mRNA_L-elsbetiae_contig16251.4274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16251.4274.1
Unique NamemRNA_L-elsbetiae_contig16251.4274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A6H5KTD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.750e-29
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            ++GQHKSLVGPFQE+TK N AMQQKQMDAIH AFK HV R RP+VD+EAVGTGE+WLGQ+AVE+ LAD+V
Sbjct:  289 TSGQHKSLVGPFQEVTKENKAMQQKQMDAIHTAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVEMHLADKV 358
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: D7G353_ECTSI (Putative periplasmic protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G353_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 9.970e-29
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            ++GQHKSLVGPFQE+TK N AMQQKQMDAIH AFK HV R RP+VD+EAVGTGE+WLGQ+AV++RLAD+V
Sbjct:  661 TSGQHKSLVGPFQEVTKENKAMQQKQMDAIHSAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVDMRLADKV 730
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A4Q6BI38_9PROT (Protease SohB (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6BI38_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-12
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            +AG++K  V  F EIT       ++Q++A H  FK  VK  RP VD++ V TGE W GQQA+EL+L DE+
Sbjct:    4 TAGEYKRTVSIFGEITPKGEEKFREQLEATHQLFKGWVKANRPVVDIDRVATGEYWFGQQALELKLVDEL 73
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A2G2JIC9_9GAMM (Protease SohB n=1 Tax=Oceanobacter sp. TaxID=2030817 RepID=A0A2G2JIC9_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 1.240e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            +AG++K  V  F E T       Q  ++  H  FKNHVK  RP VD+EAV TG++W GQQA++ +L DEV
Sbjct:  228 TAGEYKRTVTMFGENTDSAREKFQADLEDTHELFKNHVKHYRPRVDIEAVATGDIWYGQQALDQKLIDEV 297
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: UPI00083ABF47 (protease SohB n=1 Tax=Pseudohongiella nitratireducens TaxID=1768907 RepID=UPI00083ABF47)

HSP 1 Score: 67.4 bits (163), Expect = 2.310e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 LSAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            ++AG++K  + PF EIT+      Q+ +  +H  FK+ VKR RP VD+E V TGE W+G QA E +L D+V
Sbjct:  224 ITAGEYKRTLTPFTEITEKGRDKVQQDIQEMHELFKDWVKRHRPVVDIEKVATGETWVGVQAYERQLVDQV 294
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A1N7Q0L5_9GAMM (Inner membrane peptidase. Serine peptidase. MEROPS family S49 n=5 Tax=Oceanospirillales TaxID=135619 RepID=A0A1N7Q0L5_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 4.410e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            +AG++K  V  F E T       Q  ++  HV FK HVK+ RP VD++AV TG++W GQQA++ +L DEV
Sbjct:  227 TAGEYKRTVTMFGENTDKAREKFQSDLNDTHVLFKQHVKQFRPRVDIDAVATGDIWYGQQALDQKLIDEV 296
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BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A4P2VIB1_9PROT (Protease n=1 Tax=Fluviispira sanaruensis TaxID=2493639 RepID=A0A4P2VIB1_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 LSAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            ++AG++K  + P  EIT+   A  Q+Q++  H  FK+H+K+ R  +D+ AV TGE W G +A+EL L DE+
Sbjct:  222 MTAGEYKRTLTPLGEITEKGKAKFQEQLEDTHELFKDHIKKYRENLDLNAVATGEYWYGLKALELNLVDEI 292
[Close]
BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A1Y6EKE2_9GAMM (Inner membrane peptidase. Serine peptidase. MEROPS family S49 n=1 Tax=Pseudidiomarina planktonica TaxID=1323738 RepID=A0A1Y6EKE2_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 LSAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            L+AG++K  +  F E T+      +  ++ IH  FK+ VK  RP VD++ V TGE+W GQ+A+EL+L DEV
Sbjct:  215 LTAGEYKRTLTLFGENTEQGRQKFKDDLENIHKQFKSFVKEHRPEVDIDKVATGEIWTGQEAIELKLVDEV 285
[Close]
BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: UPI00199C0B13 (Protease SohB n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI00199C0B13)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-10
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    4 SAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            +AG++K  V  F EIT       ++Q++A H  FK  V   RP VD++ V TGE W GQQA+EL+L DE+
Sbjct:  211 TAGEYKRTVSIFGEITAKGEEKFKEQLEATHQLFKGWVHANRPIVDIDRVATGEYWYGQQALELKLVDEI 280
[Close]
BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Match: A0A2E4YDR1_9GAMM (Protease SohB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4YDR1_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 1.590e-10
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LSAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEAVGTGEVWLGQQAVELRLADEV 213
            +SAG++K  +  F EITK      ++ ++ IH  FK+ VK  RP VD++ + TGE WLG QA+E  + DE+
Sbjct:  233 ISAGEYKRTLTTFGEITKKGKDKVREDVETIHGIFKSWVKEHRPNVDIDNIATGETWLGSQAIERSMVDEI 303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16251.4274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD1_9PHAE5.750e-2977.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G353_ECTSI9.970e-2977.14Putative periplasmic protease n=1 Tax=Ectocarpus s... [more]
A0A4Q6BI38_9PROT1.500e-1247.14Protease SohB (Fragment) n=1 Tax=Proteobacteria ba... [more]
A0A2G2JIC9_9GAMM1.240e-1147.14Protease SohB n=1 Tax=Oceanobacter sp. TaxID=20308... [more]
UPI00083ABF472.310e-1145.07protease SohB n=1 Tax=Pseudohongiella nitratireduc... [more]
A0A1N7Q0L5_9GAMM4.410e-1145.71Inner membrane peptidase. Serine peptidase. MEROPS... [more]
A0A4P2VIB1_9PROT6.000e-1142.25Protease n=1 Tax=Fluviispira sanaruensis TaxID=249... [more]
A0A1Y6EKE2_9GAMM1.490e-1043.66Inner membrane peptidase. Serine peptidase. MEROPS... [more]
UPI00199C0B131.490e-1045.71Protease SohB n=1 Tax=Bdellovibrionaceae bacterium... [more]
A0A2E4YDR1_9GAMM1.590e-1042.25Protease SohB n=1 Tax=Gammaproteobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16251contigL-elsbetiae_contig16251:637..2521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7G353
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase family S49 N-terminal
EggNOG OGs2R7CR@2759,COG0616@1
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPeptidase S49, N-terminal proteobacteria
Ec32 orthologEc-03_004530.1
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.091612-CDS-L-elsbetiae_contig16251:636..7581622815671.091612-CDS-L-elsbetiae_contig16251:636..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16251 637..758 +
1691683027.8855133-CDS-L-elsbetiae_contig16251:636..7581691683027.8855133-CDS-L-elsbetiae_contig16251:636..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16251 637..758 +
1622815671.1020172-CDS-L-elsbetiae_contig16251:2403..25211622815671.1020172-CDS-L-elsbetiae_contig16251:2403..2521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16251 2404..2521 +
1691683027.907456-CDS-L-elsbetiae_contig16251:2403..25211691683027.907456-CDS-L-elsbetiae_contig16251:2403..2521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16251 2404..2521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16251.4274.1prot_L-elsbetiae_contig16251.4274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16251 637..2521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16251.4274.1

>prot_L-elsbetiae_contig16251.4274.1 ID=prot_L-elsbetiae_contig16251.4274.1|Name=mRNA_L-elsbetiae_contig16251.4274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
LSAGQHKSLVGPFQEITKGNLAMQQKQMDAIHVAFKNHVKRCRPAVDVEA
VGTGEVWLGQQAVELRLADEVCACVCVSS*
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mRNA from alignment at L-elsbetiae_contig16251:637..2521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16251.4274.1 ID=mRNA_L-elsbetiae_contig16251.4274.1|Name=mRNA_L-elsbetiae_contig16251.4274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1885bp|location=Sequence derived from alignment at L-elsbetiae_contig16251:637..2521+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTGCAGGCCAACACAAGTCGCTGGTGGGTCCGTTCCAAGAAATCAC
GAAAGGAAATCTGGCTATGCAGCAGAAGCAGATGGATGCCATCCATGTCG
CCTTCAAGAACCACGTAAAGCGGTGAGAGGACCCTGTGATTGTGTTCCTT
TAGGGGGGGGGGGGGTCACATTGTCGTCGCTGATGTCTGATGTTTGGTTC
TGGTTTTGCTTTCTCGGAGACAGCGCTGGCCGGCCAACACAACACCCAGA
AGACAAAACAGGAAGAGGGTTGCCGACTTCGTCCTCTCGGAAGCCTCTCG
CTGCCATCGCGCAGCGGGACGCTGTGTGTTGTTGTTGCTGGCTTGGAACG
GTTGATACAAGTACGCTAATTTCTGCCGGGGCTTTTGGCGTCTGCGGCGG
TTGTTTCGGCACGCGGGGTGGGTATGTAGAGGTACCCAAAGGTTTTGGTT
CGGGGATACGAGGGTTTTGGTTTTAGGAATGTCGTCAGGCTTTGCACTGC
GCACCCAAACTTCCCAAGATTCCCGCTCTCAGCTGAATTAAGCGGTTACG
AAACATACGCGCGCGGCAATGATGCTGTTCGCGTCGCGCTTTTCCCTAGG
CCCCCTTCCGTAGAGAAATTAACTCTTACATATATAGGAAGTAATAACAG
AGACAGGGGTCCCGTAACCCTAACCCTAACCCAAAACACCGATCCTCTTT
GACGGTTCCTATAAGCTTCCTGCGACAGAGCCCCCAATCCACCCGCGTTG
CACGGGGCTCCGCGCAATAAAAAATGGTCACCGGAGTCCACGCAGGCGGG
AAAAACTATCATTCAGCCGCCAGCCTTTTTTTTGTCGCTGAGCTCAACCG
AGTCACAACCTTTCAGCACAACCACACTCCTTACACAGGTCGCAGCTTGC
TCTGAAATGTTCAGGGGGTCTCGTATATGTACGTGTCCTTTTCTACGTCC
GCAAGTAGTTTGCAAGCCTTTGTTTTGTCCTGAGCTCGAGGAATGCTCGA
CTGCAAGAAGCCAGTTTGCTGCTGCTTTTTTTGCCCTTCAGCAGCAAACC
TCACGCGGCTGTCGGCCGTCAAAGGAGTTCACGAAACCGCTCGGTGTTTT
CGGTACACACAGTGGAGGCACCCTGGGTATAGAGTCATTTCAAGGGTGGA
GCATTTTTGGATCCCAGGCATGATAGCCACATCAGCGAACATCCAAAGTA
ACCTCTCTTCACAGAAGGGAACATAATCACGCACCATGCATCTACCTCCA
ACGATGTTGATTTTTTTCCCCAAAAAAATTCCCCGATTTGAACCTTTATC
GCTGTGTCGTCGGCCGAAAACGTTCCCCAAAAAGCTTCACGGTGGGACCA
GGCTGTAGAGGAATCCACATAGATTCCACAGAAGGGTGAAGGAATTTTGG
ATCTTAACTACAGCCGGAGCCATCACGAAGTGACTGCCCAGCCCTATGGC
GAAAGCGGGCCAGCGGGGCCCCCGAAATTCCGGCGCTCGTGATTTTTTTT
TCCAAAAAGCGCGACACGGAGCCCCCTTCATCCCGGGTGCCAATCCTCAA
AAAGAGCTGTCGGGGCAGCCCGGGGGGGGTATTTATCTAGGAAATAGAGT
GGAAACTCCCCCACAGCCACTTTTTCGAGTTGGGGGCCCTGCTGCTGGAA
GCCCTTACGTGCTTTGTTTATCCCATATGTTACCTTTGAGACAAACTCTG
AGAAGGGTACTGATTTACCGCGCCGCTATTTTCATTCCCTCCATATTGTA
CCTCCCGTGGACATCAGGTGTAGGCCTGCGGTGGACGTGGAGGCGGTGGG
CACCGGGGAGGTCTGGCTCGGACAACAGGCCGTCGAGCTCCGCCTTGCGG
ATGAGGTGTGTGCGTGTGTGTGTGTGTCAAGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16251:637..2521+

>mRNA_L-elsbetiae_contig16251.4274.1 ID=mRNA_L-elsbetiae_contig16251.4274.1|Name=mRNA_L-elsbetiae_contig16251.4274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig16251:637..2521+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTGCAGGCCAACACAAGTCGCTGGTGGGTCCGTTCCAAGAAATCAC
GAAAGGAAATCTGGCTATGCAGCAGAAGCAGATGGATGCCATCCATGTCG
CCTTCAAGAACCACGTAAAGCGCTCTCTGCAGGCCAACACAAGTCGCTGG
TGGGTCCGTTCCAAGAAATCACGAAAGGAAATCTGGCTATGCAGCAGAAG
CAGATGGATGCCATCCATGTCGCCTTCAAGAACCACGTAAAGCGGTGTAG
GCCTGCGGTGGACGTGGAGGCGGTGGGCACCGGGGAGGTCTGGCTCGGAC
AACAGGCCGTCGAGCTCCGCCTTGCGGATGAGGTGTGTGCGTGTGTGTGT
GTGTCAAGCTAAGTGTAGGCCTGCGGTGGACGTGGAGGCGGTGGGCACCG
GGGAGGTCTGGCTCGGACAACAGGCCGTCGAGCTCCGCCTTGCGGATGAG
GTGTGTGCGTGTGTGTGTGTGTCAAGCTAA
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