mRNA_L-elsbetiae_contig1628.4290.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1628.4290.1
Unique NamemRNA_L-elsbetiae_contig1628.4290.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1628.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1628contigL-elsbetiae_contig1628:11327..11665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size340
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.0102336-CDS-L-elsbetiae_contig1628:11326..116651622815672.0102336-CDS-L-elsbetiae_contig1628:11326..11665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 11327..11665 +
1691683028.440687-CDS-L-elsbetiae_contig1628:11326..116651691683028.440687-CDS-L-elsbetiae_contig1628:11326..11665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 11327..11665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1628.4290.1prot_L-elsbetiae_contig1628.4290.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1628 11327..11665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1628.4290.1

>prot_L-elsbetiae_contig1628.4290.1 ID=prot_L-elsbetiae_contig1628.4290.1|Name=mRNA_L-elsbetiae_contig1628.4290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
WSCFASFGLGTHVVSRGAFCGGVGTQGWGRRNFSRRIVVFISMNAAGLLG
GVSRHSGTSGRQEKGDHRQKAAQQIGPSNDWGNRLMLLTRDAPDHPEGPA
GASVCAGLVEDFN
back to top

mRNA from alignment at L-elsbetiae_contig1628:11327..11665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1628.4290.1 ID=mRNA_L-elsbetiae_contig1628.4290.1|Name=mRNA_L-elsbetiae_contig1628.4290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=339bp|location=Sequence derived from alignment at L-elsbetiae_contig1628:11327..11665+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGTTGTTTCGCCAGCTTCGGCCTGGGCACGCATGTTGTCTCGAGGGG
GGCTTTCTGCGGCGGCGTCGGAACACAAGGATGGGGTCGTCGTAACTTCT
CCCGCCGCATCGTTGTTTTCATCTCTATGAACGCGGCCGGTTTGCTCGGA
GGCGTTTCCAGGCACTCTGGTACCAGTGGTCGTCAGGAAAAGGGCGATCA
CAGACAGAAAGCCGCACAGCAGATCGGCCCTTCCAACGATTGGGGCAACC
GCTTGATGTTGTTGACAAGAGACGCACCCGATCACCCCGAGGGGCCGGCC
GGGGCAAGTGTTTGTGCGGGTTTAGTTGAGGATTTTAAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1628:11327..11665+

>mRNA_L-elsbetiae_contig1628.4290.1 ID=mRNA_L-elsbetiae_contig1628.4290.1|Name=mRNA_L-elsbetiae_contig1628.4290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1628:11327..11665+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGTTGTTTCGCCAGCTTCGGCCTGGGCACGCATGTTGTCTCGAGGGG
GGCTTTCTGCGGCGGCGTCGGAACACAAGGATGGGGTCGTCGTAACTTCT
CCCGCCGCATCGTTGTTTTCATCTCTATGAACGCGGCCGGTTTGCTCGGA
GGCGTTTCCAGGCACTCTGGTACCAGTGGTCGTCAGGAAAAGGGCGATCA
CAGACAGAAAGCCGCACAGCAGATCGGCCCTTCCAACGATTGGGGCAACC
GCTTGATGTTGTTGACAAGAGACGCACCCGATCACCCCGAGGGGCCGGCC
GGGGCAAGTGTTTGTGCGGGTTTAGTTGAGGATTTTAATTGGAGTTGTTT
CGCCAGCTTCGGCCTGGGCACGCATGTTGTCTCGAGGGGGGCTTTCTGCG
GCGGCGTCGGAACACAAGGATGGGGTCGTCGTAACTTCTCCCGCCGCATC
GTTGTTTTCATCTCTATGAACGCGGCCGGTTTGCTCGGAGGCGTTTCCAG
GCACTCTGGTACCAGTGGTCGTCAGGAAAAGGGCGATCACAGACAGAAAG
CCGCACAGCAGATCGGCCCTTCCAACGATTGGGGCAACCGCTTGATGTTG
TTGACAAGAGACGCACCCGATCACCCCGAGGGGCCGGCCGGGGCAAGTGT
TTGTGCGGGTTTAGTTGAGGATTTTAAT
back to top