mRNA_L-elsbetiae_contig1634.4317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1634.4317.1
Unique NamemRNA_L-elsbetiae_contig1634.4317.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1634.4317.1 vs. uniprot
Match: D8LF57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF57_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 4.960e-58
Identity = 104/161 (64.60%), Postives = 119/161 (73.91%), Query Frame = 2 
Query:  113 GYIALCCMVGAGAFIVPIPPPLQAYSPRSPRFNSRS--AV--GGESD----EVSVFDAGEAAVSWDDYKKQKPNEYKLDEVDEMQCWKTDECPVEDASKFTKAWQVHSAERNPTTETHFDSEGEWEEETK--WSKKWHEDVGEDDLHEEIASPPAKDGFGI 565
            G + L       AF    P P   +  R+ R  + +  AV  GG+ D    E+SVFDAGE AVSW+DYKKQKP+E+KLD VDEMQCWKTDECPVED  KFTKAW++HSAERNPT ETHFDSEGEWEEE+K  WSKKWHEDVGEDDLHE+  SP AKDG+GI
Sbjct:   13 GVVLLVLAASGEAFFTAAPAPA-VFKSRAYRITTTNVNAVRHGGQQDQQDPELSVFDAGETAVSWEDYKKQKPDEFKLDAVDEMQCWKTDECPVEDEKKFTKAWEIHSAERNPTMETHFDSEGEWEEESKGAWSKKWHEDVGEDDLHEDTVSPAAKDGYGI 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1634.4317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF57_ECTSI4.960e-5864.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1634contigL-elsbetiae_contig1634:10768..15094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001770.1
Exons4
Model size1487
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1634.4317.1prot_L-elsbetiae_contig1634.4317.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1634 11687..14994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.6380568-UTR-L-elsbetiae_contig1634:10767..116861622815674.6380568-UTR-L-elsbetiae_contig1634:10767..11686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1634 10768..11686 -
1691683030.1467083-UTR-L-elsbetiae_contig1634:10767..116861691683030.1467083-UTR-L-elsbetiae_contig1634:10767..11686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1634 10768..11686 -
1622815674.7033174-UTR-L-elsbetiae_contig1634:14994..150941622815674.7033174-UTR-L-elsbetiae_contig1634:14994..15094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1634 14995..15094 -
1691683030.192801-UTR-L-elsbetiae_contig1634:14994..150941691683030.192801-UTR-L-elsbetiae_contig1634:14994..15094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1634 14995..15094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.650974-CDS-L-elsbetiae_contig1634:11686..117741622815674.650974-CDS-L-elsbetiae_contig1634:11686..11774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 11687..11774 -
1691683030.1562824-CDS-L-elsbetiae_contig1634:11686..117741691683030.1562824-CDS-L-elsbetiae_contig1634:11686..11774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 11687..11774 -
1622815674.6654131-CDS-L-elsbetiae_contig1634:12658..126841622815674.6654131-CDS-L-elsbetiae_contig1634:12658..12684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 12659..12684 -
1691683030.1665547-CDS-L-elsbetiae_contig1634:12658..126841691683030.1665547-CDS-L-elsbetiae_contig1634:12658..12684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 12659..12684 -
1622815674.6807587-CDS-L-elsbetiae_contig1634:13293..134281622815674.6807587-CDS-L-elsbetiae_contig1634:13293..13428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 13294..13428 -
1691683030.176627-CDS-L-elsbetiae_contig1634:13293..134281691683030.176627-CDS-L-elsbetiae_contig1634:13293..13428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 13294..13428 -
1622815674.693432-CDS-L-elsbetiae_contig1634:14775..149941622815674.693432-CDS-L-elsbetiae_contig1634:14775..14994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 14776..14994 -
1691683030.1846569-CDS-L-elsbetiae_contig1634:14775..149941691683030.1846569-CDS-L-elsbetiae_contig1634:14775..14994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1634 14776..14994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1634.4317.1

>prot_L-elsbetiae_contig1634.4317.1 ID=prot_L-elsbetiae_contig1634.4317.1|Name=mRNA_L-elsbetiae_contig1634.4317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MKKTGYIALCCMVGAGAFIVPIPPPLQAYSPRSPRFNSRSAVGGESDEVS
VFDAGEAAVSWDDYKKQKPNEYKLDEVDEMQCWKTDECPVEDASKFTKAW
QVHSAERNPTTETHFDSEGEWEEETKWSKKWHEDVGEDDLHEEIASPPAK
DGFGI*
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mRNA from alignment at L-elsbetiae_contig1634:10768..15094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1634.4317.1 ID=mRNA_L-elsbetiae_contig1634.4317.1|Name=mRNA_L-elsbetiae_contig1634.4317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4327bp|location=Sequence derived from alignment at L-elsbetiae_contig1634:10768..15094- (Laminarionema elsbetiae ELsaHSoW15)
CGACACGTCAAGAAAACCCGCCCATCATCCATCACCCTACAAGTATCCTC
CCTCTCGATCCCTTTTCTGTCTCCACTCGCCGCCTTAACGCTAAAAAGCG
ATGAAGAAAACCGGTTACATTGCTCTCTGCTGCATGGTAGGGGCGGGGGC
TTTCATCGTTCCTATTCCCCCGCCGCTTCAGGCCTACTCGCCGCGATCGC
CTCGCTTCAACTCCCGATCCGCCGTCGGAGGGGAATCCGATGAAGTGAGC
GTGTTCGACGCGGGCGAGGCTGCTGTATCATGGGACGACTACAAGAAGCA
GAAACCGAATGAATACAAGGTGTGTGTGATGTTGGCGTTAGCGTTTTGCT
GAGGATGCTCTGATTGCGCGCAAATAGAGCCAGCTGTTTCTTTGGGAGGA
TCCGTGTGTCCCGTTGTTGGTGAACTTCAAAGTGGGACGATTTGTACGAG
ACCTTTACCCTACCGTTAGCGTTGTTCCATGGTAATCAAGGTGAAGAAGA
GGGGTGTTTTCGGTCTGATGCGCTGAAGCTCTAGATGTGTTTCCCCCAAG
ATTTTCCTCGGTGGCAAGGTAGTCTAATGAGGTTGCACGTACACAGAGCT
AGATATCTAGATACAGAACCAGGATCTAGTCTAGGACCTATCTAGCCTAT
TTGCCCAGGGCAGATAGACTTTGTTGGCACATCTTTGTACATCTTGCACG
TACAGCCAGCAGCCTTGTCTACCACGGCCTCCAGAGCAACCTCACGGAAG
CGACGTAACCCGGCGCTGCACGATTTTCGCGGGGAACAGAATATGTATGT
GTAGACTAGAGACTATATCTAGACTAGACTATGTGTATTTAGATACATGT
ACATTCCAATCCGGCAACTCGCTGCCGCGCCCAGCCCACAGACGTCGTGC
GAGGATCTCTAACAACAGACCGCGGGGGGGCTGACGGGGTGGGGAGGAAG
TGCTTGGGGTGGCTAGATCCATGTATTGTTGTAGTCGACGGCATTACCCC
GCCTTCGCATGCAACGCCGTGCACGCATATGTAAACATTGCAGCATGAAG
AAATCCACGCCCTCTGGCAATCTTTCTTCGGAGCGTGTGTTTTTTTACAG
ACGTACGTATGTATGTGTGCTGCGTGTTTCGTTCAGCAGAGGTCGGCTGA
TTGATAAAAAGGGGCTCGCCGTGTACTGCCGGGAAAGGGCCCGCCCGGTG
TAATACCACCGGCGCCGGCAGTATATCGGGCTCCAGGCGAGCCAGAGGCG
ATTTCACGATTTCACCGGCACAACATACCGAAAAGATACGACTGACGTAG
TGGTGGGTGGGAGTGTCTCATAGAAACGGGTTATTTTATATAAGGTGCTA
GCCGCTTACCGCCGCCGTGGTCTGCATAAATAGGCACCACACAACCTGCA
CGTGAAAATATCCGCAAAACACACGCACAACAAAGAATCAAAGATGGAAT
CTAACCCATACAAGAGCAAAGACTCGATATGGGGTTCAAACGGTATTCCA
TACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAACACGTTCTTCTCT
CACATGATGTGCGACGTGAAATACATGCCAAAGTTAATATGAGTTGTGAT
GTGCCACGTACGTATCTATGCCGCTCGTCTGTTGCAAAACTGCTACATAT
TTATTATTTATTTCAGCTGGACGAGGTGGACGAAATGCAGTGCTGGAAGA
CGGACGAGTGCCCCGTGGAGGACGCTTCGAAGTTCACCAAAGCCTGGCAA
GTTCACAGCGCCGAGAGGAATCCCACCACGGAGACGCACTTTGACAGCGA
GGTGAGTAGGTTCATGGGTGGGTATTTAGGTGGGTATTGCCGTGTTCTTA
TTTTTGCCGCATTCGGCGTGGTTATAGTTTTCTAGTATGTACACCAGCAG
TACACGTAGTGCAACGTTCAGGGGGTGAGGCGGCTGTCGCGAGAGGGCGC
TATAGAAAGTCGCAAGGGGGTGGTATGATGTGCAATTACATGTTTTACCA
TTTATTTCAGGTAGTTTTGTTGAGAAAGAAGATCGACTCCAGCCCAGTGC
TCAGGGATGCCTATAGATGCTAAACTGCTACTGTTGTAGACGGAGTGCCA
TCCGAGAGGAACGTAGCTAACGCGCACCACAGGATCGACCTCGACAGCGC
TGAGAACGCCCGTATGCCCCACCCCTCGCGTTTTGCGCGGCGTAGTAGTA
GCTAATATTACTACCCCTTTTCCCCTATCATAAAGGCATGCCGTGACGTC
CGAGTGCACATTTTTGCCCGCCGCTTGCACGTTGTTCGACGTTATTCTGT
GTGCGCGAACAACCACGGTGGTGCTATTGCTCTTCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTTCCGGCTCCTGCGCTGGCCGCGCACACGG
GAATGCTTAGGGGGAGTGGGAGGAAGAAACCAAGTGGTGAGATGCGTTAG
TTTAGCCGGGCGTACCTTCCCTTCCCCCCTTCGAGTTCGGGCCAGGGCTA
GTAGAGTAAGGGTGTGGATCTCATAGCACGATCTACGATCTAAGCCCCGG
TGAGGTATACTTACTCTAGAAATACCTGTTTTTCATGCCATGCGCCGATG
ATCCGCTTCTATCGGGTGATGGGTCGACCAACCAAAGAACTTCATGGTAC
ATATTTACAAGCATTACAAAGAGGTGTCTCATTTGCGTGTAGGTTCGGTA
ATTTCCAAGCACCTGGTAAACCTACTGGCAGCACTCTGATGTACAGCAAC
AGTATACCCTTGTTTAGGGTAAGTTAGCCTGTGACCACAAGAATCGACCG
CGTCGAGTGTTTGACTAGTACGGACGTGCGTAGGTACTGGATGGAGAGAT
CGGAACGGTTTTTAATGTGAAGAAAGCAACAACAACAACAACAACAACAA
CAACGAGGCTTCAAGGCTTTCGAAGTAGGTGAACCATGAAGCACTACTTT
ATAGGAGTATTGCTCTTCGCTCTATAGATATGTAGATAAGATATGTGTGC
CTTACCTGATATTGTACAGCGTCGACTCTGAGAAACAGGCAGTGCAGCCA
TGGCAAGCCAGAAACGGTCAAGAAGGGCATCCTGTCGTACACAGCCCAAA
ACGACGACAGACAGCTGTTGATGCATTTGATATATATACTTCACACTACT
ACTGTCACTACTGTCACTACTTACACCAGCCCCTAAGTACCTACCCTGCA
CTATGTAGATTGGGGCAAATCGGATGCATCCCCAAAAATTGGCTGTCTCT
GATTTTCCGCTCTTCCCTCCTGCTTCGATGGCTGCTTTCGTCTCTCAACA
TTTGCCTGCCCCACGCACAGGTCGAAGAAGTGGCACGAGGATGTTGGGGA
GGACGACCTCCACGAGGAAATCGCGTCGCCCCCGGCCAAGGACGGCTTCG
GCATCTGATCGTCTGGCTTTCCTGTACATATGAGTTTGGGTGTTTTGGAC
CGCCCAACTTTCATATTACGGGGGCTGGTTGGGGGGTGTTTGTCGGCACC
TACCTGAGGTCTCAGCTTAGAAGAGGCGAATGACGGGCCTGTATTATATA
ATCTGAGAGAACACCCTCAACAAGACGCAGGGAAGGCGACTGCGGCGCCG
CCATGTAATCAGTAGGAAACGAAACAACACTGCTCTCTAGCAGCGTAAAG
AGTATTATGAAAAGATGGCGGTCACCGTTCGTATCTCGGCCGTCAGGCAG
TCAGTGTGGGGGCTCCTATTTAGATTATATTGTTTTTGCGAAACTCGGCA
GAAATAATTGTATTATTGTAAACGATAAGCGTCATGGCACTTATTTGCAC
TTACTTTGAGCGACAGCAAAGCAAAGAGTGTCCCTTGCTGGGTGGAGGAG
TACCGGCGGGGGGGGGGTGCAAAAGGTGCACGTTAAGGAAACTAGGTAGC
TATCGAAGCATCGGCATCGTTCATCGAGGTCGGGATCAACGAAGAAGTTA
GCGTCCGCATCTCTGGCACGAGCCGGGGGTTATAACGTCCGCATCTGGCA
GGCCTCCCTCTGGCTCGTATGCCAGATGCGGACGCTGTCTTAAATTGTTG
ACCCCGGTGTCAAGATGACGTCCGCACCTGGCAGGTCCTATTTTGGCTCG
CGCCCTACATACAACAACTTGGAGGAAGAGGGACTTTTGCAGACACGAAA
ATAGTAACAAACGTCCACGTTCGAATTGGTCGTCCGCAGACATGATGTTT
GCCGGTTGTAGTATTTTAGTCTTTTTTGTTGTATCTGGCGTGTTTTTTGT
GCATCTGATGTGTTAGGAGATGTTTTTGTGGTGTTTGCTTCGCGTCGCGG
CCAACCTCCAATGATCCTGAGGCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1634:10768..15094-

>mRNA_L-elsbetiae_contig1634.4317.1 ID=mRNA_L-elsbetiae_contig1634.4317.1|Name=mRNA_L-elsbetiae_contig1634.4317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig1634:10768..15094- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAAACCGGTTACATTGCTCTCTGCTGCATGGTAGGGGCGGGGGC
TTTCATCGTTCCTATTCCCCCGCCGCTTCAGGCCTACTCGCCGCGATCGC
CTCGCTTCAACTCCCGATCCGCCGTCGGAGGGGAATCCGATGAAGTGAGC
GTGTTCGACGCGGGCGAGGCTGCTGTATCATGGGACGACTACAAGAAGCA
GAAACCGAATGAATACAAGATGAAGAAAACCGGTTACATTGCTCTCTGCT
GCATGGTAGGGGCGGGGGCTTTCATCGTTCCTATTCCCCCGCCGCTTCAG
GCCTACTCGCCGCGATCGCCTCGCTTCAACTCCCGATCCGCCGTCGGAGG
GGAATCCGATGAAGTGAGCGTGTTCGACGCGGGCGAGGCTGCTGTATCAT
GGGACGACTACAAGAAGCAGAAACCGAATGAATACAAGCTGGACGAGGTG
GACGAAATGCAGTGCTGGAAGACGGACGAGTGCCCCGTGGAGGACGCTTC
GAAGTTCACCAAAGCCTGGCAAGTTCACAGCGCCGAGAGGAATCCCACCA
CGGAGACGCACTTTGACAGCGAGCTGGACGAGGTGGACGAAATGCAGTGC
TGGAAGACGGACGAGTGCCCCGTGGAGGACGCTTCGAAGTTCACCAAAGC
CTGGCAAGTTCACAGCGCCGAGAGGAATCCCACCACGGAGACGCACTTTG
ACAGCGAGGGGGAGTGGGAGGAAGAAACCAAGTGGGGGAGTGGGAGGAAG
AAACCAAGTGGTCGAAGAAGTGGCACGAGGATGTTGGGGAGGACGACCTC
CACGAGGAAATCGCGTCGCCCCCGGCCAAGGACGGCTTCGGCATCTGAGT
CGAAGAAGTGGCACGAGGATGTTGGGGAGGACGACCTCCACGAGGAAATC
GCGTCGCCCCCGGCCAAGGACGGCTTCGGCATCTGA
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