mRNA_L-elsbetiae_contig1626.4279.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1626.4279.1
Unique NamemRNA_L-elsbetiae_contig1626.4279.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1626.4279.1 vs. uniprot
Match: D8LPI8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI8_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.640e-92
Identity = 136/172 (79.07%), Postives = 151/172 (87.79%), Query Frame = 3 
Query:  552 VARALSPVDFREEAIFDDLDVDGRPSQIHGKGTFSKKGASEGDVLLSVLIPSKAVEKGFAFRG-GGYDCNQHVMHKDGLGVMFIDPATRMRGNFGACREDFKLGVLRLLNHSDDPNIAVSTREAATPAWYEAVGEPFPRWYECRLVASRRIGVDEEMTIQYAVAPKGVKAAK 1064
            +A AL+PVDFR E IF DLDV+GRPSQIHG+GTFSK GAS+ DVLLSV++PSKAVEKGFA    GGYDCNQHVMHKDGLGVMFIDP  RMRGN GAC+EDFKLGVLRLLNHSDDPNIA+STREAA P WYEA+GE F  WYEC LVA+R IGVDEEMTI+YA+APKG++ AK
Sbjct:    1 MAPALTPVDFRGEDIFHDLDVEGRPSQIHGRGTFSKNGASKNDVLLSVILPSKAVEKGFASNSDGGYDCNQHVMHKDGLGVMFIDPGARMRGNLGACKEDFKLGVLRLLNHSDDPNIAISTREAAIPDWYEALGEKFTTWYECTLVATRAIGVDEEMTIEYALAPKGIRLAK 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1626.4279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPI8_ECTSI3.640e-9279.07N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1626contigL-elsbetiae_contig1626:19840..23711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-06_005230.1
Exons3
Model size1182
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1626.4279.1prot_L-elsbetiae_contig1626.4279.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1626 19890..23611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3677406-UTR-L-elsbetiae_contig1626:19839..198891622815671.3677406-UTR-L-elsbetiae_contig1626:19839..19889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 19840..19889 +
1691683028.0630486-UTR-L-elsbetiae_contig1626:19839..198891691683028.0630486-UTR-L-elsbetiae_contig1626:19839..19889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 19840..19889 +
1622815671.4121695-UTR-L-elsbetiae_contig1626:23611..237111622815671.4121695-UTR-L-elsbetiae_contig1626:23611..23711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 23612..23711 +
1691683028.106613-UTR-L-elsbetiae_contig1626:23611..237111691683028.106613-UTR-L-elsbetiae_contig1626:23611..23711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 23612..23711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3791265-CDS-L-elsbetiae_contig1626:19889..202191622815671.3791265-CDS-L-elsbetiae_contig1626:19889..20219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 19890..20219 +
1691683028.0739274-CDS-L-elsbetiae_contig1626:19889..202191691683028.0739274-CDS-L-elsbetiae_contig1626:19889..20219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 19890..20219 +
1622815671.3888426-CDS-L-elsbetiae_contig1626:22793..229821622815671.3888426-CDS-L-elsbetiae_contig1626:22793..22982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 22794..22982 +
1691683028.0856366-CDS-L-elsbetiae_contig1626:22793..229821691683028.0856366-CDS-L-elsbetiae_contig1626:22793..22982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 22794..22982 +
1622815671.3988447-CDS-L-elsbetiae_contig1626:23098..236111622815671.3988447-CDS-L-elsbetiae_contig1626:23098..23611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 23099..23611 +
1691683028.0963676-CDS-L-elsbetiae_contig1626:23098..236111691683028.0963676-CDS-L-elsbetiae_contig1626:23098..23611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 23099..23611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1626.4279.1

>prot_L-elsbetiae_contig1626.4279.1 ID=prot_L-elsbetiae_contig1626.4279.1|Name=mRNA_L-elsbetiae_contig1626.4279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
MSPAIEYAEGVTPAVADFIMAQAGASISVDEVQKKLFDRVVVDGDLKSLP
APKEFDPRFWPGLLSVLQEITRSPSPATEDAGKARGLHKEVVELRKLHSK
RMSWRRWDAKKKAADQAERAKGESERDALKRDVALLEGRFREVEERKLQA
EIRRTPRRLCNEREEVAVARALSPVDFREEAIFDDLDVDGRPSQIHGKGT
FSKKGASEGDVLLSVLIPSKAVEKGFAFRGGGYDCNQHVMHKDGLGVMFI
DPATRMRGNFGACREDFKLGVLRLLNHSDDPNIAVSTREAATPAWYEAVG
EPFPRWYECRLVASRRIGVDEEMTIQYAVAPKGVKAAKRKRRK*
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mRNA from alignment at L-elsbetiae_contig1626:19840..23711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1626.4279.1 ID=mRNA_L-elsbetiae_contig1626.4279.1|Name=mRNA_L-elsbetiae_contig1626.4279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3872bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:19840..23711+ (Laminarionema elsbetiae ELsaHSoW15)
TAGCAGGTAGCGGAGAGTTGGAAACGAGCGAGCATCGTGCTGGGTAAACG
ATGTCGCCGGCGATCGAGTATGCCGAGGGTGTAACACCCGCAGTAGCCGA
CTTCATCATGGCACAGGCTGGAGCCAGCATCTCGGTCGATGAGGTACAAA
AAAAGCTGTTCGACCGAGTTGTTGTGGACGGAGACCTGAAAAGTCTCCCA
GCACCCAAGGAGTTTGACCCACGCTTCTGGCCGGGACTGCTTTCAGTTCT
ACAAGAGATCACCAGGTCTCCTTCTCCTGCTACAGAGGATGCTGGGAAGG
CACGGGGATTGCACAAGGAGGTCGTCGAGTTACGCAAGCTACACAGTAAG
AGGATGTCATGGCGCCGCTGGGATGCCAAAGTGAGTGAGTGAGTGTGTGT
GTGTTTTCAACAGCAACAGAATAAAGGTCGCAAGTAAATGACAGCAAGCA
AGTACAAGCGACATCAACAAGCGACAAACGACAACAAGCAGCGCAAGAAA
CGCGACGGGTAGAAAAGGCGGGAAACAACGATCAACGACGATCTTCGCTC
TGCTGTGTGTGCGGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAG
AGAGAGAGAGAGCTGTGTGCAGAGTTGTAGAGCAGTAGCTTCGCGGCAGG
CGTAGATAGAAACGTAGTTGTAGAGCAGTTGTAGACGAAATATACCATAA
TAGCCATCTGGCAGCTTCACGCCGAGGTATCTTCACGACAGGTGCAGACC
ATACAGCAGCTGGTTCGCGACAAAGTGTAGACTTTGCTGCTGCTGCTGCT
GCTACTGCTGCTGCTGGACTAATTTTGCGGAAAGTGTGGACTCGTGAACC
GTTGAAGCCCATGCTGCACCAATTTTGCGGAAAGTGTAGACTCACAAACC
ACACAGCAGCCCAACTGCTACTGCTACAACAGCTTTCGGAAAGTGTAGAA
TAAGAAACCATGCCCGATGGATCTTACCAGAAATGTAGACTCGTGAACCA
TGAAGCATCCCAACTGCTACCCGCTCTCGTCTTGTTTATGCGACCTGTTG
TGTATTGTCACTTTTGTGAGGCTTGGTGCATGAGAAGACTGTGAGTCTAA
TCGCTCTCTCGCATGCACGCTACAGACACCCCCACCCCTCACTGCTGGAT
GTGGACAGTCCACGTCATCGATTCGGAATTATAGACTTGTCACACAGCTT
CTCTCGCATGCACTGCTTTCTGAATGTGGACAATCCAACATCCTCGTCTC
ACAGCTCTTCTCGTGTGCACGCTACAGACACAGACAGCGTGTTTACCCCA
ACCTCCTCGATTCGAAAGTATAGACTTGTCACACAGCTCTTCTCGCAGGC
ACGCTATACATTTCCCGCCCAATCCACCCGCCCAGACTCCCTAAATTCGT
GTGAAAAATTAGTTGCTGTGCGGAAACAATCGTCCGACCTGACGGTGGAA
TATAGCCCTGTGCTGGCTCAGCGAACCTACCCACCCAGACTCCCTAAATT
CGTGTGAAACATTAATTGCTGTTCGGGAACAATCGTCCGACCTGACGGTG
GAATATAGCCCTGTGCTGGCTCAGCGAACCTACTCAACCGGACTCTCTAA
AATCGTGTGAGAGTGAAGCAAGGATATACAGGGTCGACCCATATGCAAAA
AATCGAGTGATATCGATGTGGAATAAAGGCTGTGGCAGCCGAGGTACTAA
GTATCACAGCAGCCTTTATTCGTGCTGCCCGTCGGTCGATCTTTTACCGC
CAATCTTGGCTGCTGTGTTGTTTTGCGACTTTCCCGCCTTTTTTATGATG
GCAATTGTAACGAGAGAGAGAGAGCGCCACCCGCTCTCGTCTTGTTTGTG
CGACCTGTTGTGCATTGTCACATCTGTAAGGCTTGGTGCACGAGAAGACT
GGGAGTCTAATAGCTCTCTCGCATGCGCGCTACAGACACCGCACTGACAT
GCTGGATGTGGACAGTCCACGTCATCGATTCGGAATTATAGACTTATTTA
TCACACAGCTCCTCTCGCAGGGACTGCTTTCTGAATGTGGACAATCCAAC
ATCCTTCTCTCACAGCTCTTCTCGTGTGCATGCGTTGCTGTCTGGTTTAC
CCCAACCTCCTCGATTCGAAATTATAGACTTGTCACACAGCTCTTCTCGC
AGGCACGCTATACATTTCCCGCCCAATCCACCGGAAATATTGTTGCTGAT
TGATTGATGATTGGTAATTAAAGGCTCTCTCTCCTGGTACAGCAAGCCTA
CCCGCCCAGACTCCTTAAATTTGTGTGAAAAATTAATTGCTGTTCGGAAA
CAATCGTCCGACCTGACGGTGGAATATAGCCGGTGCTGGCTCAGCTAACC
TACCCACCCAGACTCCCTAAATTCGTGTGAAAAATTGATTGCTGTTCGGG
AATTATCGTTCGACCTGACGGTGGAATATAGCCCTGTCTGAGCGCTGACC
AACTGCAGCGGCCGTGCCGCGGAGCAAGGATATTTCCTGGTGTCATATGT
GAAAAATCGAGTAATCTGAGGTGTGCTGGCTCAGCGAACCTACTCAACCA
GACTCTCTAAAATCGTGTGAGAGTGAAGCAAGGATATACAGGGTCGACCC
ACATGCAAAAAATCGAGTGATATCGATGTGGAATAAAGGCTGTGGCAGCC
GAGGTACTAAGTATCACAGCAGCCTTTATTCGTGCTGCCCGTCGGTCGAT
CTTTTACCGCCAATCTTGGCTGCTGTGTTGTTTTGCGACTTTCCCGCCTT
TTTTATGATGGCAATTGTAACGAGAGAGAGAGAGCGCCACCCGCGCTCGT
CTTGTTTATGCGACCTGTTGTGTATTGTCACATCTGTGAGGCTTGGTGCA
CGAGAAGACTGGGGGTCTAATATCTACTGTATCTTCGTGATGTCAACTGT
GCAGAAAAAGGCGGCAGACCAGGCGGAGCGCGCGAAAGGAGAGAGCGAGA
GGGATGCACTGAAGCGTGATGTAGCTTTGCTGGAGGGTCGGTTTCGGGAG
GTTGAGGAGCGCAAACTACAAGCGGAGATACGCAGAACACCCCGGAGATT
ATGCAATGAACGGGAGGAAGTCGCTGTGGCTCGGGCGCTTTCGGTGAGTG
CTTTCGCTAAAGATGGAGAGGCGAGTGGTAGCTGTACCAGCAATATTAAC
AAAAAAACTGCACACAAACTTATGTTGCACTTGACTTGCTGCGTTTCTGA
ATCATACAGCCTGTGGATTTTCGGGAAGAGGCCATTTTTGACGATCTTGA
TGTGGACGGGAGACCCAGCCAAATCCACGGCAAAGGCACTTTCTCCAAGA
AGGGTGCTTCGGAGGGCGACGTCCTTCTTAGTGTTCTTATACCCAGCAAA
GCAGTAGAGAAAGGTTTTGCTTTTAGGGGAGGTGGATACGACTGCAATCA
GCATGTGATGCACAAAGATGGGTTAGGCGTGATGTTCATTGACCCGGCGA
CGCGAATGCGAGGCAATTTTGGGGCATGCAGAGAGGACTTCAAGCTTGGT
GTGCTTAGATTGCTCAATCATAGCGATGATCCAAATATAGCCGTCTCTAC
CCGCGAGGCAGCAACACCCGCTTGGTATGAGGCAGTTGGGGAACCGTTTC
CCAGGTGGTATGAGTGTAGGCTGGTGGCTAGTCGAAGGATCGGAGTAGAT
GAAGAAATGACGATACAGTATGCCGTTGCACCGAAGGGTGTCAAGGCGGC
AAAGAGAAAGCGTCGGAAGTAGATAATTTTTCACACAAATTTAGGGAGTG
TTGGTGGGTAGGTTGCCTGTACCAGAACAGCCTATAATCCACCGTCAGAA
AGGTCAATTATTCTCGAACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1626:19840..23711+

>mRNA_L-elsbetiae_contig1626.4279.1 ID=mRNA_L-elsbetiae_contig1626.4279.1|Name=mRNA_L-elsbetiae_contig1626.4279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:19840..23711+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCGGCGATCGAGTATGCCGAGGGTGTAACACCCGCAGTAGCCGA
CTTCATCATGGCACAGGCTGGAGCCAGCATCTCGGTCGATGAGGTACAAA
AAAAGCTGTTCGACCGAGTTGTTGTGGACGGAGACCTGAAAAGTCTCCCA
GCACCCAAGGAGTTTGACCCACGCTTCTGGCCGGGACTGCTTTCAGTTCT
ACAAGAGATCACCAGGTCTCCTTCTCCTGCTACAGAGGATGCTGGGAAGG
CACGGGGATTGCACAAGGAGGTCGTCGAGTTACGCAAGCTACACAGTAAG
AGGATGTCATGGCGCCGCTGGGATGCCAAAATGTCGCCGGCGATCGAGTA
TGCCGAGGGTGTAACACCCGCAGTAGCCGACTTCATCATGGCACAGGCTG
GAGCCAGCATCTCGGTCGATGAGGTACAAAAAAAGCTGTTCGACCGAGTT
GTTGTGGACGGAGACCTGAAAAGTCTCCCAGCACCCAAGGAGTTTGACCC
ACGCTTCTGGCCGGGACTGCTTTCAGTTCTACAAGAGATCACCAGGTCTC
CTTCTCCTGCTACAGAGGATGCTGGGAAGGCACGGGGATTGCACAAGGAG
GTCGTCGAGTTACGCAAGCTACACAGTAAGAGGATGTCATGGCGCCGCTG
GGATGCCAAAAAAAAGGCGGCAGACCAGGCGGAGCGCGCGAAAGGAGAGA
GCGAGAGGGATGCACTGAAGCGTGATGTAGCTTTGCTGGAGGGTCGGTTT
CGGGAGGTTGAGGAGCGCAAACTACAAGCGGAGATACGCAGAACACCCCG
GAGATTATGCAATGAACGGGAGGAAGTCGCTGTGGCTCGGGCGCTTTCGA
AAAAGGCGGCAGACCAGGCGGAGCGCGCGAAAGGAGAGAGCGAGAGGGAT
GCACTGAAGCGTGATGTAGCTTTGCTGGAGGGTCGGTTTCGGGAGGTTGA
GGAGCGCAAACTACAAGCGGAGATACGCAGAACACCCCGGAGATTATGCA
ATGAACGGGAGGAAGTCGCTGTGGCTCGGGCGCTTTCGCCTGTGGATTTT
CGGGAAGAGGCCATTTTTGACGATCTTGATGTGGACGGGAGACCCAGCCA
AATCCACGGCAAAGGCACTTTCTCCAAGAAGGGTGCTTCGGAGGGCGACG
TCCTTCTTAGTGTTCTTATACCCAGCAAAGCAGTAGAGAAAGGTTTTGCT
TTTAGGGGAGGTGGATACGACTGCAATCAGCATGTGATGCACAAAGATGG
GTTAGGCGTGATGTTCATTGACCCGGCGACGCGAATGCGAGGCAATTTTG
GGGCATGCAGAGAGGACTTCAAGCTTGGTGTGCTTAGATTGCTCAATCAT
AGCGATGATCCAAATATAGCCGTCTCTACCCGCGAGGCAGCAACACCCGC
TTGGTATGAGGCAGTTGGGGAACCGTTTCCCAGGTGGTATGAGTGTAGGC
TGGTGGCTAGTCGAAGGATCGGAGTAGATGAAGAAATGACGATACAGTAT
GCCGTTGCACCGAAGGGTGTCAAGGCGGCAAAGAGAAAGCGTCGGAAGTA
GCCTGTGGATTTTCGGGAAGAGGCCATTTTTGACGATCTTGATGTGGACG
GGAGACCCAGCCAAATCCACGGCAAAGGCACTTTCTCCAAGAAGGGTGCT
TCGGAGGGCGACGTCCTTCTTAGTGTTCTTATACCCAGCAAAGCAGTAGA
GAAAGGTTTTGCTTTTAGGGGAGGTGGATACGACTGCAATCAGCATGTGA
TGCACAAAGATGGGTTAGGCGTGATGTTCATTGACCCGGCGACGCGAATG
CGAGGCAATTTTGGGGCATGCAGAGAGGACTTCAAGCTTGGTGTGCTTAG
ATTGCTCAATCATAGCGATGATCCAAATATAGCCGTCTCTACCCGCGAGG
CAGCAACACCCGCTTGGTATGAGGCAGTTGGGGAACCGTTTCCCAGGTGG
TATGAGTGTAGGCTGGTGGCTAGTCGAAGGATCGGAGTAGATGAAGAAAT
GACGATACAGTATGCCGTTGCACCGAAGGGTGTCAAGGCGGCAAAGAGAA
AGCGTCGGAAGTAG
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