mRNA_L-elsbetiae_contig16250.4273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16250.4273.1
Unique NamemRNA_L-elsbetiae_contig16250.4273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.710e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVR 138
            ILL GLQLVPEALSEGLD PV+VKWGHVGLFQLSVPW+KLGSKPVR
Sbjct:   71 ILLTGLQLVPEALSEGLDIPVEVKWGHVGLFQLSVPWNKLGSKPVR 116
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.980e-20
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPV 135
            ILL+GLQLVPEALSEGLD PV+VKWGHVGLFQLSVPW+KLGSKPV
Sbjct:   72 ILLKGLQLVPEALSEGLDIPVEVKWGHVGLFQLSVPWNKLGSKPV 116
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPV 135
            I L  L+L PEAL+EG  + +++KWG+VG F LSVPW+ LG+KPV
Sbjct:   36 IELHNLELNPEALNEGYSSALEIKWGYVGHFHLSVPWNALGTKPV 80
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A421JMW0_9ASCO (Vacuolar protein sorting-associated protein n=1 Tax=Spathaspora sp. JA1 TaxID=2028339 RepID=A0A421JMW0_9ASCO)

HSP 1 Score: 50.4 bits (119), Expect = 1.220e-5
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGDTRY 159
            + L  L+L  E+L +    P+DVK+GH+G+  L +PWS L SKPVR + +  Y
Sbjct:   35 VKLTDLRLKKESLDK-FKLPIDVKFGHLGVLTLQIPWSNLKSKPVRIIIEDLY 86
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: G3AE43_SPAPN (Vacuolar protein sorting-associated protein n=1 Tax=Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) TaxID=619300 RepID=G3AE43_SPAPN)

HSP 1 Score: 50.4 bits (119), Expect = 1.220e-5
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGDTRY 159
            + L  L+L  E+L +    P+DVK+GH+G+  L +PWS L SKPVR + +  Y
Sbjct:   35 VKLTDLRLKKESLDK-FKLPIDVKFGHLGVLTLQIPWSNLKSKPVRIIIEDLY 86
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A8J6CHM4_DIALT (Peroxin/Ferlin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHM4_DIALT)

HSP 1 Score: 50.1 bits (118), Expect = 1.680e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTV 144
            I+L  L+L  EAL E L  PV+++ G +G  +L VPWSKLGS+P+R +
Sbjct:   35 IVLESLELKREALFE-LGLPVNIEAGFIGRVELQVPWSKLGSEPIRVL 81
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A7S2WKN9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WKN9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.290e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    7 LRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGDTRY 159
            L GL+L  E L + L  P+ ++ GH+  F +SVPW+KLGS+PVR   D  Y
Sbjct:   37 LEGLELKKEVL-DSLRLPLQIECGHIHKFSVSVPWTKLGSEPVRVNIDGVY 86
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: A0A3D8R395_9HELO (Vacuolar protein sorting-associated protein n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8R395_9HELO)

HSP 1 Score: 49.3 bits (116), Expect = 3.140e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGDTRY 159
            + LR L+L  EAL + L  P++V+ GH+G   LS+PWS+LGS PV+   +  Y
Sbjct:   35 VKLRNLELRREALDQ-LKLPMNVEEGHLGQLTLSIPWSRLGSAPVKVFIEDVY 86
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: R7QRK6_CHOCR (UBA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRK6_CHOCR)

HSP 1 Score: 49.3 bits (116), Expect = 3.140e-5
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    7 LRGLQLVPEALSE-----GLDAPVDVKWGHVGLFQLSVPWSKLGSKPVR 138
            LRG+ L PEAL+      G+D PV V+ G +GL +L VPW  +GS PV+
Sbjct:   37 LRGVALRPEALAVLFETLGMDLPVTVEAGFIGLLRLQVPWKAIGSTPVQ 85
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BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Match: G8ZYR9_TORDC (Vacuolar protein sorting-associated protein n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZYR9_TORDC)

HSP 1 Score: 48.9 bits (115), Expect = 4.290e-5
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGDTRY 159
            + LR L+L  + L +GL+ PVDVK+G +G   L+VPWS L +KPV+ V +  Y
Sbjct:   35 VKLRNLKLRKDCL-DGLNLPVDVKFGILGELVLNVPWSSLKNKPVKIVIEDCY 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16250.4273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K6C3_9PHAE3.710e-2091.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF5_ECTSI6.980e-2091.11FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C849_9STRA1.400e-957.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A421JMW0_9ASCO1.220e-543.40Vacuolar protein sorting-associated protein n=1 Ta... [more]
G3AE43_SPAPN1.220e-543.40Vacuolar protein sorting-associated protein n=1 Ta... [more]
A0A8J6CHM4_DIALT1.680e-550.00Peroxin/Ferlin domain-containing protein n=1 Tax=D... [more]
A0A7S2WKN9_9STRA2.290e-547.06Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A3D8R395_9HELO3.140e-545.28Vacuolar protein sorting-associated protein n=2 Ta... [more]
R7QRK6_CHOCR3.140e-548.98UBA domain-containing protein n=1 Tax=Chondrus cri... [more]
G8ZYR9_TORDC4.290e-547.17Vacuolar protein sorting-associated protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16250contigL-elsbetiae_contig16250:839..1021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.0554483-CDS-L-elsbetiae_contig16250:838..10211622815671.0554483-CDS-L-elsbetiae_contig16250:838..1021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16250 839..1021 +
1691683027.8656235-CDS-L-elsbetiae_contig16250:838..10211691683027.8656235-CDS-L-elsbetiae_contig16250:838..1021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16250 839..1021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16250.4273.1prot_L-elsbetiae_contig16250.4273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16250 839..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16250.4273.1

>prot_L-elsbetiae_contig16250.4273.1 ID=prot_L-elsbetiae_contig16250.4273.1|Name=mRNA_L-elsbetiae_contig16250.4273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
ILLRGLQLVPEALSEGLDAPVDVKWGHVGLFQLSVPWSKLGSKPVRTVGD
TRYHTPWTEL*
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mRNA from alignment at L-elsbetiae_contig16250:839..1021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16250.4273.1 ID=mRNA_L-elsbetiae_contig16250.4273.1|Name=mRNA_L-elsbetiae_contig16250.4273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig16250:839..1021+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTACTTCGAGGCCTGCAGCTCGTGCCGGAGGCCCTCTCGGAGGGTCT
GGACGCTCCCGTGGATGTCAAGTGGGGGCACGTAGGATTATTCCAGCTCA
GCGTGCCTTGGAGCAAGCTCGGGTCGAAGCCGGTGCGTACCGTAGGTGAC
ACAAGATATCACACCCCCTGGACCGAACTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16250:839..1021+

>mRNA_L-elsbetiae_contig16250.4273.1 ID=mRNA_L-elsbetiae_contig16250.4273.1|Name=mRNA_L-elsbetiae_contig16250.4273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig16250:839..1021+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTACTTCGAGGCCTGCAGCTCGTGCCGGAGGCCCTCTCGGAGGGTCT
GGACGCTCCCGTGGATGTCAAGTGGGGGCACGTAGGATTATTCCAGCTCA
GCGTGCCTTGGAGCAAGCTCGGGTCGAAGCCGGTGCGTACCGTAGGTGAC
ACAAGATATCACACCCCCTGGACCGAACTTTAGATCCTACTTCGAGGCCT
GCAGCTCGTGCCGGAGGCCCTCTCGGAGGGTCTGGACGCTCCCGTGGATG
TCAAGTGGGGGCACGTAGGATTATTCCAGCTCAGCGTGCCTTGGAGCAAG
CTCGGGTCGAAGCCGGTGCGTACCGTAGGTGACACAAGATATCACACCCC
CTGGACCGAACTTTAG
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