mRNA_L-elsbetiae_contig1635.4322.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1635.4322.1
Unique NamemRNA_L-elsbetiae_contig1635.4322.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1635.4322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1635contigL-elsbetiae_contig1635:5841..6444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.88347-UTR-L-elsbetiae_contig1635:5840..60541622815674.88347-UTR-L-elsbetiae_contig1635:5840..6054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1635 5841..6054 +
1691683030.273736-UTR-L-elsbetiae_contig1635:5840..60541691683030.273736-UTR-L-elsbetiae_contig1635:5840..6054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1635 5841..6054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.8971608-CDS-L-elsbetiae_contig1635:6054..64441622815674.8971608-CDS-L-elsbetiae_contig1635:6054..6444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 6055..6444 +
1691683030.2837858-CDS-L-elsbetiae_contig1635:6054..64441691683030.2837858-CDS-L-elsbetiae_contig1635:6054..6444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1635 6055..6444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1635.4322.1prot_L-elsbetiae_contig1635.4322.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1635 6055..6444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1635.4322.1

>prot_L-elsbetiae_contig1635.4322.1 ID=prot_L-elsbetiae_contig1635.4322.1|Name=mRNA_L-elsbetiae_contig1635.4322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MPCGTIYSTELILILRGRTYDGSGALREGCRRGELHIAINSHTWTKKIPT
TPSTNNTCHQQKSSPSPSAHWSCVNHVQISVETRNQEVLVARTTGPTSPY
SKLHHERSSKPPQGISSPLILQLYSVSNRK
back to top

mRNA from alignment at L-elsbetiae_contig1635:5841..6444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1635.4322.1 ID=mRNA_L-elsbetiae_contig1635.4322.1|Name=mRNA_L-elsbetiae_contig1635.4322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=604bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:5841..6444+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGGCGTGAGAATCATGGACTACCTTCGCCACGCAGGTTCCCCGATA
TTGCTTTCAGACCAAACCGGGTCGTTCGTGGAATCGTTTTTCTCAGGGCG
GACCTTTACATCGTTGTCTATTTTGTAACATCTAAGCAGCCACAAGATCT
AGGGAACGCTGCACATGAAAATACCGGCCTTGAACAGCTAGCCGAGAGAC
GAAGCATTTGACGCATGCCATGCGGTACGATTTACTCCACAGAGTTAATT
TTGATTTTAAGGGGCAGAACCTACGATGGCAGCGGTGCGCTCCGGGAGGG
GTGCAGGAGAGGGGAACTTCACATCGCGATAAATTCACACACATGGACAA
AAAAGATCCCCACGACACCTTCCACGAACAATACATGCCATCAACAAAAA
AGCTCTCCCTCTCCCTCGGCGCATTGGAGCTGCGTCAACCATGTACAAAT
CTCTGTAGAAACTCGTAACCAAGAGGTCTTAGTTGCACGCACAACCGGCC
CAACTTCACCGTACAGCAAGCTACATCACGAGAGGAGTTCAAAGCCACCA
CAAGGCATATCATCTCCGCTAATATTACAACTCTACAGTGTGTCCAACAG
AAAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1635:5841..6444+

>mRNA_L-elsbetiae_contig1635.4322.1 ID=mRNA_L-elsbetiae_contig1635.4322.1|Name=mRNA_L-elsbetiae_contig1635.4322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:5841..6444+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATGCGGTACGATTTACTCCACAGAGTTAATTTTGATTTTAAGGGG
CAGAACCTACGATGGCAGCGGTGCGCTCCGGGAGGGGTGCAGGAGAGGGG
AACTTCACATCGCGATAAATTCACACACATGGACAAAAAAGATCCCCACG
ACACCTTCCACGAACAATACATGCCATCAACAAAAAAGCTCTCCCTCTCC
CTCGGCGCATTGGAGCTGCGTCAACCATGTACAAATCTCTGTAGAAACTC
GTAACCAAGAGGTCTTAGTTGCACGCACAACCGGCCCAACTTCACCGTAC
AGCAAGCTACATCACGAGAGGAGTTCAAAGCCACCACAAGGCATATCATC
TCCGCTAATATTACAACTCTACAGTGTGTCCAACAGAAAAATGCCATGCG
GTACGATTTACTCCACAGAGTTAATTTTGATTTTAAGGGGCAGAACCTAC
GATGGCAGCGGTGCGCTCCGGGAGGGGTGCAGGAGAGGGGAACTTCACAT
CGCGATAAATTCACACACATGGACAAAAAAGATCCCCACGACACCTTCCA
CGAACAATACATGCCATCAACAAAAAAGCTCTCCCTCTCCCTCGGCGCAT
TGGAGCTGCGTCAACCATGTACAAATCTCTGTAGAAACTCGTAACCAAGA
GGTCTTAGTTGCACGCACAACCGGCCCAACTTCACCGTACAGCAAGCTAC
ATCACGAGAGGAGTTCAAAGCCACCACAAGGCATATCATCTCCGCTAATA
TTACAACTCTACAGTGTGTCCAACAGAAAA
back to top