mRNA_L-elsbetiae_contig1636.4329.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1636.4329.1
Unique NamemRNA_L-elsbetiae_contig1636.4329.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1636.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1636contigL-elsbetiae_contig1636:24402..24856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size455
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1636.4329.1prot_L-elsbetiae_contig1636.4329.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1636 24465..24785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.324521-UTR-L-elsbetiae_contig1636:24401..244641622815675.324521-UTR-L-elsbetiae_contig1636:24401..24464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1636 24402..24464 +
1691683030.51997-UTR-L-elsbetiae_contig1636:24401..244641691683030.51997-UTR-L-elsbetiae_contig1636:24401..24464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1636 24402..24464 +
1622815675.3947353-UTR-L-elsbetiae_contig1636:24785..248561622815675.3947353-UTR-L-elsbetiae_contig1636:24785..24856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1636 24786..24856 +
1691683030.5424552-UTR-L-elsbetiae_contig1636:24785..248561691683030.5424552-UTR-L-elsbetiae_contig1636:24785..24856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1636 24786..24856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.3351326-CDS-L-elsbetiae_contig1636:24464..247851622815675.3351326-CDS-L-elsbetiae_contig1636:24464..24785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1636 24465..24785 +
1691683030.5317955-CDS-L-elsbetiae_contig1636:24464..247851691683030.5317955-CDS-L-elsbetiae_contig1636:24464..24785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1636 24465..24785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1636.4329.1

>prot_L-elsbetiae_contig1636.4329.1 ID=prot_L-elsbetiae_contig1636.4329.1|Name=mRNA_L-elsbetiae_contig1636.4329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRYRFRGVVAFAVPFLRGGLGFVTKGPSPRNTPAVCGQGTRRSTSEGEIR
EEMATTGDARHHPSALRNRDVISEELLKWVGHGQEHGEGAGAGRMLEIAS
GTGDVE*
back to top

mRNA from alignment at L-elsbetiae_contig1636:24402..24856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1636.4329.1 ID=mRNA_L-elsbetiae_contig1636.4329.1|Name=mRNA_L-elsbetiae_contig1636.4329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig1636:24402..24856+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGTCCACCCGCACCCCCACCACAGGAACAGCAAGGTCCTGATTGCCG
AAGACTACTGTTAATGAGATACAGATTTAGAGGAGTCGTCGCGTTTGCTG
TACCCTTCTTGAGAGGCGGTCTTGGTTTCGTGACGAAAGGTCCATCCCCT
AGAAATACACCTGCTGTCTGCGGGCAAGGCACCAGGCGTTCCACATCTGA
AGGGGAAATCCGTGAAGAAATGGCAACCACCGGAGACGCACGGCACCATC
CATCTGCCCTGCGTAATAGAGACGTTATATCTGAGGAGCTTTTGAAATGG
GTTGGACATGGACAGGAACATGGAGAAGGTGCTGGTGCCGGCCGGATGCT
TGAGATCGCCTCTGGGACAGGTGATGTTGAGTAGATCCGTGCAGAGTACG
CCCAGTTGGATGAACGTCGTAGAAGTAAGTCGCGGAAAAGCTCGATGTGC
GAGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1636:24402..24856+

>mRNA_L-elsbetiae_contig1636.4329.1 ID=mRNA_L-elsbetiae_contig1636.4329.1|Name=mRNA_L-elsbetiae_contig1636.4329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1636:24402..24856+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATACAGATTTAGAGGAGTCGTCGCGTTTGCTGTACCCTTCTTGAG
AGGCGGTCTTGGTTTCGTGACGAAAGGTCCATCCCCTAGAAATACACCTG
CTGTCTGCGGGCAAGGCACCAGGCGTTCCACATCTGAAGGGGAAATCCGT
GAAGAAATGGCAACCACCGGAGACGCACGGCACCATCCATCTGCCCTGCG
TAATAGAGACGTTATATCTGAGGAGCTTTTGAAATGGGTTGGACATGGAC
AGGAACATGGAGAAGGTGCTGGTGCCGGCCGGATGCTTGAGATCGCCTCT
GGGACAGGTGATGTTGAGTAGATGAGATACAGATTTAGAGGAGTCGTCGC
GTTTGCTGTACCCTTCTTGAGAGGCGGTCTTGGTTTCGTGACGAAAGGTC
CATCCCCTAGAAATACACCTGCTGTCTGCGGGCAAGGCACCAGGCGTTCC
ACATCTGAAGGGGAAATCCGTGAAGAAATGGCAACCACCGGAGACGCACG
GCACCATCCATCTGCCCTGCGTAATAGAGACGTTATATCTGAGGAGCTTT
TGAAATGGGTTGGACATGGACAGGAACATGGAGAAGGTGCTGGTGCCGGC
CGGATGCTTGAGATCGCCTCTGGGACAGGTGATGTTGAGTAG
back to top