mRNA_L-elsbetiae_contig1628.4289.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1628.4289.1
Unique NamemRNA_L-elsbetiae_contig1628.4289.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1628.4289.1 vs. uniprot
Match: D8LTI1_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 9.050e-40
Identity = 89/156 (57.05%), Postives = 112/156 (71.79%), Query Frame = 1 
Query:  472 LLAGRSSSSGGSN--------TESVVAADAVGLASTYNRLGLALRDSGSEVFATREAFLAGLSAAPEDLAFLVNGGMARQAAGDIPVAKTLYHRALPLQPNSPKLLHNVGWLEEQAGNGSRASLEAAAAVHASARFVGRQVAHARWQVEVNLKNVQ 915
            LL+GRS++   +N         E++  ADAV LASTYNRLGL LRDSG ++ AT+EAFLAGLS  P+DLA LVNGG+A Q AGDIP AK L+HRAL LQPNSP+LL+N+GWLEEQ G GS+ SLE AA ++  A  +  + +    +VE NL +VQ
Sbjct:  225 LLSGRSAAKVRNNESNNPVIAAETIEVADAVDLASTYNRLGLTLRDSGEDLVATKEAFLAGLSVTPDDLALLVNGGVAHQTAGDIPGAKALFHRALSLQPNSPELLNNLGWLEEQTGGGSKLSLETAAGLYERAIRLLDERSPVLGRVEANLSSVQ 380
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1628.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI1_ECTSI9.050e-4057.05TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1628contigL-elsbetiae_contig1628:5369..8019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue3.9e-28
Seed eggNOG ortholog2880.D8LTI1
KEGG koko:K16531
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size1070
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1628.4289.1prot_L-elsbetiae_contig1628.4289.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1628 6437..7967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.0517583-UTR-L-elsbetiae_contig1628:5368..57511622815672.0517583-UTR-L-elsbetiae_contig1628:5368..5751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 5369..5751 -
1691683028.45161-UTR-L-elsbetiae_contig1628:5368..57511691683028.45161-UTR-L-elsbetiae_contig1628:5368..5751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 5369..5751 -
1622815672.0632136-UTR-L-elsbetiae_contig1628:6275..64361622815672.0632136-UTR-L-elsbetiae_contig1628:6275..6436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 6276..6436 -
1691683028.4727125-UTR-L-elsbetiae_contig1628:6275..64361691683028.4727125-UTR-L-elsbetiae_contig1628:6275..6436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 6276..6436 -
1622815672.1037717-UTR-L-elsbetiae_contig1628:7967..80191622815672.1037717-UTR-L-elsbetiae_contig1628:7967..8019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 7968..8019 -
1691683028.5249014-UTR-L-elsbetiae_contig1628:7967..80191691683028.5249014-UTR-L-elsbetiae_contig1628:7967..8019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1628 7968..8019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.073902-CDS-L-elsbetiae_contig1628:6436..65381622815672.073902-CDS-L-elsbetiae_contig1628:6436..6538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 6437..6538 -
1691683028.4847555-CDS-L-elsbetiae_contig1628:6436..65381691683028.4847555-CDS-L-elsbetiae_contig1628:6436..6538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 6437..6538 -
1622815672.0843763-CDS-L-elsbetiae_contig1628:7057..73331622815672.0843763-CDS-L-elsbetiae_contig1628:7057..7333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 7058..7333 -
1691683028.4948816-CDS-L-elsbetiae_contig1628:7057..73331691683028.4948816-CDS-L-elsbetiae_contig1628:7057..7333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 7058..7333 -
1622815672.0940323-CDS-L-elsbetiae_contig1628:7871..79671622815672.0940323-CDS-L-elsbetiae_contig1628:7871..7967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 7872..7967 -
1691683028.5147924-CDS-L-elsbetiae_contig1628:7871..79671691683028.5147924-CDS-L-elsbetiae_contig1628:7871..7967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1628 7872..7967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1628.4289.1

>prot_L-elsbetiae_contig1628.4289.1 ID=prot_L-elsbetiae_contig1628.4289.1|Name=mRNA_L-elsbetiae_contig1628.4289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MIKRDLIGAVFALKRSLALEPGTTKIMVYLGKVYLELASKALENLSAWAG
QGNGGIDFELDGTPHDGGENEIIGEVIPSIRSMSPGSLLSSAEMYIDQAL
VAGSGLPLARLVKGEVLALGRQHQSAAALFQESIDIYNSTFSPAGAAAAA
VATQRAW*
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mRNA from alignment at L-elsbetiae_contig1628:5369..8019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1628.4289.1 ID=mRNA_L-elsbetiae_contig1628.4289.1|Name=mRNA_L-elsbetiae_contig1628.4289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2651bp|location=Sequence derived from alignment at L-elsbetiae_contig1628:5369..8019- (Laminarionema elsbetiae ELsaHSoW15)
AGTTGCACCCAGACTACGGGTTCGCAATGTTCAACCTCGGGGTGTGAGTC
GGATGATAAAGCGCGACCTCATCGGCGCCGTGTTCGCGTTGAAGCGAAGC
CTTGCGCTCGAGCCTGGGACCACCAAGATCATGGTCTACTTAGGGAAGGC
AAGCACAGCAAGCAGGCTTGTGTCAACATGATCCTAGGATAGCTACAGGT
TCGGCAACAATTGCGCGGCATGGATGGACTTCGCGGCGCCACGGAAACGT
GGCATCGTGGCAACTTTAGATATGGCTTGGAGATCTAAAGTGTATCGGTT
ACTTCAGTGAAGCAGATTACTAGCGTGGGTAGCCTTGGAACGCTGAGACC
GCGATCTATCCGGATAGGTAGGAACCCAAAATGCTGCGTCATTTGTTTTG
CTCTAGTCTTCGTTCCTCATCCCCGTGGCGTAGAAACTCTGACCCAGGCA
TACAGTAGACCTATGGCCGTCGAACTTCAATAAATTCAACGGTAAACCGC
TTCCACATTTCGACAAGTTAGAACTCGCGCAACACGTGTCGGCCGACGAA
ACCAATGTTGCTTTTGGAGCACGCACAACCCACCGCCACTGCCACCGCCC
CCCCCACCACCACCTCTTCCATCTTACGATTTCTTCATCCCCCACCAACA
CTTAACATAATTCCCCAATTGCCCTGGGTAGCACAGGTGTACCTCGAGCT
TGCCTCGAAGGCTTTGGAAAACCTGTCAGCCTGGGCAGGACAGGGAAACG
GAGGCATTGACTTCGAACTTGACGGCACGCCCCACGATGGCGGTGAAAAC
GAGATCATTGGCGAGGTTATCCCAAGCATTCGTTCGATGTCGCCGGGATC
GTTATTGTCGAGTGCGGAGATGTATATCGATCAGGCGTTGGTTGCGGGGT
CTGGGCTGCCGCTGGCCAGGCTCGTCAAAGGAGAGGTGTTAGCCTTGGGA
CGGCAGCATCAGGTGTGTCCTGTTTTTCAACTACCCGACTTAAAGGAATC
CTTACCCTACTTGGCTTCGTTGATCCACACTGTTTGGTGATGCTCGTTTC
TGTTGTCGGGGACTTTCCAGTACATTTTTCCACATTCCATCCGCGCAAGC
TTTAAGGGAGTCCGTGCACTCAGGTTTGGGGCGCCTGATGATGCACCAGG
CTCGGTGATGTGTTTTGCATGTGCTACGTTTGTCACTCAGGAACAAACCC
GGTCCGGCTTCGGGGCACATCATGTACATCAACACACATCGGGCACGTAG
AATTTAGACCAAGTGCTCGAATTATCACTTGGACGAATTTCGAACTAGAG
CTGATGGGAGGTTTCTTGGGGCTCGTGAAAGAGCTCAAAACAGTTGGTTG
GTGAGTTCGTTTTTCTTCACAAGTCGTGCGAAAGAAAATGAAGAAGGCAA
AGCCGCGGACACCTACATAAAACCCACTCGAGAAACCATCTCTCTTGTTC
CGCCCACATGCCCTCTTATGATATGTAACAGAGCGCAGCAGCGTTGTTTC
AGGAGAGTATCGACATATATAACTCCACCTTCTCGCCGGCCGGAGCAGCA
GCAGCGGCGGTAGCAACACAGAGAGCGTGGTAGCAGCGGACGCGGTCGGC
CTTGCCAGTACCTACAACCGGCTTGGTCTTGCCCTGAGAGATTCTGGGAG
CGAGGTTTTTGCCACCAGAGAGGCCTTCCTGGCCGGCTTATCGGCAGCAC
CGGAAGACCTCGCCTTCCTCGTCAACGGTGGAATGGCGCGCCAGGTAAGA
TCTATACCCCACGAGCTGATGGTGGCTGGTAACGATATAGCAGGCATTTC
TGGCGGTGACTCGGCACCGTAGTATGAAGGCACCCACCCTTGCGTAGCGC
CGTACGGACTGCGAAGTCGGTGGCAAGATTCTTCCAGATGATGGGTATTA
TACACTATGGTTTATGTACCACAACATTCAACACATTCATATGAGAGGCA
ATTGAATGGGACGCCTATATCTGTGACCGCAGGTTGAGAAACTCGGGCTA
CTTCTGTGCGTCCACGACACCAAAACACGCAGTTTGTAGCAGGTGGTACG
TATGTTACTTTCATCTAGAAACCTCCCGCACCCCGTCCACCCTGCTGGCC
TATTTTTCTGTGCCTTGGCCAACATCGCACAACGGTATGCCTAAAAGGAA
TCATTTTTTTGGCAAGACACTTACTTGCTGAGTTACAAGCAAGAAATCGC
TTCTGTTTCCCGCAGCACACGTGCTCATTCGTGCCACCAACATCCCGCTC
AATCTCTCGATCCGCCAGGCGGCGGGCGACATCCCCGTTGCGAAAACGCT
CTACCACCGAGCCTTACCCTTGCAACCGAACTCGCCCAAACTATTGCACA
ATGTGGGCTGGCTAGAGGAGCAGGCCGGGAACGGGTCGCGAGCATCTTTG
GAGGCAGCTGCCGCTGTACACGCAAGCGCTAGATTTGTTGGACGCCAGGT
CGCCCATGCCCGTTGGCAGGTGGAAGTCAATCTCAAGAACGTACAGAGAG
GGGGGATGGAAGATAGAGAGGACACGGCGGCGGGCCGCCCAGACACTCAT
ACACAGGTAGACTTTGTAGAAGTACGAAAACATAATTCTTCACAGCGTGG
TGGCAGGAGATGTCCGCCCGGCGATGTACATCGATAAAGAGCGGTTGGAA
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1628:5369..8019-

>mRNA_L-elsbetiae_contig1628.4289.1 ID=mRNA_L-elsbetiae_contig1628.4289.1|Name=mRNA_L-elsbetiae_contig1628.4289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1628:5369..8019- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAAGCGCGACCTCATCGGCGCCGTGTTCGCGTTGAAGCGAAGCCT
TGCGCTCGAGCCTGGGACCACCAAGATCATGGTCTACTTAGGGAAGATGA
TAAAGCGCGACCTCATCGGCGCCGTGTTCGCGTTGAAGCGAAGCCTTGCG
CTCGAGCCTGGGACCACCAAGATCATGGTCTACTTAGGGAAGGTGTACCT
CGAGCTTGCCTCGAAGGCTTTGGAAAACCTGTCAGCCTGGGCAGGACAGG
GAAACGGAGGCATTGACTTCGAACTTGACGGCACGCCCCACGATGGCGGT
GAAAACGAGATCATTGGCGAGGTTATCCCAAGCATTCGTTCGATGTCGCC
GGGATCGTTATTGTCGAGTGCGGAGATGTATATCGATCAGGCGTTGGTTG
CGGGGTCTGGGCTGCCGCTGGCCAGGCTCGTCAAAGGAGAGGTGTTAGCC
TTGGGACGGCAGCATCAGGTGTACCTCGAGCTTGCCTCGAAGGCTTTGGA
AAACCTGTCAGCCTGGGCAGGACAGGGAAACGGAGGCATTGACTTCGAAC
TTGACGGCACGCCCCACGATGGCGGTGAAAACGAGATCATTGGCGAGGTT
ATCCCAAGCATTCGTTCGATGTCGCCGGGATCGTTATTGTCGAGTGCGGA
GATGTATATCGATCAGGCGTTGGTTGCGGGGTCTGGGCTGCCGCTGGCCA
GGCTCGTCAAAGGAGAGGTGTTAGCCTTGGGACGGCAGCATCAGAGCGCA
GCAGCGTTGTTTCAGGAGAGTATCGACATATATAACTCCACCTTCTCGCC
GGCCGGAGCAGCAGCAGCGGCGGTAGCAACACAGAGAGCGTGGTAGAGCG
CAGCAGCGTTGTTTCAGGAGAGTATCGACATATATAACTCCACCTTCTCG
CCGGCCGGAGCAGCAGCAGCGGCGGTAGCAACACAGAGAGCGTGGTAG
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