.820e-5
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            IS+K    + + L D L +A+  +P W    L+S+ FL P + R  YF + AFGV+RS+ +LQ
Sbjct: 1230 ISQKLNNKLVQQLQDPLVLASRSIPDWCKFTLNSYKFLFPFETRQLYFTTTAFGVSRSIVWLQ 1292          
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Match: F2UMM9_SALR5 (HECT-type E3 ubiquitin transferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMM9_SALR5)

HSP 1 Score: 50.1 bits (118), Expect = 1.820e-5
Identity = 22/63 (34.92%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ 189
            +S K    ++  ++D LA+ +G LP W + L  S P L P + R ++F + AFG++RS+ ++Q
Sbjct: 1549 VSRKLTSKLQRQMADPLALVSGALPSWCETLARSCPVLFPFEARKQFFSARAFGISRSIVWVQ 1611          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16382.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KW24_9PHAE4.580e-2687.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UWC4_9STRA2.410e-1350.79Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J5XMZ3_DIALT4.240e-754.90HECT domain-containing protein n=2 Tax=Diacronema ... [more]
A0A813ZU54_9BILA2.030e-642.86E3 ubiquitin-protein ligase n=1 Tax=Brachionus cal... [more]
A0A2H2IIB4_CAEJA3.670e-642.86E3 ubiquitin-protein ligase n=1 Tax=Caenorhabditis... [more]
A0A3P7JM46_STRVU1.770e-538.10E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Str... [more]
A0A016S4T3_9BILA1.800e-538.10E3 ubiquitin-protein ligase n=5 Tax=Strongylida Ta... [more]
G0P4C2_CAEBE1.810e-539.68E3 ubiquitin-protein ligase n=1 Tax=Caenorhabditis... [more]
A0A3M7PJ09_BRAPC1.820e-539.68E3 ubiquitin-protein ligase n=1 Tax=Brachionus pli... [more]
F2UMM9_SALR51.820e-534.92HECT-type E3 ubiquitin transferase n=1 Tax=Salping... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16382contigL-elsbetiae_contig16382:147..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.4425766-CDS-L-elsbetiae_contig16382:146..3351622815676.4425766-CDS-L-elsbetiae_contig16382:146..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16382 147..335 +
1691683031.2364278-CDS-L-elsbetiae_contig16382:146..3351691683031.2364278-CDS-L-elsbetiae_contig16382:146..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16382 147..335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16382.4337.1prot_L-elsbetiae_contig16382.4337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16382 147..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16382.4337.1

>prot_L-elsbetiae_contig16382.4337.1 ID=prot_L-elsbetiae_contig16382.4337.1|Name=mRNA_L-elsbetiae_contig16382.4337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
ISEKKKQSVREALSDVLAVAAGFLPPWVDALLSSFPFLLPLDLRLRYFRS
LAFGVTRSVAYLQ
back to top

mRNA from alignment at L-elsbetiae_contig16382:147..335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16382.4337.1 ID=mRNA_L-elsbetiae_contig16382.4337.1|Name=mRNA_L-elsbetiae_contig16382.4337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig16382:147..335+ (Laminarionema elsbetiae ELsaHSoW15)
ATATCGGAAAAAAAAAAACAGTCCGTCAGGGAGGCGCTGTCCGACGTCTT AGCGGTGGCTGCCGGGTTCCTGCCCCCCTGGGTAGACGCCCTTCTCTCCA GCTTCCCCTTCCTGCTCCCGCTGGACCTGCGCCTCCGGTACTTCCGATCC CTCGCGTTCGGCGTCACCCGCAGCGTCGCCTACCTCCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16382:147..335+

>mRNA_L-elsbetiae_contig16382.4337.1 ID=mRNA_L-elsbetiae_contig16382.4337.1|Name=mRNA_L-elsbetiae_contig16382.4337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig16382:147..335+ (Laminarionema elsbetiae ELsaHSoW15)
ATATCGGAAAAAAAAAAACAGTCCGTCAGGGAGGCGCTGTCCGACGTCTT
AGCGGTGGCTGCCGGGTTCCTGCCCCCCTGGGTAGACGCCCTTCTCTCCA
GCTTCCCCTTCCTGCTCCCGCTGGACCTGCGCCTCCGGTACTTCCGATCC
CTCGCGTTCGGCGTCACCCGCAGCGTCGCCTACCTCCAGATATCGGAAAA
AAAAAAACAGTCCGTCAGGGAGGCGCTGTCCGACGTCTTAGCGGTGGCTG
CCGGGTTCCTGCCCCCCTGGGTAGACGCCCTTCTCTCCAGCTTCCCCTTC
CTGCTCCCGCTGGACCTGCGCCTCCGGTACTTCCGATCCCTCGCGTTCGG
CGTCACCCGCAGCGTCGCCTACCTCCAG
back to top