mRNA_L-elsbetiae_contig1626.4275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1626.4275.1
Unique NamemRNA_L-elsbetiae_contig1626.4275.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Match: Q8QNP7_ESV1K (EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP7_ESV1K)

HSP 1 Score: 294 bits (752), Expect = 5.030e-97
Identity = 145/195 (74.36%), Postives = 163/195 (83.59%), Query Frame = 1 
Query:    1 MPLLIPVAKDKKTGETVTPTCSKDDGPFTCLGCSKLLVLRQGEKNRWHFAHHSKDNDECSAGGETYIHLAAKLLLVSYITRFEFATKCDRRRHDHEKVYHGCTALQEQRYDGVHSADVGVFRDGNLTAIVEVMATHKTEGESLASRISCVGEDNVWEVEAMGVLEQQKRVTLTTDIIQLPSLL*VNRLCRMCTGE 585
            M LLIPVAK+K TGETVTPTC+K+DGPF CLGC+K LVLRQG+KN+WHFAHHS ++DECSAGGETYIHLAAKLLLV+YITRFEFA+KC R RHDHEK Y GCTA+QE RYDGVHSADV V RDGNL AI+EVMATHKTEGE LASRI  VG DNVW V+AM V  Q+KR++LTTD I + SLL +   C  C  E
Sbjct:    1 MSLLIPVAKNK-TGETVTPTCNKEDGPFACLGCAKPLVLRQGQKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGNLEAIIEVMATHKTEGEPLASRIERVGADNVWGVDAMDVWRQRKRLSLTTDTIHVASLLKLED-CAECAQE 193
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BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.080e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 MPLLIPVAKDKKTGETVTPTCSKDDGPFTCLGCSKLLVLRQGEKNRWHFAHHSKDNDECSAGGETYIHLAAKLLLVSYITRFEFATKCDRRRHDHEKVYHGCTALQEQRYDGV--HSADVGVFRDGNLTAIVEVMATHKTEGESLASRISCVGEDNVWEVEAMGVLEQQ 501
            MPL IPVA+  ++G+ V P+CSK +G F CL  S+ L L+QG+   +HFAH    +  CS GGE+ +H AAKLL+  Y +R  F   C    H   + Y  C A QE RYD    ++ADV +F++G ++AIVEV A+H T G+SL SR +CVG +NVWE+ A+ +L +Q
Sbjct:    1 MPLHIPVAQ-ARSGKLVVPSCSKAEGSFRCLEYSQNLALKQGKIKVFHFAHRHL-SPGCSGGGESALHKAAKLLVEKYCSRLVFIGVCIAGEHSIARQYVNCEAKQEYRYDTTNNYAADVAIFQNGVISAIVEVCASHATTGDSLESRTACVGVNNVWEISAVEILSRQ 167
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BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Match: A0A6H5JQD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.610e-30
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:   13 IPVAKDKKTGETVTPTCSKDDGPFTCLGCSKLLVLRQGEKNRWHFAHHSKDNDECSAGGETYIH-LAAKLLLVSYITRFEFATKCDRRRHDHEKVYHGCTALQEQRYDGV--HSADVGVFRDGNLTAIVEVMATHKTEGESLASRISCVGEDNVWEVEAMGVLEQQKRVTLTTDIIQLPSLL 549
            IP+ + + +G+ V  +CSK +GPFTCLGC   LVL QG+ N +HFAH  + +  CS  GE+  H  AAKLL+  Y +R                +Y  C A QE RY     +SADV +F++ +   IVE+   H T G++L  R +CVG ++VWE+ A   L QQ  +  T + +++PSLL
Sbjct:   21 IPIVQTE-SGKLVVSSCSKAEGPFTCLGCGGGLVLLQGKVNVYHFAH-CQHSLGCSGWGESAQHNKAAKLLVEKYCSR----------------LYTDCDAKQEYRYHNNINYSADVAIFQNHSFVPIVEISVAHVTTGDALERRTACVGANSVWEIAAGENLSQQTELFTTQNTVEIPSLL 184
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BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Match: A0A6B1BS80_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1BS80_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.100e-6
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   40 GETVTPTCSK-DDGP---FTCLGCSKLLVLRQGEKNRWHFAHHSKDNDECSAGGETYIHLAAK 216
            GE VTP  ++ + G      C+GC + L+LR+GEK RWHFAH +K     S GGETYIH   K
Sbjct:   13 GELVTPDDTRLERGKGCCCVCIGCGEPLILRRGEKKRWHFAHRAKT----SCGGETYIHKVVK 71
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BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Match: A0A6B0Z2W0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0Z2W0_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   88 CLGCSKLLVLRQGEKNRWHFAHHSKDNDECSAGGETYIHLAAK 216
            C+GC + LVLR+GEK RWHFAH +    E S GGETYIH   K
Sbjct:   33 CIGCDEPLVLRRGEKKRWHFAHRA----ETSCGGETYIHKVVK 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1626.4275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNP7_ESV1K5.030e-9774.36EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7G1E0_ECTSI1.080e-3546.15EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JQD6_9PHAE3.610e-3039.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1BS80_9BACT2.100e-649.21Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6B0Z2W0_9CHLR3.780e-660.47Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1626contigL-elsbetiae_contig1626:2244..3028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size785
Cds size552
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.184214-CDS-L-elsbetiae_contig1626:2243..27951622815671.184214-CDS-L-elsbetiae_contig1626:2243..2795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 2244..2795 +
1691683027.944449-CDS-L-elsbetiae_contig1626:2243..27951691683027.944449-CDS-L-elsbetiae_contig1626:2243..2795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1626 2244..2795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.1960375-UTR-L-elsbetiae_contig1626:2795..30281622815671.1960375-UTR-L-elsbetiae_contig1626:2795..3028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 2796..3028 +
1691683027.9538498-UTR-L-elsbetiae_contig1626:2795..30281691683027.9538498-UTR-L-elsbetiae_contig1626:2795..3028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1626 2796..3028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1626.4275.1prot_L-elsbetiae_contig1626.4275.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1626 2244..2795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1626.4275.1

>prot_L-elsbetiae_contig1626.4275.1 ID=prot_L-elsbetiae_contig1626.4275.1|Name=mRNA_L-elsbetiae_contig1626.4275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MPLLIPVAKDKKTGETVTPTCSKDDGPFTCLGCSKLLVLRQGEKNRWHFA
HHSKDNDECSAGGETYIHLAAKLLLVSYITRFEFATKCDRRRHDHEKVYH
GCTALQEQRYDGVHSADVGVFRDGNLTAIVEVMATHKTEGESLASRISCV
GEDNVWEVEAMGVLEQQKRVTLTTDIIQLPSLL*
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mRNA from alignment at L-elsbetiae_contig1626:2244..3028+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1626.4275.1 ID=mRNA_L-elsbetiae_contig1626.4275.1|Name=mRNA_L-elsbetiae_contig1626.4275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=785bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:2244..3028+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACTTCTTATCCCTGTCGCAAAGGACAAGAAGACAGGTGAGACGGT
GACGCCGACCTGTTCAAAGGATGACGGCCCGTTCACGTGTCTTGGTTGTT
CGAAGCTGCTTGTTTTGAGGCAGGGTGAAAAGAACCGGTGGCATTTTGCG
CACCATTCCAAGGACAATGACGAGTGTTCTGCTGGTGGGGAGACTTACAT
CCACTTGGCAGCCAAGCTCCTGTTGGTCAGCTACATCACTAGGTTCGAGT
TCGCCACCAAGTGTGATCGCCGGCGACATGATCACGAAAAGGTCTACCAC
GGATGCACGGCGCTACAGGAGCAGCGGTACGACGGCGTACACTCCGCCGA
TGTGGGCGTGTTCCGCGACGGGAACCTGACGGCTATCGTAGAGGTCATGG
CGACACACAAGACCGAAGGAGAATCGTTGGCTTCCAGGATTTCTTGTGTG
GGGGAAGACAATGTGTGGGAGGTGGAAGCGATGGGCGTTTTAGAACAGCA
GAAACGGGTGACATTGACGACCGACATCATCCAGTTACCTAGTTTACTTT
AGGTTAACAGACTGTGCCGAATGTGCACTGGAGAGTAGGCAGGAGCACGA
CCGACGGGAAAAAAAGATGGCGACTGAGAAGCAAGAGTCCGAGGAATTCA
GTCGACAGTTCAACGAGCGAAATAACACCACCGTGGTCATTATTGACGAA
AACACCCTCGGGCGCAACGGCGTGCTGATGAAAAAGTTCTTCATAAATCC
GGCGATAGCTTGATCGTAGCTACGGGTGGGTGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1626:2244..3028+

>mRNA_L-elsbetiae_contig1626.4275.1 ID=mRNA_L-elsbetiae_contig1626.4275.1|Name=mRNA_L-elsbetiae_contig1626.4275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig1626:2244..3028+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACTTCTTATCCCTGTCGCAAAGGACAAGAAGACAGGTGAGACGGT
GACGCCGACCTGTTCAAAGGATGACGGCCCGTTCACGTGTCTTGGTTGTT
CGAAGCTGCTTGTTTTGAGGCAGGGTGAAAAGAACCGGTGGCATTTTGCG
CACCATTCCAAGGACAATGACGAGTGTTCTGCTGGTGGGGAGACTTACAT
CCACTTGGCAGCCAAGCTCCTGTTGGTCAGCTACATCACTAGGTTCGAGT
TCGCCACCAAGTGTGATCGCCGGCGACATGATCACGAAAAGGTCTACCAC
GGATGCACGGCGCTACAGGAGCAGCGGTACGACGGCGTACACTCCGCCGA
TGTGGGCGTGTTCCGCGACGGGAACCTGACGGCTATCGTAGAGGTCATGG
CGACACACAAGACCGAAGGAGAATCGTTGGCTTCCAGGATTTCTTGTGTG
GGGGAAGACAATGTGTGGGAGGTGGAAGCGATGGGCGTTTTAGAACAGCA
GAAACGGGTGACATTGACGACCGACATCATCCAGTTACCTAGTTTACTTT
AGATGCCACTTCTTATCCCTGTCGCAAAGGACAAGAAGACAGGTGAGACG
GTGACGCCGACCTGTTCAAAGGATGACGGCCCGTTCACGTGTCTTGGTTG
TTCGAAGCTGCTTGTTTTGAGGCAGGGTGAAAAGAACCGGTGGCATTTTG
CGCACCATTCCAAGGACAATGACGAGTGTTCTGCTGGTGGGGAGACTTAC
ATCCACTTGGCAGCCAAGCTCCTGTTGGTCAGCTACATCACTAGGTTCGA
GTTCGCCACCAAGTGTGATCGCCGGCGACATGATCACGAAAAGGTCTACC
ACGGATGCACGGCGCTACAGGAGCAGCGGTACGACGGCGTACACTCCGCC
GATGTGGGCGTGTTCCGCGACGGGAACCTGACGGCTATCGTAGAGGTCAT
GGCGACACACAAGACCGAAGGAGAATCGTTGGCTTCCAGGATTTCTTGTG
TGGGGGAAGACAATGTGTGGGAGGTGGAAGCGATGGGCGTTTTAGAACAG
CAGAAACGGGTGACATTGACGACCGACATCATCCAGTTACCTAGTTTACT
TTAG
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