mRNA_L-elsbetiae_contig1632.4311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1632.4311.1
Unique NamemRNA_L-elsbetiae_contig1632.4311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.520e-61
Identity = 100/111 (90.09%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHELAAAIRSGEYTWEELS+DDADIRLKWAG+FHRRKRNPGTFMMR KIPNGIMT+EQLR+ ADAV KYDPSVGVLDITTRMALQLRGVTLED+SG+I++LYDLGLTSLMT
Sbjct:  141 VHELAAAIRSGEYTWEELSVDDADIRLKWAGMFHRRKRNPGTFMMRVKIPNGIMTTEQLRFCADAVGKYDPSVGVLDITTRMALQLRGVTLEDASGVIDNLYDLGLTSLMT 251
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A836CEB3_9STRA (Ferredoxin nitrite reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB3_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.590e-46
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            V E AAA+RSGE TWE+L +DDADIRLKWAGLFHRRKR+PGTFMMR K+PNGI+TS+QLR+ ADAVAKYDPSVGV+DITTR ALQLRGVTLED+  +I      GL S ++
Sbjct:   86 VQEWAAAVRSGELTWEQLDVDDADIRLKWAGLFHRRKRHPGTFMMRMKMPNGIVTSDQLRFCADAVAKYDPSVGVIDITTRQALQLRGVTLEDADRVIEGARAHGLCSYLS 196
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A6S9KFP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KFP9_HETAK)

HSP 1 Score: 157 bits (396), Expect = 5.710e-43
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHE AAAIRSG+Y+WE+++ DD DIRLKWAGLFHRRKR PG FMMR K+PNGI+TSEQLR  AD V  Y   +GV+DITTR  +Q+RG+ LED+S IIN+L ++GLTSLM+
Sbjct:   84 VHEYAAAIRSGQYSWEDINGDDIDIRLKWAGLFHRRKRTPGKFMMRLKVPNGILTSEQLRLFADTVEPYG-EIGVIDITTRQNIQMRGIVLEDASDIINNLNNIGLTSLMS 193
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A7S0I0T3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I0T3_9CRYP)

HSP 1 Score: 143 bits (360), Expect = 1.790e-41
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHE AAAIR G  TWE+L +DDAD+RLKWAGLFHRRKR PG FMMR K+PNG++TS+ +R+ AD V  Y   VGV+DITTR  +QLRG+ L+D + +I+ L   GL+++ +
Sbjct:   26 VHEFAAAIREGTTTWEDLDIDDADVRLKWAGLFHRRKRTPGRFMMRLKVPNGLLTSDHMRFFADTVGIYPADVGVIDITTRQNIQLRGIELQDMTELIDGLQMRGLSNVQS 136
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A7S0D8G4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8G4_9EUKA)

HSP 1 Score: 152 bits (383), Expect = 4.470e-41
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHE AAAIR G+ TWEEL +DDAD+RLKWAGLFHRRKR PG FMMR K+PNG++TSEQ+R+ A +V KY   VGV+DITTR  +QLRG+ L+D++ II+ LY+  L+++ +
Sbjct:   71 VHEFAAAIREGKTTWEELDIDDADVRLKWAGLFHRRKRTPGRFMMRLKVPNGVVTSEQMRFFAKSVGKYPVEVGVIDITTRQNIQLRGLELQDATDIIDGLYERDLSNVQS 181
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: D6BJI1_CHLVU (Nitrite reductase (Fragment) n=1 Tax=Chlorella vulgaris TaxID=3077 RepID=D6BJI1_CHLVU)

HSP 1 Score: 135 bits (341), Expect = 5.150e-38
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLM 330
            V ELA  IR G+ TW +L+LDD D+RLKWAGLFHRRKR PG FMMR K+PNG +T+EQLR++ D +A Y    G  DITTR  +QLRG+TL+D+  II+ L   GLTS M
Sbjct:   98 VTELATLIREGKTTWADLNLDDVDVRLKWAGLFHRRKRTPGRFMMRLKVPNGELTAEQLRFLGDCIAPYGED-GCADITTRANIQLRGITLDDADHIIDGLKQRGLTSFM 206
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: Q7XYQ0_BIGNA (Ferredoxin nitrite reductase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYQ0_BIGNA)

HSP 1 Score: 143 bits (360), Expect = 1.310e-37
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHE AAAIR G  TWE+L +DDAD+RLKWAGLFHRRKR PG FMMR K+PNG++TS+ +R+ AD V  Y   VGV+DITTR  +QLRG+ L+D + +I+ L   GL+++ +
Sbjct:  123 VHEFAAAIREGTTTWEDLDIDDADVRLKWAGLFHRRKRTPGRFMMRLKVPNGLLTSDHMRFFADTVGIYPADVGVIDITTRQNIQLRGIELQDMTELIDGLQMRGLSNVQS 233
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A7S2QSF0_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSF0_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 2.320e-37
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            VHE AAAIR G+ TWEEL +DDAD+RLKWAGLFHRRKR PG FMMR K+PNG + S+ +R+ AD+V  Y   VGV+DITTR  +QLRG+ L+D + +I+ L + GL+++ +
Sbjct:  181 VHEFAAAIREGKTTWEELDIDDADVRLKWAGLFHRRKRTPGRFMMRLKVPNGYVNSDHMRFFADSVGIYPVEVGVIDITTRQNIQLRGLELQDMTDLIDGLAERGLSNVQS 291
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A7R9YHX7_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YHX7_DIALT)

HSP 1 Score: 137 bits (346), Expect = 6.880e-37
Identity = 63/111 (56.76%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTSLMT 333
            +HEL+A +R+GE TWEEL+LDD ++RLKWAG FHR K  P TFM+R K+PNG++T+ Q R  AD V  Y P +GV+DITTR  +QLRG+TLED+S + + L + GL S M+
Sbjct:  112 IHELSAKLRAGECTWEELNLDDINLRLKWAGFFHRPKEAPRTFMVRLKVPNGVITAAQARVFADLVEPYGPKLGVVDITTRQNIQLRGITLEDASHVADALLECGLGSFMS 222
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BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Match: A0A1X6P1I5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1I5_PORUM)

HSP 1 Score: 138 bits (348), Expect = 4.580e-36
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIPNGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIINDLYDLGLTS 324
            +HELAA +++GE  WE+L +DD D+RLKWAGLFHRRKR PG +MMR K+PNGI+TS QLR++A  +A Y    G  DITTRM +QLRG+  ED++ I + LY+ GLTS
Sbjct:  104 IHELAALLKAGETKWEDLDVDDMDMRLKWAGLFHRRKRTPGRYMMRLKVPNGILTSTQLRFLASCIAPYGED-GCADITTRMNIQLRGIVTEDAAAICDGLYENGLTS 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1632.4311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ4_ECTSI1.520e-6190.09Ferredoxin nitrite reductase n=2 Tax=Ectocarpus Ta... [more]
A0A836CEB3_9STRA1.590e-4672.97Ferredoxin nitrite reductase n=1 Tax=Tribonema min... [more]
A0A6S9KFP9_HETAK5.710e-4367.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0I0T3_9CRYP1.790e-4158.56Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0D8G4_9EUKA4.470e-4162.16Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
D6BJI1_CHLVU5.150e-3860.00Nitrite reductase (Fragment) n=1 Tax=Chlorella vul... [more]
Q7XYQ0_BIGNA1.310e-3758.56Ferredoxin nitrite reductase n=1 Tax=Bigelowiella ... [more]
A0A7S2QSF0_9EUKA2.320e-3758.56Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A7R9YHX7_DIALT6.880e-3756.76Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A1X6P1I5_PORUM4.580e-3659.26Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1632contigL-elsbetiae_contig1632:21143..22084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue5.1e-51
Seed eggNOG ortholog2880.D7FVZ4
Preferred nameNIR
KEGG rclassRC00176
KEGG koko:K00366
KEGG ReactionR00790
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010167,GO:0016020,GO:0016491,GO:0016661,GO:0016662,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050421,GO:0050896,GO:0055114,GO:0098809,GO:1901698,GO:1901700
EggNOG free text desc.sulfite reductase (ferredoxin) activity
EggNOG OGsCOG0155@1,KOG0560@2759
EC1.7.7.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionferredoxin nitrite reductase
Ec32 orthologEc-01_002720.1
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.3128223-CDS-L-elsbetiae_contig1632:21142..212861622815674.3128223-CDS-L-elsbetiae_contig1632:21142..21286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 21143..21286 +
1691683029.9768806-CDS-L-elsbetiae_contig1632:21142..212861691683029.9768806-CDS-L-elsbetiae_contig1632:21142..21286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 21143..21286 +
1622815674.3258328-CDS-L-elsbetiae_contig1632:21892..220841622815674.3258328-CDS-L-elsbetiae_contig1632:21892..22084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 21893..22084 +
1691683029.9889522-CDS-L-elsbetiae_contig1632:21892..220841691683029.9889522-CDS-L-elsbetiae_contig1632:21892..22084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 21893..22084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1632.4311.1prot_L-elsbetiae_contig1632.4311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1632 21143..22084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1632.4311.1

>prot_L-elsbetiae_contig1632.4311.1 ID=prot_L-elsbetiae_contig1632.4311.1|Name=mRNA_L-elsbetiae_contig1632.4311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
VHELAAAIRSGEYTWEELSLDDADIRLKWAGLFHRRKRNPGTFMMRAKIP
NGIMTSEQLRYMADAVAKYDPSVGVLDITTRMALQLRGVTLEDSSGIIND
LYDLGLTSLMT*
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mRNA from alignment at L-elsbetiae_contig1632:21143..22084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1632.4311.1 ID=mRNA_L-elsbetiae_contig1632.4311.1|Name=mRNA_L-elsbetiae_contig1632.4311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig1632:21143..22084+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCACGAGCTCGCCGCCGCGATCCGATCTGGCGAGTACACCTGGGAAGA
GCTCAGCCTGGACGACGCCGATATCCGACTGAAGTGGGCGGGGCTGTTTC
ACCGCAGGAAGAGAAACCCGGGGACCTTCATGATGCGCGCCAAGGTGAAG
GGAAGTGAAGGAAGGAAAGAGAGAGGGAGATTTGACAGCTGCAGAAAAAT
TGGAGGAATGAAAAATGGTTTTGTCTTTTGAGATTTCGCCCCCTCAATCA
ATCAAGTCTTCACAGACGAAATTAATAAATGCATCGTCGCTTCGCGCCAG
CCATGTTTGTTGCACGTGCATACGGCAAGCAGCGGCCGACGTCGCATATG
GTATGTATGTATGTATGTATGTATGTATGCACGCACGGCGTGAGTGTCGC
AGGCTTACGGCCAGTGCCTGGTGTGCAGCAAGCAGCAGCATGTACGCAAG
TGTGTGTGGAACGCGCGCCGGCAATGTTTTTTTTCTGCATCTTGACCGTT
CTAAAAGGGTCATTTCGGCGCGTTGGAGTTGGCCATCCGCTGCTCCGTGG
TACCTCTCATCCACTGCCGTAGTCGTCCGGTCGTCAGCCGCTAGATACAG
CAGTACCGGTTAGGACAGCTCAGCTCGACGGCCTTGAAACCCAATCCAAC
CCAACGCAACCCGACCCTACCCTACCCTACACGACCCAACCAACTCACGC
ACGACCGGCATCATGCTGCATGACGTCACCGAACTATGTATGATATGTAG
ATCCCGAACGGCATCATGACGTCGGAACAGCTGAGATACATGGCCGACGC
CGTGGCCAAGTACGACCCGTCCGTCGGCGTCCTGGACATCACCACGCGCA
TGGCGCTGCAGCTGCGGGGCGTCACCCTGGAGGACTCCTCGGGGATCATC
AACGACCTCTACGACCTGGGGCTGACCTCTCTAATGACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1632:21143..22084+

>mRNA_L-elsbetiae_contig1632.4311.1 ID=mRNA_L-elsbetiae_contig1632.4311.1|Name=mRNA_L-elsbetiae_contig1632.4311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1632:21143..22084+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCACGAGCTCGCCGCCGCGATCCGATCTGGCGAGTACACCTGGGAAGA
GCTCAGCCTGGACGACGCCGATATCCGACTGAAGTGGGCGGGGCTGTTTC
ACCGCAGGAAGAGAAACCCGGGGACCTTCATGATGCGCGCCAAGGTGCAC
GAGCTCGCCGCCGCGATCCGATCTGGCGAGTACACCTGGGAAGAGCTCAG
CCTGGACGACGCCGATATCCGACTGAAGTGGGCGGGGCTGTTTCACCGCA
GGAAGAGAAACCCGGGGACCTTCATGATGCGCGCCAAGATCCCGAACGGC
ATCATGACGTCGGAACAGCTGAGATACATGGCCGACGCCGTGGCCAAGTA
CGACCCGTCCGTCGGCGTCCTGGACATCACCACGCGCATGGCGCTGCAGC
TGCGGGGCGTCACCCTGGAGGACTCCTCGGGGATCATCAACGACCTCTAC
GACCTGGGGCTGACCTCTCTAATGACGTGAATCCCGAACGGCATCATGAC
GTCGGAACAGCTGAGATACATGGCCGACGCCGTGGCCAAGTACGACCCGT
CCGTCGGCGTCCTGGACATCACCACGCGCATGGCGCTGCAGCTGCGGGGC
GTCACCCTGGAGGACTCCTCGGGGATCATCAACGACCTCTACGACCTGGG
GCTGACCTCTCTAATGACGTGA
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