mRNA_L-elsbetiae_contig16339.4316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16339.4316.1
Unique NamemRNA_L-elsbetiae_contig16339.4316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16339.4316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16339contigL-elsbetiae_contig16339:2183..2863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size136
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.5877001-CDS-L-elsbetiae_contig16339:2182..22541622815674.5877001-CDS-L-elsbetiae_contig16339:2182..2254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16339 2183..2254 -
1691683030.1248112-CDS-L-elsbetiae_contig16339:2182..22541691683030.1248112-CDS-L-elsbetiae_contig16339:2182..2254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16339 2183..2254 -
1622815674.5999196-CDS-L-elsbetiae_contig16339:2800..28631622815674.5999196-CDS-L-elsbetiae_contig16339:2800..2863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16339 2801..2863 -
1691683030.1371644-CDS-L-elsbetiae_contig16339:2800..28631691683030.1371644-CDS-L-elsbetiae_contig16339:2800..2863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16339 2801..2863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16339.4316.1prot_L-elsbetiae_contig16339.4316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16339 2183..2863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16339.4316.1

>prot_L-elsbetiae_contig16339.4316.1 ID=prot_L-elsbetiae_contig16339.4316.1|Name=mRNA_L-elsbetiae_contig16339.4316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
CRGNPAGTLQAVLNPAITKTGWGQKSNELLQDPLSTVYPSKRRG*
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mRNA from alignment at L-elsbetiae_contig16339:2183..2863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16339.4316.1 ID=mRNA_L-elsbetiae_contig16339.4316.1|Name=mRNA_L-elsbetiae_contig16339.4316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=681bp|location=Sequence derived from alignment at L-elsbetiae_contig16339:2183..2863- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGAGGAAATCCAGCCGGAACACTGCAAGCAGTGCTGAACCCGGCGAT
TACAAAAACAGGTGTGAAAATGACGCTCGATGAGCGTCAATCAGTTTTCA
CACTGATTAGAACAGATACTACACATGATCTTAGCCAAAAGGCCGAGAAG
GTATACTGAAACCCTGACCATGGTCCCGCTTTATATATACCAGTACGCCG
TTAAGCACACGGTTTGCTCTGCGCCAAATGACCATTTTGTGCAGAAATGG
CAACGTTTGTTTCTCCAAAGAGGACTCCAGACTCCAGCAGTCTCCGGTTT
TGGGGGGACAAGAGAGAAGAAAGCAGCAGCAATATAGCCGCGACCGAGAG
ACGGGTGCACCGTAGCAGCAGAAGCTCGGCAGCAGAACAGCACAAAAATC
ACGTAGTACGTTGTGCAAATAGCGCGTCTCACAACCGGACGTTGATTGAT
GTGCGGGCCTTGGAATTCAATATATGTTATGTATGTAGTCCGCGTTTGTG
TGGTGTGTTGTGGTGGGGTGGTGGGGTAGGATGGTAGTTGGTCGGTTGTG
TCAGTTGTTTCGTTGTGGTTGGTGGTTGGTGGTGCTTTGGTTGTTGGTTA
CCCCACAAGTGGGGTCAAAAATCGAATGAACTCCTTCAGGATCCTCTCAG
CACGGTTTATCCTAGTAAAAGGCGAGGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16339:2183..2863-

>mRNA_L-elsbetiae_contig16339.4316.1 ID=mRNA_L-elsbetiae_contig16339.4316.1|Name=mRNA_L-elsbetiae_contig16339.4316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig16339:2183..2863- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGAGGAAATCCAGCCGGAACACTGCAAGCAGTGCTGAACCCGGCGAT
TACAAAAACAGGTTGCCGAGGAAATCCAGCCGGAACACTGCAAGCAGTGC
TGAACCCGGCGATTACAAAAACAGGTTGGGGTCAAAAATCGAATGAACTC
CTTCAGGATCCTCTCAGCACGGTTTATCCTAGTAAAAGGCGAGGGTAATG
GGGTCAAAAATCGAATGAACTCCTTCAGGATCCTCTCAGCACGGTTTATC
CTAGTAAAAGGCGAGGGTAA
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