mRNA_L-elsbetiae_contig16325.4313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16325.4313.1
Unique NamemRNA_L-elsbetiae_contig16325.4313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16325.4313.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.650e-55
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 QGMAVSTEGFVAVMTSKESTRALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGDLMDLSMSSGVQLSTVYVSQVTPFSATLMAKVPQRDGEVGTA 333
            QGMAVSTEGFVA+MTSKESTRAL+LVVTPDDPMSGGLDVEQAET EARTLLQLMQGIDVARHLPHDALG+LMDLSM +GVQLSTVYVS ++PFSATLMAKVPQRDGE   A
Sbjct:  612 QGMAVSTEGFVAIMTSKESTRALRLVVTPDDPMSGGLDVEQAETPEARTLLQLMQGIDVARHLPHDALGNLMDLSMRTGVQLSTVYVSHISPFSATLMAKVPQRDGETAAA 722
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BLAST of mRNA_L-elsbetiae_contig16325.4313.1 vs. uniprot
Match: K8Z7D4_NANGC (Threonine aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7D4_NANGC)

HSP 1 Score: 85.5 bits (210), Expect = 7.640e-17
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    1 QGMAVSTEGFVAVMTSKEST-----------RALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGDLMDLSMSSGVQLSTVYVSQVT 273
            QG++ S  GFV V+  KE             +ALK+VVTP DPMS GLDV  AET EA TLLQL+Q IDV  +L HDAL  L+ +     V L  V + Q++
Sbjct:   85 QGVSTSERGFVVVLAEKEGEGQEGSEGGRPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQDIDVGSYLKHDALSSLVGVRAGHPVSLKRVVIEQLS 186
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BLAST of mRNA_L-elsbetiae_contig16325.4313.1 vs. uniprot
Match: A0A4D9CZ25_9STRA (Beta_elim_lyase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ25_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.150e-16
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    1 QGMAVSTEGFVAVMTSKEST-----------RALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDALGDLMDLSMSSGVQLSTVYVSQVT 273
            QG++ S  GFV V+  KE             +ALK+VVTP DPMS GLDV  AET EA TLLQL+Q IDV  +L HDAL  L+ +     V L  V + Q++
Sbjct:  549 QGVSTSARGFVVVLAEKEGEGQEGSEGGSPRKALKVVVTPSDPMSAGLDVHAAETPEAITLLQLLQDIDVGSYLKHDALSSLVGVRAGHPVSLKRVVIEQLS 650
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BLAST of mRNA_L-elsbetiae_contig16325.4313.1 vs. uniprot
Match: A0A482SPV4_9ARCH (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPV4_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.680e-10
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    4 GMAVSTEGFVAVMTSKESTRALKLVVTPDDPMSGGLDVEQAETSEARTLLQLMQGIDVARHLPHDAL 204
            GM+VS +GF   +      R +K+ VTP DPM  GLD +QAE+SEA TLLQL+QGIDV   LP  AL
Sbjct:  457 GMSVSDQGFCVFLQGLICDRFVKVQVTPSDPMVYGLDRDQAESSEAVTLLQLLQGIDVESFLPKGAL 523
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16325.4313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KID0_9PHAE1.650e-5589.19Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
K8Z7D4_NANGC7.640e-1747.06Threonine aldolase n=1 Tax=Nannochloropsis gaditan... [more]
A0A4D9CZ25_9STRA1.150e-1647.06Beta_elim_lyase domain-containing protein n=3 Tax=... [more]
A0A482SPV4_9ARCH1.680e-1055.22Aminotransferase class I/II-fold pyridoxal phospha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16325contigL-elsbetiae_contig16325:1049..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog2880.D8LF44
Preferred nameTHA1
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008732,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0019752,GO:0042133,GO:0042136,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
EC4.1.2.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size447
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16325.4313.1prot_L-elsbetiae_contig16325.4313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16325 1055..2019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.4428031-UTR-L-elsbetiae_contig16325:1048..10541622815674.4428031-UTR-L-elsbetiae_contig16325:1048..1054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16325 1049..1054 +
1691683030.031017-UTR-L-elsbetiae_contig16325:1048..10541691683030.031017-UTR-L-elsbetiae_contig16325:1048..1054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16325 1049..1054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.4542487-CDS-L-elsbetiae_contig16325:1054..12131622815674.4542487-CDS-L-elsbetiae_contig16325:1054..1213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16325 1055..1213 +
1691683030.0441954-CDS-L-elsbetiae_contig16325:1054..12131691683030.0441954-CDS-L-elsbetiae_contig16325:1054..1213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16325 1055..1213 +
1622815674.4666173-CDS-L-elsbetiae_contig16325:1737..20191622815674.4666173-CDS-L-elsbetiae_contig16325:1737..2019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16325 1738..2019 +
1691683030.0548427-CDS-L-elsbetiae_contig16325:1737..20191691683030.0548427-CDS-L-elsbetiae_contig16325:1737..2019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16325 1738..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16325.4313.1

>prot_L-elsbetiae_contig16325.4313.1 ID=prot_L-elsbetiae_contig16325.4313.1|Name=mRNA_L-elsbetiae_contig16325.4313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MAVSTEGFVAVMTSKESTRALKLVVTPDDPMSGGLDVEQAETSEARTLLQ
LMQGIDVARHLPHDALGDLMDLSMSSGVQLSTVYVSQVTPFSATLMAKVP
QRDGEVGTAPPPVPPPVAAAEEEEAAAAAAAAVSSAAASPEDAWIDG
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mRNA from alignment at L-elsbetiae_contig16325:1049..2019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16325.4313.1 ID=mRNA_L-elsbetiae_contig16325.4313.1|Name=mRNA_L-elsbetiae_contig16325.4313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig16325:1049..2019+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGTATGGCGGTTAGCACGGAAGGCTTCGTGGCGGTGATGACAAGCAA
GGAGTCCACGCGAGCGCTCAAGCTGGTCGTGACGCCGGACGACCCAATGT
CGGGGGGCTTGGACGTGGAGCAGGCGGAGACCTCGGAGGCCCGCACGCTC
TTGCAGCTCATGCAGGTGGGGGGGGGGGAGTGTGCTATCTATAGTTTTGG
GGCCCCCTCTTGCTCGTTGACCGACCGCGCATCAACGTCGGGTGTTGTGT
GTGATGCCCCCCCCCCCCCCCCCCCCCCCCCATTTTTTTTTTTTCTCCCC
CCCCCCGGCGCGCTCCCCCCCCGTGGTTTTTTTTTGTGCCCCAACGTTTT
GTTTNNNNNNNNNNGGCCCCCCCGTGCCCGCGGGCCGCCCCCGCCGCGAG
GGGGGGGGTGGGGGGTGGGGCCCCCCCCCCCCCCCCCAAGATTGTATTTT
TTGTTGCTCCCCTTCGTCGGCGTTGCTCCCCAAGATTGTATTTTTTGTGC
GCCAAGCAATGATTTTACTCTTTTGCGAGAGCTTGTGCCCTTCTTTTCTC
CGGGGACATCGAGGCGTCCGACTGTCCCACGTTGCCAGTGCGGCGCCCAC
TCAGCCGCCGAAGTGACTGCTTACATACCTGTGCTGCCCTCGCCCCCCAC
CGCCCTCCCTCCCGCGACATGGACTCTTTGTTAACAAAGGGCATCGACGT
GGCCCGCCACCTGCCTCACGACGCCCTGGGCGACCTGATGGACCTCTCGA
TGAGCAGCGGCGTCCAGTTGAGCACCGTGTATGTGAGCCAAGTCACGCCG
TTCTCCGCCACCCTCATGGCCAAGGTCCCCCAGCGAGACGGCGAAGTGGG
CACGGCACCCCCCCCGGTCCCCCCTCCCGTCGCTGCCGCCGAAGAAGAGG
AAGCCGCGGCGGCGGCGGCGGCGGCGGTTTCTTCCGCCGCCGCCAGCCCC
GAGGACGCGTGGATCGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16325:1049..2019+

>mRNA_L-elsbetiae_contig16325.4313.1 ID=mRNA_L-elsbetiae_contig16325.4313.1|Name=mRNA_L-elsbetiae_contig16325.4313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig16325:1049..2019+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTTAGCACGGAAGGCTTCGTGGCGGTGATGACAAGCAAGGAGTC
CACGCGAGCGCTCAAGCTGGTCGTGACGCCGGACGACCCAATGTCGGGGG
GCTTGGACGTGGAGCAGGCGGAGACCTCGGAGGCCCGCACGCTCTTGCAG
CTCATGCAGATGGCGGTTAGCACGGAAGGCTTCGTGGCGGTGATGACAAG
CAAGGAGTCCACGCGAGCGCTCAAGCTGGTCGTGACGCCGGACGACCCAA
TGTCGGGGGGCTTGGACGTGGAGCAGGCGGAGACCTCGGAGGCCCGCACG
CTCTTGCAGCTCATGCAGGGCATCGACGTGGCCCGCCACCTGCCTCACGA
CGCCCTGGGCGACCTGATGGACCTCTCGATGAGCAGCGGCGTCCAGTTGA
GCACCGTGTATGTGAGCCAAGTCACGCCGTTCTCCGCCACCCTCATGGCC
AAGGTCCCCCAGCGAGACGGCGAAGTGGGCACGGCACCCCCCCCGGTCCC
CCCTCCCGTCGCTGCCGCCGAAGAAGAGGAAGCCGCGGCGGCGGCGGCGG
CGGCGGTTTCTTCCGCCGCCGCCAGCCCCGAGGACGCGTGGATCGACGGG
GGCATCGACGTGGCCCGCCACCTGCCTCACGACGCCCTGGGCGACCTGAT
GGACCTCTCGATGAGCAGCGGCGTCCAGTTGAGCACCGTGTATGTGAGCC
AAGTCACGCCGTTCTCCGCCACCCTCATGGCCAAGGTCCCCCAGCGAGAC
GGCGAAGTGGGCACGGCACCCCCCCCGGTCCCCCCTCCCGTCGCTGCCGC
CGAAGAAGAGGAAGCCGCGGCGGCGGCGGCGGCGGCGGTTTCTTCCGCCG
CCGCCAGCCCCGAGGACGCGTGGATCGACGGG
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