mRNA_L-elsbetiae_contig1638.4336.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: A0A6H5JDE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.620e-15 Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 262 VQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEPV---HPEEVPVAQPARSGEAHL 486 V FN GTWTD EHQGFLRGLEV+G G+ +AIG FV +RSPLQIE +AQ H A VE V H V PAR G A L Sbjct: 10 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWHLAEVEAVRHLHQVGVQGTSPARRGWALL 87
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: D7G877_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G877_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.300e-14 Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 259 RVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEPVH 435 RV NSGTWTDEEH+GFLRGLEV+G G+W A+ FV +RSP QIE +AQ + A E H Sbjct: 2 RVPLNSGTWTDEEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKETAH 60
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: A0A6H5K163_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K163_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.650e-14 Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 Query: 262 VQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEPV 432 VQ N G WTDEEHQGFL GLEV+G G+W AI FV TRSP QIE +A+Q+FA E V Sbjct: 16 VQLNGGRWTDEEHQGFLSGLEVYGHGNWNAIAVFVPTRSPPQIEAYARQYFALGEAV 72
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: D7G878_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G878_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.750e-13 Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 250 EMTRVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEPV 432 ++ V FN GTWTD EHQGFLRGLEV+G G+ +AIG FV +RSPLQIE +AQ +FA E V Sbjct: 11 QIAMVPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWYFAEGEAV 71
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: D7G876_ECTSI (MYB DNA binding protein/ transcription factor-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G876_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 1.320e-12 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 277 GTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEP 429 G WTDEEHQGFL GLEV+G G+W+AI FV +RSP QIE +AQQ+ A V P Sbjct: 24 GRWTDEEHQGFLHGLEVYGYGNWDAIAVFVPSRSPPQIEAYAQQYVAQVRP 74
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: D7FPI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI5_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 4.680e-10 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 259 RVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVEPVHPEEV 447 R+ + WT++EH GFL GLEV+G G+W+AI FV +RS QIE +AQQ+ A E VH +V Sbjct: 5 RIPLTTEGWTEDEHNGFLHGLEVYGYGNWDAIAVFVPSRSSPQIEAYAQQYVAQGESVHSPQV 67
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: A0A7S2UVK9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK9_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.160e-7 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1 Query: 193 LSYKKETYRTHDSGSNKS*EMTRVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFAAVE 426 ++Y+ + HDS +N + + +SG WT EEH+ FLRGL++HG+G W+ I + TR+ +QI HAQ++F +E Sbjct: 29 VNYEPTLLQEHDSNTNIT--LEEASPSSGRWTAEEHEIFLRGLDLHGKG-WKEIAKMIKTRTVIQIRTHAQKYFQKLE 103
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: D2V1P6_NAEGR (SANT domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V1P6_NAEGR) HSP 1 Score: 64.7 bits (156), Expect = 4.550e-7 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 Query: 283 WTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHF 414 WT EEH FL+GLE+HG+GSW+ I V TRSP QI+ HAQ++F Sbjct: 364 WTKEEHILFLKGLELHGKGSWKEISAIVGTRSPTQIQSHAQKYF 407
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: A0A1B6P6D9_SORBI (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1B6P6D9_SORBI) HSP 1 Score: 62.4 bits (150), Expect = 1.290e-6 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 Query: 283 WTDEEHQGFLRGLEVHGRGSWEAIGG-FVSTRSPLQIEEHAQQHF 414 WT +EH+ FLRGLEVHGRGSW+ I FV TR+P QI HAQ++F Sbjct: 137 WTQDEHKNFLRGLEVHGRGSWKNISRYFVPTRTPNQICSHAQKYF 181
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Match: A0A7S3J4W0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J4W0_9SPIT) HSP 1 Score: 59.7 bits (143), Expect = 1.370e-6 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 187 EDLSYKKETYRTHDSGSNKS*EM-TRVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAQQHFA 417 ED + ++T S + K + T V FN+G WTDEEH F++G+E++G+ W+ + +V TRS Q HAQ+ FA Sbjct: 75 EDDHKVVKPFKTKQSKTRKETKSSTGVAFNTGRWTDEEHNRFMKGIELYGK-DWKKVQQYVGTRSSAQSRSHAQKVFA 151 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1638.4336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1638.4336.1 >prot_L-elsbetiae_contig1638.4336.1 ID=prot_L-elsbetiae_contig1638.4336.1|Name=mRNA_L-elsbetiae_contig1638.4336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp MTRVQFNSGTWTDEEHQGFLRGLEVHGRGSWEAIGGFVSTRSPLQIEEHAback to top mRNA from alignment at L-elsbetiae_contig1638:18628..23239+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1638.4336.1 ID=mRNA_L-elsbetiae_contig1638.4336.1|Name=mRNA_L-elsbetiae_contig1638.4336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4612bp|location=Sequence derived from alignment at L-elsbetiae_contig1638:18628..23239+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1638:18628..23239+ >mRNA_L-elsbetiae_contig1638.4336.1 ID=mRNA_L-elsbetiae_contig1638.4336.1|Name=mRNA_L-elsbetiae_contig1638.4336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig1638:18628..23239+ (Laminarionema elsbetiae ELsaHSoW15)back to top |