mRNA_L-elsbetiae_contig1632.4310.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1632.4310.1
Unique NamemRNA_L-elsbetiae_contig1632.4310.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1632.4310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1632contigL-elsbetiae_contig1632:2970..3595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size626
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1632.4310.1prot_L-elsbetiae_contig1632.4310.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1632 2974..3294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.2575893-UTR-L-elsbetiae_contig1632:2969..29731622815674.2575893-UTR-L-elsbetiae_contig1632:2969..2973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1632 2970..2973 +
1691683029.9439623-UTR-L-elsbetiae_contig1632:2969..29731691683029.9439623-UTR-L-elsbetiae_contig1632:2969..2973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1632 2970..2973 +
1622815674.2786455-UTR-L-elsbetiae_contig1632:3294..35951622815674.2786455-UTR-L-elsbetiae_contig1632:3294..3595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1632 3295..3595 +
1691683029.9647262-UTR-L-elsbetiae_contig1632:3294..35951691683029.9647262-UTR-L-elsbetiae_contig1632:3294..3595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1632 3295..3595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.2687428-CDS-L-elsbetiae_contig1632:2973..32941622815674.2687428-CDS-L-elsbetiae_contig1632:2973..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 2974..3294 +
1691683029.9548433-CDS-L-elsbetiae_contig1632:2973..32941691683029.9548433-CDS-L-elsbetiae_contig1632:2973..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1632 2974..3294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1632.4310.1

>prot_L-elsbetiae_contig1632.4310.1 ID=prot_L-elsbetiae_contig1632.4310.1|Name=mRNA_L-elsbetiae_contig1632.4310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MFRLRQPATAAAAPAAAAGMLHLGVGVILQNRSCSRSHPTHHMTQHANHT
YTPTPPAHVHCQTPLRFSYTSNRCRSICQCWQRFRRTFSAPSFFDKTTAI
DHRFCW*
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mRNA from alignment at L-elsbetiae_contig1632:2970..3595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1632.4310.1 ID=mRNA_L-elsbetiae_contig1632.4310.1|Name=mRNA_L-elsbetiae_contig1632.4310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=626bp|location=Sequence derived from alignment at L-elsbetiae_contig1632:2970..3595+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCATGTTTCGTCTCCGGCAGCCTGCTACAGCTGCCGCCGCCCCTGCCG
CTGCTGCTGGGATGTTGCATTTGGGAGTTGGGGTTATTTTACAAAATCGG
TCTTGCTCTCGCTCTCATCCTACGCATCACATGACGCAGCATGCAAACCA
CACATACACACCCACACCACCAGCACATGTACATTGCCAAACACCTCTTC
GATTTTCGTACACCAGCAATCGGTGTAGATCGATCTGCCAGTGTTGGCAA
CGATTCCGCCGCACTTTTTCCGCGCCGTCTTTTTTCGACAAAACTACAGC
AATAGACCACCGTTTCTGTTGGTAGAGGTGGGAATAGAACCGTGTGGTGT
TGGTAGAGTACCCCAAGCCAAAAAAATCCGGTCGGAGGGCGGTTGTATCA
GCCGGGGAGGAAAAATGGCGTTTTGGGATATAGGCCGGAGATACGGAGGC
ATTTCAGGTAGGCGGGGCCCAACACCTGTTGGCCCCGTAAAAGTTTTTGA
CGTTTTGCCAGTCCAACACCTCACTTACGCTGCCTGTAAGGCACGATATT
TTGTTGGCTACCCAAAGTAACACTGCTAGGATGTTTTATTGTCGGTTGTC
TGACTTGCGTGTGCGCGTTCCAGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1632:2970..3595+

>mRNA_L-elsbetiae_contig1632.4310.1 ID=mRNA_L-elsbetiae_contig1632.4310.1|Name=mRNA_L-elsbetiae_contig1632.4310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1632:2970..3595+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCGTCTCCGGCAGCCTGCTACAGCTGCCGCCGCCCCTGCCGCTGC
TGCTGGGATGTTGCATTTGGGAGTTGGGGTTATTTTACAAAATCGGTCTT
GCTCTCGCTCTCATCCTACGCATCACATGACGCAGCATGCAAACCACACA
TACACACCCACACCACCAGCACATGTACATTGCCAAACACCTCTTCGATT
TTCGTACACCAGCAATCGGTGTAGATCGATCTGCCAGTGTTGGCAACGAT
TCCGCCGCACTTTTTCCGCGCCGTCTTTTTTCGACAAAACTACAGCAATA
GACCACCGTTTCTGTTGGTAGATGTTTCGTCTCCGGCAGCCTGCTACAGC
TGCCGCCGCCCCTGCCGCTGCTGCTGGGATGTTGCATTTGGGAGTTGGGG
TTATTTTACAAAATCGGTCTTGCTCTCGCTCTCATCCTACGCATCACATG
ACGCAGCATGCAAACCACACATACACACCCACACCACCAGCACATGTACA
TTGCCAAACACCTCTTCGATTTTCGTACACCAGCAATCGGTGTAGATCGA
TCTGCCAGTGTTGGCAACGATTCCGCCGCACTTTTTCCGCGCCGTCTTTT
TTCGACAAAACTACAGCAATAGACCACCGTTTCTGTTGGTAG
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