mRNA_L-elsbetiae_contig1626.4278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1626.4278.1
Unique NamemRNA_L-elsbetiae_contig1626.4278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5K1V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-19
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = -2 
Query:  776 GGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQ 973
            GGQE EWV RLGDDL+AFN+ DEKEG KWK SA+D E WY KVE GA W MR+W+R +AE S  RQ
Sbjct:   25 GGQESEWVSRLGDDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEEGAAWFMRKWHRQEAEASAKRQ 90
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5JAR2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.340e-19
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = -2 
Query:  746 EATENCPIG*GGGGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGAVMEDS 1027
            E + +  +G   GG +  GGQE +WV RLG+DL+AFN+ DEKEG  WK SA+D E WY KVE G  W MR+W+R +AE S  RQ  R A  E++
Sbjct:    9 ETSASTQLGAMAGGVEYRGGQESDWVSRLGEDLVAFNMGDEKEGVIWKESAKDPEVWYNKVEDGTAWFMRKWHRQEAEASAKRQRPREAEAENT 102
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5JV96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV96_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.550e-19
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = -2 
Query:  776 GGGGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQ 997
            GGGG +  GGQE +WV RLG+DL+AFN+ DEKEG KWK SA+D E WY KVE GA WLMR+W+R +A  S  RQ
Sbjct:   17 GGGGYR--GGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWLMRKWHRQEAGASAKRQ 88
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5KUC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.580e-19
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = -2 
Query:  788 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEES 991
            GG    GGQE +WV RLG+DL+AFN+RDEKEG KWK SA+D E WY KVE GA W MR+W+R +AE S
Sbjct:   17 GGVGYRGGQESDWVCRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEAS 84
[Close]
BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5L3I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.080e-19
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = -2 
Query:  761 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGA 991
            GG    GGQE +WV RLG+DL+AFN+ DEKEG +WK SA+D E WY KVE  A WLMR+W+R +AE S  RQ  R A
Sbjct:    3 GGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGEWKDSAKDPEVWYNKVEDVAAWLMRKWHRQEAEASAKRQRMRAA 79
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.620e-19
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = -2 
Query:  752 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGAVME 991
            GG    GGQE +WV RLG+DL+AFN+ DEKEG KWK SA++ E WY KVE GA W MR+W+R +AE S  RQ  R A +E
Sbjct:   98 GGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEVE 177
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5KHL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.070e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = -2 
Query:  752 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGAVME 991
            GG    GGQE +WV RLG+DL+AFN+ DEK+G KWKTSA+  E WY KVE G  WL+R+W+R +AE S+ RQ  R A  E
Sbjct:   19 GGVGYRGGQESDWVSRLGEDLVAFNMGDEKKGVKWKTSAKAPEVWYNKVEDGEAWLLRKWHRQEAEASKKRQRVREAEAE 98
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BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5L863_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L863_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-18
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = -2 
Query:  761 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGA 991
            GG    GGQE +WV RLG+DL+AFN+ DEKEG KWK SA+D E W  KVE GA W MRRW+R +AE S  RQ  R A
Sbjct:   17 GGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWCNKVEDGAAWFMRRWHRQEAEASAKRQRAREA 93
[Close]
BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5L747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L747_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-18
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = -2 
Query:  752 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGAVME 991
            GG    GGQE +WV RLG+DL+AFN+ DE EG KWK SA+D E WY KVE GA W MR+W+R +AE S  RQ  R A  E
Sbjct:   81 GGVGYRGGQESDWVSRLGEDLVAFNMEDETEGVKWKESAKDPEAWYNKVEDGAAWFMRKWHRQEAEASAKRQPAREAGAE 160
[Close]
BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Match: A0A6H5L6H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-18
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = -2 
Query:  752 GGKKSPGGQEHEWVRRLGDDLLAFNLRDEKEGEKWKTSAEDLEEWYTKVEGGAEWLMRRWNRAQAEESRDRQEKRGAVME 991
            GG    GGQE +WV RLG+DL+AFN+ DEKEG KWK SA+D E WY KVE GA W MR+W+  + E S  RQ  R A  E
Sbjct:   19 GGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHMQEKEASAKRQRAREAEAE 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1626.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1V8_9PHAE1.270e-1968.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR2_9PHAE1.340e-1951.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV96_9PHAE1.550e-1963.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUC6_9PHAE1.580e-1964.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I2_9PHAE4.080e-1959.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNV8_9PHAE8.620e-1958.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL4_9PHAE9.070e-1957.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L863_9PHAE1.100e-1861.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L747_9PHAE1.570e-1858.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6H8_9PHAE1.740e-1857.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1626contigL-elsbetiae_contig1626:18465..19561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1099
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.1341748-UTR-L-elsbetiae_contig1626:18464..189851622815671.1341748-UTR-L-elsbetiae_contig1626:18464..18985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 18465..18985 +
1691683027.9255126-UTR-L-elsbetiae_contig1626:18464..189851691683027.9255126-UTR-L-elsbetiae_contig1626:18464..18985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 18465..18985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.1445515-CDS-L-elsbetiae_contig1626:18985..195611622815671.1445515-CDS-L-elsbetiae_contig1626:18985..19561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 18986..19561 +
1691683027.9354556-CDS-L-elsbetiae_contig1626:18985..195611691683027.9354556-CDS-L-elsbetiae_contig1626:18985..19561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 18986..19561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1626.4278.1prot_L-elsbetiae_contig1626.4278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1626 18986..19561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1626.4278.1

>prot_L-elsbetiae_contig1626.4278.1 ID=prot_L-elsbetiae_contig1626.4278.1|Name=mRNA_L-elsbetiae_contig1626.4278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MVGAWQGSCRCTLGSQRTQSAICLATHSASHSRTSVKAVTLPPPPARVFS
RFLLALFSSGTTALLRSFRFFCGCVLSSITAPLFSWRSLDSSAWARFHLL
MSHSAPPSTLVYHSSKSSALVFHFSPSFSSLKLNAKRSSPNRRTHSCSCP
PGLFLPPPPHPIGQFSVASRRPCACACLMNSRKTRTFTYASG
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mRNA from alignment at L-elsbetiae_contig1626:18465..19561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1626.4278.1 ID=mRNA_L-elsbetiae_contig1626.4278.1|Name=mRNA_L-elsbetiae_contig1626.4278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1097bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:18465..19561+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCACAAAAACTAGGGTACCCGCTCTCATGTCAAACCACCAATTGCC
GCGCCCCGTTGGGTGCGCACTCTCTATGGTAAAAAAATTCGGCAGGAAAA
TAAAAATAAACACGCTGTACTGGTCGAAAGAGAAAGACGTTACCCCGCTC
CCCTACTATGCCGAGGGGCTCACTGCCGGGTTCGCGCCGGCCAGGCAAGC
AAAGACAAAAAAATAAAATAAAGAAATATGTAAACAATCACGGTGGACAG
AGCGGAAGCAGACACGATAAACCACCGGCGACCGCCACCGACAGGTAGGA
CAGTCGACGGTGGGCGGCACGCGCCGAAGGTGGGCCCCAGGGCTGGGCGT
GGTCGACCACTACAATCGCGCACAAACACGTCAGACAGGGAGGCCCACAG
GGAGCAGGCAAAGAAACAAACAAACGACGGCAAAGAAGCCGAACAACGGG
ACAAGGCAGGGACATAGGGTACCAGACGACAAGTGCGCACAAACAAAGCA
AGCAAACAAGTACCACACACAATGGTCGGCGCGTGGCAGGGTAGCTGCAG
GTGCACACTTGGGTCGCAACGTACTCAATCGGCCATATGTCTCGCTACGC
ACTCGGCCTCCCACTCTCGTACTTCAGTCAAGGCAGTCACGCTGCCTCCT
CCCCCCGCCCGCGTCTTTTCCCGCTTCCTTCTCGCTCTTTTCTCGTCTGG
TACCACTGCTCTGCTGCGCTCCTTCCGTTTTTTTTGTGGTTGCGTGCTGT
CCTCCATCACCGCCCCCCTTTTTTCCTGGCGGTCCCTGGACTCTTCTGCT
TGGGCGCGGTTCCACCTCCTCATGAGCCATTCCGCCCCCCCCTCGACCTT
GGTGTACCATTCCTCCAAGTCCTCAGCGCTGGTTTTCCACTTCTCTCCCT
CTTTCTCGTCCCTCAAGTTGAACGCCAAGAGGTCGTCGCCCAATCGACGC
ACCCACTCATGTTCCTGCCCCCCTGGGCTCTTCTTGCCCCCACCGCCTCA
CCCAATAGGACAGTTTTCAGTAGCCTCTCGTCGCCCATGCGCATGTGCGT
GTTTGATGAACTCACGAAAGACAAGGACTTTTACATATGCCTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1626:18465..19561+

>mRNA_L-elsbetiae_contig1626.4278.1 ID=mRNA_L-elsbetiae_contig1626.4278.1|Name=mRNA_L-elsbetiae_contig1626.4278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:18465..19561+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGGCGCGTGGCAGGGTAGCTGCAGGTGCACACTTGGGTCGCAACG
TACTCAATCGGCCATATGTCTCGCTACGCACTCGGCCTCCCACTCTCGTA
CTTCAGTCAAGGCAGTCACGCTGCCTCCTCCCCCCGCCCGCGTCTTTTCC
CGCTTCCTTCTCGCTCTTTTCTCGTCTGGTACCACTGCTCTGCTGCGCTC
CTTCCGTTTTTTTTGTGGTTGCGTGCTGTCCTCCATCACCGCCCCCCTTT
TTTCCTGGCGGTCCCTGGACTCTTCTGCTTGGGCGCGGTTCCACCTCCTC
ATGAGCCATTCCGCCCCCCCCTCGACCTTGGTGTACCATTCCTCCAAGTC
CTCAGCGCTGGTTTTCCACTTCTCTCCCTCTTTCTCGTCCCTCAAGTTGA
ACGCCAAGAGGTCGTCGCCCAATCGACGCACCCACTCATGTTCCTGCCCC
CCTGGGCTCTTCTTGCCCCCACCGCCTCACCCAATAGGACAGTTTTCAGT
AGCCTCTCGTCGCCCATGCGCATGTGCGTGTTTGATGAACTCACGAAAGA
CAAGGACTTTTACATATGCCTCTGGCATGGTCGGCGCGTGGCAGGGTAGC
TGCAGGTGCACACTTGGGTCGCAACGTACTCAATCGGCCATATGTCTCGC
TACGCACTCGGCCTCCCACTCTCGTACTTCAGTCAAGGCAGTCACGCTGC
CTCCTCCCCCCGCCCGCGTCTTTTCCCGCTTCCTTCTCGCTCTTTTCTCG
TCTGGTACCACTGCTCTGCTGCGCTCCTTCCGTTTTTTTTGTGGTTGCGT
GCTGTCCTCCATCACCGCCCCCCTTTTTTCCTGGCGGTCCCTGGACTCTT
CTGCTTGGGCGCGGTTCCACCTCCTCATGAGCCATTCCGCCCCCCCCTCG
ACCTTGGTGTACCATTCCTCCAAGTCCTCAGCGCTGGTTTTCCACTTCTC
TCCCTCTTTCTCGTCCCTCAAGTTGAACGCCAAGAGGTCGTCGCCCAATC
GACGCACCCACTCATGTTCCTGCCCCCCTGGGCTCTTCTTGCCCCCACCG
CCTCACCCAATAGGACAGTTTTCAGTAGCCTCTCGTCGCCCATGCGCATG
TGCGTGTTTGATGAACTCACGAAAGACAAGGACTTTTACATATGCCTCTG
GC
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