mRNA_L-elsbetiae_contig16292.4299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16292.4299.1
Unique NamemRNA_L-elsbetiae_contig16292.4299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.500e-42
Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV+EHSELDLDV D+E N DL T  G++AA+TAYSEG NS K+T +RTVQGFST A EKLTGE  +D+W AYWG+PDYAD FT  ACQGT AF G  +  RSE CLKGAQ
Sbjct:  201 DVVEHSELDLDVADMETNADLETEVGLAAAYTAYSEGGNSEKSTEIRTVQGFSTGADEKLTGEATFDVWEAYWGSPDYADQFTSAACQGTGAFEGAEMVTRSECCLKGAQ 310          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 9.040e-40
Identity = 72/110 (65.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV+EHSELDLDV D+EA  DL + AG++AA+TAYSEG NS KT   RT+QG STDA EKLTGE  +D+W AYWG+PDYAD +T  ACQGT  F G  +  RSE CLKGAQ
Sbjct:  412 DVVEHSELDLDVADMEAGTDLESEAGLTAAYTAYSEGGNSEKTDSTRTLQGLSTDAQEKLTGEATFDVWEAYWGSPDYADQYTSAACQGTGTFEGAEMVTRSECCLKGAQ 521          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.440e-37
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV+EHSELDLD+ ++E   DL T AG +AA+TAYS G NS KT  +RT+QGFST A EKL+GE+++D++ AYWG+ DYAD FT GAC GTE F   ++  R+E C+KGAQ
Sbjct:   37 DVVEHSELDLDMQELEEGADLQTDAGFAAAYTAYSVGGNSEKTDSIRTIQGFSTGAQEKLSGEKWFDVYEAYWGSTDYADQFTSGACNGTEQFDDASVETRAEGCVKGAQ 146          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.430e-30
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLK-TTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV+EHS++DLD L +E N DL T  G +AA+ AYS G NS+    G RT+Q FSTDA EKL GE++++++ AYWGAPDYAD FT  AC GT ++      +R+EAC KGAQ
Sbjct:  398 DVVEHSKIDLDTLAMETNADLQTEEGFTAAYEAYSLGGNSMYGEEGFRTIQAFSTDAEEKLGGEKWFEVYQAYWGAPDYADRFTSAACTGTGSYETVEPVVRAEACTKGAQ 508          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A7R9Y8Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.790e-19
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGA 327
            DV EH+++DLD  + +    LL     +AA   Y  G  S+KT+GLRT+QGFST+A  KL+GE  Y+++ AYWGA DYAD F   A  GT  +   +  +R E   KGA
Sbjct:  359 DVSEHAQIDLDQDEFDT---LLAAFDFAAAKDIYENGKFSMKTSGLRTLQGFSTEAGTKLSGEDLYELYRAYWGADDYADQFVTAALDGTGPYVDSSDLVRDEIASKGA 464          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: R7QBN5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBN5_CHOCR)

HSP 1 Score: 84.3 bits (207), Expect = 3.640e-17
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTA-GMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV EH+++DLD  D+E  ++ LT      AA   YSEG +S+K+ GLRT+QGFST A +K+  E +++++  +W  P YAD F   A  G   F+G    +R+E   KG+Q
Sbjct:   34 DVDEHAKIDLDQKDMEEELEELTDKIDWDAARKIYSEGEHSMKSEGLRTLQGFSTSAGDKMKNEPYFELFKKFWRTPRYADDFITKALNGLGDFSGTADMLRAECANKGSQ 144          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A7S1TU13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU13_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-14
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTG 285
            DVI+H+ +DLD  +   +   L     ++A T Y  G  S+K++GLRT+ GFSTDA  KL GE+ Y+++ AYWG+  YAD     A  GT  + G
Sbjct:  317 DVIQHARIDLDHQEFNTH---LENGDWASAKTIYQNGKYSMKSSGLRTIAGFSTDAGTKLAGEELYELYRAYWGSDSYADDMVVAALDGTGIYAG 408          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A7S1IQR3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQR3_9EUGL)

HSP 1 Score: 72.8 bits (177), Expect = 1.150e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNIRSEACLKG 324
            DV EH E+DLD   IE     L     + A T Y  G NS K++GLRT+QGFST         + Y ++ AY+G+  YA+ F   A +GT  F G+    R E+  KG
Sbjct:  364 DVKEHGEVDLDQSAIET---ALAAGDFTTARTIYVNGQNSQKSSGLRTLQGFSTQMSAGKQQAELYQLFKAYYGSATYANDFVMAALEGTGVFAGKATVARQESVKKG 468          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A7S1IR95_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IR95_9EUGL)

HSP 1 Score: 63.9 bits (154), Expect = 9.870e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGAPDYADIF 246
            DV EHS++DLD L+  A + L      + A   Y +G NS K+TG+RT+QGFST         Q Y ++V Y+ +  YAD F
Sbjct:   48 DVAEHSKIDLDQLEFNARLQL---GNWTGAMEIYQQGANSQKSTGMRTLQGFSTSISSTKADNQLYQLFVTYYQSATYADDF 126          
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Match: A0A6T6KQ80_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6KQ80_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-9
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    1 DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQGFSTDALEKLTGEQFYDIWVAYWGA-PDYADIFTRGACQGTEAFTGENLNIRSEACLKGAQ 330
            DV E  E+DLDV D+ A  D        A F    +G NS  +TGLRT++GFS  A EK++  + Y ++ AY+   P YA  +   A   +  F G     R+EA +KGAQ
Sbjct:   52 DVRERGEIDLDVNDMSAFADSFDFGQAKAIF---QQGKNSRSSTGLRTLEGFSVQAEEKMSDWESYKLFKAYYNDNPAYARDYVLDALDASGEFGGAPDWTRAEASVKGAQ 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16292.4299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KYS6_9PHAE5.500e-4268.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ42_ECTSI9.040e-4065.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFX4_ECTSI3.440e-3759.09Probable high CO2 inducible periplasmic protein n=... [more]
D8LDE3_ECTSI2.430e-3054.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9Y8Q2_9STRA3.790e-1944.95Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
R7QBN5_CHOCR3.640e-1741.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1TU13_9STRA1.200e-1442.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1IQR3_9EUGL1.150e-1239.81Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1IR95_9EUGL9.870e-1141.46Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6T6KQ80_9RHOD1.010e-938.74Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16292contigL-elsbetiae_contig16292:2339..3649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.5e-34
Seed eggNOG ortholog2880.D8LQ42
Hectar predicted targeting categoryother localisation
EggNOG OGs29F58@1,2RNAK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size335
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.7468843-CDS-L-elsbetiae_contig16292:2338..24571622815672.7468843-CDS-L-elsbetiae_contig16292:2338..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16292 2339..2457 +
1691683028.9882393-CDS-L-elsbetiae_contig16292:2338..24571691683028.9882393-CDS-L-elsbetiae_contig16292:2338..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16292 2339..2457 +
1622815672.7608497-CDS-L-elsbetiae_contig16292:3435..36491622815672.7608497-CDS-L-elsbetiae_contig16292:3435..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16292 3436..3649 +
1691683029.0016587-CDS-L-elsbetiae_contig16292:3435..36491691683029.0016587-CDS-L-elsbetiae_contig16292:3435..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16292 3436..3649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16292.4299.1prot_L-elsbetiae_contig16292.4299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16292 2339..3649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16292.4299.1

>prot_L-elsbetiae_contig16292.4299.1 ID=prot_L-elsbetiae_contig16292.4299.1|Name=mRNA_L-elsbetiae_contig16292.4299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
DVIEHSELDLDVLDIEANVDLLTTAGMSAAFTAYSEGNNSLKTTGLRTVQ
GFSTDALEKLTGEQFYDIWVAYWGAPDYADIFTRGACQGTEAFTGENLNI
RSEACLKGAQ*
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mRNA from alignment at L-elsbetiae_contig16292:2339..3649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16292.4299.1 ID=mRNA_L-elsbetiae_contig16292.4299.1|Name=mRNA_L-elsbetiae_contig16292.4299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1311bp|location=Sequence derived from alignment at L-elsbetiae_contig16292:2339..3649+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTAATCGAGCATTCCGAGCTGGACCTGGACGTCCTTGACATCGAAGC GAACGTCGATCTGCTAACAACCGCCGGAATGAGTGCAGCGTTCACTGCCT ATTCGGAGGGTAACAACAGGTGTGTTGACGCATAATATCGGTACATTGTC TAGACTACATACCTAGATTACATATATCTATCGGTACATACATGCATACA TCAAGCGCGTAGATAGGTATACGAGTACGTACGCGACTGCATAGCGCGCA ATCTCGCGCTATGTACGAGCAAAGAAAGGACCTGCTAACAAAAGAAAGGG CCTGCTTCCACTGCTTCCACTACATAGAGATATGAGTACTAGGGTACTGC TGTGAATCAGAAAAGGTTCCGTTCTTTCAGAAAAAAAGATCCGTCTGAAA TTCCGAAATTCCAATTCCGACAGCACCATTTCTTGAGTGCAGGTTATTCA CAGCATCGCCAGGGTGTGCGAAGGGAAGCCGTGAATTACGACCCACTTGA ACCCGGTTTTGGTTGTTGAGGCACTCGCCCTTTGTTCGACTTGAGCCTGG CTCTGCAGGCCGTTCAAAAATTAAAACTCCCATCAAACACGCACACCGCG AGGGCCGTCTGTCTAACCCAGCCAGCCAGCCAGCTGTCTGTGTACGGTGT ACCCCTACCGCACGACTGCTGGAGCAAGGCCTTCTTGCTCTAGTGTAATA TTGTTTATTGCATGTCTTGTGACATTTCGTGTGGGAACACCGATGAAGGG CGACACGCCCTTAATGAAATTGTGCACACTTTTTTTGACCAAGCCTTTCA AAGCGGTATTTAGTGGTAAAAGATGAACGTAAACATGCACACATGAGCCA AAGGTATACAGAGTGATGCGTCCATGCCAAACACGCCTTTAATATCTAGA TGCTGAACCGGATCATGCTGAGACCTCTAGATAGGTTTAAAACCTCCCGA TACGGCAGGCGCCCCACCCACTTTGTTCTACATATATCTCACCACATACA TACACAGCGGCCTGTTTACATCTCACCACCAAACACAACCTCTCACTTTA CGCTTTCGCCCCTTCTCGACACACACCCATGGCACGTCCTCGCACAGCCT GAAGACGACGGGCCTCCGCACCGTCCAGGGATTCTCAACGGACGCGCTGG AGAAGCTCACCGGAGAGCAGTTTTACGACATCTGGGTGGCCTACTGGGGC GCCCCGGACTACGCCGACATTTTCACGAGGGGGGCCTGCCAGGGGACGGA GGCCTTCACAGGCGAAAACCTCAACATACGCTCGGAGGCTTGCCTCAAGG GAGCACAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16292:2339..3649+

>mRNA_L-elsbetiae_contig16292.4299.1 ID=mRNA_L-elsbetiae_contig16292.4299.1|Name=mRNA_L-elsbetiae_contig16292.4299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig16292:2339..3649+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTAATCGAGCATTCCGAGCTGGACCTGGACGTCCTTGACATCGAAGC
GAACGTCGATCTGCTAACAACCGCCGGAATGAGTGCAGCGTTCACTGCCT
ATTCGGAGGGTAACAACAGGACGTAATCGAGCATTCCGAGCTGGACCTGG
ACGTCCTTGACATCGAAGCGAACGTCGATCTGCTAACAACCGCCGGAATG
AGTGCAGCGTTCACTGCCTATTCGGAGGGTAACAACAGCCTGAAGACGAC
GGGCCTCCGCACCGTCCAGGGATTCTCAACGGACGCGCTGGAGAAGCTCA
CCGGAGAGCAGTTTTACGACATCTGGGTGGCCTACTGGGGCGCCCCGGAC
TACGCCGACATTTTCACGAGGGGGGCCTGCCAGGGGACGGAGGCCTTCAC
AGGCGAAAACCTCAACATACGCTCGGAGGCTTGCCTCAAGGGAGCACAGT
AACCTGAAGACGACGGGCCTCCGCACCGTCCAGGGATTCTCAACGGACGC
GCTGGAGAAGCTCACCGGAGAGCAGTTTTACGACATCTGGGTGGCCTACT
GGGGCGCCCCGGACTACGCCGACATTTTCACGAGGGGGGCCTGCCAGGGG
ACGGAGGCCTTCACAGGCGAAAACCTCAACATACGCTCGGAGGCTTGCCT
CAAGGGAGCACAGTAA
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