mRNA_L-elsbetiae_contig16359.4326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16359.4326.1
Unique NamemRNA_L-elsbetiae_contig16359.4326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16359.4326.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.170e-20
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 VAFRGQENVGCLEIWEQICDVQGRFGNEYGGGRGRSGGEALVPLPDPKMDSLAAVRKSLR 180
            +A   QENVGCLEIW+QICDVQGRFGNEYG  R R GGE  VPLPDPKMD+L A+ + LR
Sbjct:  184 LALSFQENVGCLEIWDQICDVQGRFGNEYG--RPRGGGEVAVPLPDPKMDTLGAILELLR 241
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BLAST of mRNA_L-elsbetiae_contig16359.4326.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-19
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VAFRGQENVGCLEIWEQICDVQGRFGNEYGGGRGRSGGEALVPLPDPKMDSLAA 162
            +A   QENVGCLEIW+QICDVQGRFGNEYG  R R GGE  VPLPDPKMD+L A
Sbjct:   97 LALSFQENVGCLEIWDQICDVQGRFGNEYG--RPRGGGEVAVPLPDPKMDTLGA 148
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BLAST of mRNA_L-elsbetiae_contig16359.4326.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 1.970e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 VAFRGQENVGCLEIWEQICDVQGRFGNEYGGGRGRSGGEALVPLPDPKMDSLAAVRKSL 177
            +A   QEN GCLEIW ++CDVQG++ +E+         E+   LP+ KMDSL+ + ++L
Sbjct:   85 LALSFQENAGCLEIWNKVCDVQGKY-SEF------RPDESKYSLPECKMDSLSEIGEAL 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16359.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKJ6_9PHAE1.170e-2071.67SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FI53_ECTSI2.600e-1975.93SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK1.970e-642.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16359contigL-elsbetiae_contig16359:804..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FI53
Preferred nameSMEK2
KEGG koko:K17491
KEGG Pathwayko04212,ko04922,map04212,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
EggNOG free text desc.signal transduction involved in meiotic cell cycle checkpoint
EggNOG OGsKOG2175@1,KOG2175@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.282876-CDS-L-elsbetiae_contig16359:803..9921622815675.282876-CDS-L-elsbetiae_contig16359:803..992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16359 804..992 -
1691683030.5065637-CDS-L-elsbetiae_contig16359:803..9921691683030.5065637-CDS-L-elsbetiae_contig16359:803..992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16359 804..992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16359.4326.1prot_L-elsbetiae_contig16359.4326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16359 804..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16359.4326.1

>prot_L-elsbetiae_contig16359.4326.1 ID=prot_L-elsbetiae_contig16359.4326.1|Name=mRNA_L-elsbetiae_contig16359.4326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
VAFRGQENVGCLEIWEQICDVQGRFGNEYGGGRGRSGGEALVPLPDPKMD
SLAAVRKSLRQQ*
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mRNA from alignment at L-elsbetiae_contig16359:804..992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16359.4326.1 ID=mRNA_L-elsbetiae_contig16359.4326.1|Name=mRNA_L-elsbetiae_contig16359.4326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig16359:804..992- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGTTTCGCGGACAGGAAAACGTGGGGTGCCTGGAAATCTGGGAGCA
GATCTGCGACGTGCAGGGGCGGTTTGGGAACGAGTACGGGGGGGGCCGCG
GGAGGAGTGGCGGGGAGGCTTTGGTTCCGTTGCCGGACCCCAAGATGGAC
TCGCTTGCGGCGGTGAGGAAAAGCTTAAGGCAGCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16359:804..992-

>mRNA_L-elsbetiae_contig16359.4326.1 ID=mRNA_L-elsbetiae_contig16359.4326.1|Name=mRNA_L-elsbetiae_contig16359.4326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig16359:804..992- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGTTTCGCGGACAGGAAAACGTGGGGTGCCTGGAAATCTGGGAGCA
GATCTGCGACGTGCAGGGGCGGTTTGGGAACGAGTACGGGGGGGGCCGCG
GGAGGAGTGGCGGGGAGGCTTTGGTTCCGTTGCCGGACCCCAAGATGGAC
TCGCTTGCGGCGGTGAGGAAAAGCTTAAGGCAGCAGTAGGTCGCGTTTCG
CGGACAGGAAAACGTGGGGTGCCTGGAAATCTGGGAGCAGATCTGCGACG
TGCAGGGGCGGTTTGGGAACGAGTACGGGGGGGGCCGCGGGAGGAGTGGC
GGGGAGGCTTTGGTTCCGTTGCCGGACCCCAAGATGGACTCGCTTGCGGC
GGTGAGGAAAAGCTTAAGGCAGCAGTAG
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