mRNA_L-elsbetiae_contig1625.4272.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1625.4272.1
Unique NamemRNA_L-elsbetiae_contig1625.4272.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1625.4272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1625contigL-elsbetiae_contig1625:23351..24808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1398
Cds size1398
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.9976084-CDS-L-elsbetiae_contig1625:23350..236341622815670.9976084-CDS-L-elsbetiae_contig1625:23350..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 23351..23634 -
1691683027.8426716-CDS-L-elsbetiae_contig1625:23350..236341691683027.8426716-CDS-L-elsbetiae_contig1625:23350..23634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 23351..23634 -
1622815671.0107656-CDS-L-elsbetiae_contig1625:23694..248081622815671.0107656-CDS-L-elsbetiae_contig1625:23694..24808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 23695..24808 -
1691683027.855936-CDS-L-elsbetiae_contig1625:23694..248081691683027.855936-CDS-L-elsbetiae_contig1625:23694..24808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 23695..24808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1625.4272.1prot_L-elsbetiae_contig1625.4272.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1625 23351..24808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1625.4272.1

>prot_L-elsbetiae_contig1625.4272.1 ID=prot_L-elsbetiae_contig1625.4272.1|Name=mRNA_L-elsbetiae_contig1625.4272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=466bp
SLLLVSTAAAALLRPRALACLTADPDLAALAGAALAKVGGGEGGDGGGGG
GRAARQTAVFLPLAEELLRAAGGPARERLLLAGGRECRQRGSPSAPAGGG
RPLPDELAASYDGGHASSSSSISISSSRGESAQESPPAVAQPRQAPLSPA
AASTPRQEGSENGGAFRRDRGCTVWETPRGVGLTPKTTATPGGARRGPPS
SATRHGAGDAGSGSPGSAPGAYAQPRVRGQTVWETPRGVGLTPKTATPGG
AGRGPPLSVTHHGAGDAGSGSPGSAPGAYAQPRARGQTVWETPRGVGLTP
KTATAPGGAGRGPPLSVTHHGAGHAGPGSPGNASGAYAQPRARGQTVWET
PRGVGLTPKTGTPGAAASQHELGVEESKGEDAYYAGSAPSARQQPRARGQ
TVWETPRGVGLTPETAGAGRATRPTPLPAREGCSPAAWSAASGSSAASPA
ADGRHEMRSYAQGGL*
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mRNA from alignment at L-elsbetiae_contig1625:23351..24808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1625.4272.1 ID=mRNA_L-elsbetiae_contig1625.4272.1|Name=mRNA_L-elsbetiae_contig1625.4272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig1625:23351..24808- (Laminarionema elsbetiae ELsaHSoW15)
TCCCTGCTGCTTGTGTCCACCGCGGCCGCCGCCCTCCTCCGCCCCCGGGC
CTTGGCCTGCCTCACGGCGGACCCGGACCTGGCGGCGCTGGCTGGGGCGG
CGCTCGCGAAGGTTGGCGGCGGTGAAGGCGGCGACGGTGGCGGCGGCGGT
GGGCGGGCGGCCCGCCAAACCGCCGTGTTTCTTCCTCTGGCGGAGGAGCT
TTTGAGGGCCGCTGGAGGGCCGGCTCGGGAGCGCCTCCTTCTGGCCGGCG
GGCGAGAGTGCCGCCAGCGCGGCTCGCCGTCCGCGCCGGCCGGAGGGGGG
AGGCCCTTGCCGGACGAGCTCGCCGCCTCCTACGATGGTGGCCATGCCAG
CAGCAGCAGCAGCATCAGCATCAGCAGCAGCAGAGGTGAGAGCGCGCAGG
AGAGCCCCCCGGCGGTAGCACAGCCGCGTCAGGCGCCGCTGTCTCCCGCT
GCCGCATCGACCCCGCGCCAGGAAGGGAGCGAGAACGGTGGTGCGTTCCG
CAGAGACAGAGGCTGCACGGTCTGGGAGACCCCGCGAGGCGTCGGCCTTA
CCCCGAAGACGACGGCGACGCCGGGGGGAGCGCGGAGAGGACCACCGTCG
TCCGCCACCCGCCACGGCGCCGGCGATGCCGGGTCGGGTTCTCCCGGCAG
CGCGCCCGGCGCGTACGCACAGCCTCGGGTGAGGGGTCAGACGGTGTGGG
AGACCCCGAGAGGCGTCGGCCTTACCCCGAAGACGGCGACGCCGGGGGGA
GCGGGAAGAGGACCGCCGTTGTCTGTCACCCACCACGGCGCCGGCGATGC
CGGGTCGGGTTCTCCCGGCAGCGCGCCCGGCGCGTACGCACAGCCTCGGG
CGAGGGGTCAGACGGTGTGGGAGACCCCGCGAGGCGTCGGCCTTACCCCG
AAGACGGCGACAGCGCCGGGGGGAGCGGGAAGAGGACCGCCGTTGTCTGT
CACCCACCACGGCGCCGGCCATGCCGGGCCGGGTTCTCCCGGCAATGCAT
CCGGCGCGTACGCACAGCCTCGGGCGAGGGGTCAGACGGTGTGGGAGACC
CCGCGAGGCGTCGGCCTTACCCCGAAGACGGGAACGCCGGGCGCTGCTGC
TTCGCAACACGAGCGTGTTTCGGATGAAGCAGACGGCGGCAGTAGAAACG
GTCGTCGTCGCTGCTACACGGGAGTCGGCGTGGAGGAGAGCAAGGGGGAA
GACGCCTACTACGCCGGGAGCGCTCCCAGCGCGCGCCAACAGCCTCGGGC
CAGGGGCCAGACGGTGTGGGAGACTCCGAGGGGCGTTGGCCTTACACCGG
AGACTGCGGGCGCGGGTCGGGCGACGAGACCGACACCGCTTCCGGCGCGC
GAGGGTTGCTCCCCCGCGGCGTGGTCGGCGGCGTCGGGTTCCTCTGCTGC
TTCTCCGGCCGCTGATGGCCGGCATGAAATGCGGTCGTACGCGCAGGGCG
GGCTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1625:23351..24808-

>mRNA_L-elsbetiae_contig1625.4272.1 ID=mRNA_L-elsbetiae_contig1625.4272.1|Name=mRNA_L-elsbetiae_contig1625.4272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2796bp|location=Sequence derived from alignment at L-elsbetiae_contig1625:23351..24808- (Laminarionema elsbetiae ELsaHSoW15)
TCCCTGCTGCTTGTGTCCACCGCGGCCGCCGCCCTCCTCCGCCCCCGGGC
CTTGGCCTGCCTCACGGCGGACCCGGACCTGGCGGCGCTGGCTGGGGCGG
CGCTCGCGAAGGTTGGCGGCGGTGAAGGCGGCGACGGTGGCGGCGGCGGT
GGGCGGGCGGCCCGCCAAACCGCCGTGTTTCTTCCTCTGGCGGAGGAGCT
TTTGAGGGCCGCTGGAGGGCCGGCTCGGGAGCGCCTCCTTCTGGCCGGCG
GGCGAGAGTGCCGCCAGCGCGGCTCGCCGTCCGCGCCGGCCGGAGGGGGG
AGGCCCTTGCCGGACGAGCTCGCCGCCTCCTACGATGGTGGCCATGCCAG
CAGCAGCAGCAGCATCAGCATCAGCAGCAGCAGAGGTGAGAGCGCGCAGG
AGAGCCCCCCGGCGGTAGCACAGCCGCGTCAGGCGCCGCTGTCTCCCGCT
GCCGCATCGACCCCGCGCCAGGAAGGGAGCGAGAACGGTGGTGCGTTCCG
CAGAGACAGAGGCTGCACGGTCTGGGAGACCCCGCGAGGCGTCGGCCTTA
CCCCGAAGACGACGGCGACGCCGGGGGGAGCGCGGAGAGGACCACCGTCG
TCCGCCACCCGCCACGGCGCCGGCGATGCCGGGTCGGGTTCTCCCGGCAG
CGCGCCCGGCGCGTACGCACAGCCTCGGGTGAGGGGTCAGACGGTGTGGG
AGACCCCGAGAGGCGTCGGCCTTACCCCGAAGACGGCGACGCCGGGGGGA
GCGGGAAGAGGACCGCCGTTGTCTGTCACCCACCACGGCGCCGGCGATGC
CGGGTCGGGTTCTCCCGGCAGCGCGCCCGGCGCGTACGCACAGCCTCGGG
CGAGGGGTCAGACGGTGTGGGAGACCCCGCGAGGCGTCGGCCTTACCCCG
AAGACGGCGACAGCGCCGGGGGGAGCGGGAAGAGGACCGCCGTTGTCTGT
CACCCACCACGGCGCCGGCCATGCCGGGCCGGGTTCTCCCGGCAATGCAT
CCGGCGCGTACGCACAGCCTCGGGCGAGGGGTCAGACGGTGTGGGAGACC
CCGCGAGGCGTCGGCCTTACCCCGAAGACGGGAACGCCGGGCGCTGCTGC
TTCGCAACACGAGCTCCCTGCTGCTTGTGTCCACCGCGGCCGCCGCCCTC
CTCCGCCCCCGGGCCTTGGCCTGCCTCACGGCGGACCCGGACCTGGCGGC
GCTGGCTGGGGCGGCGCTCGCGAAGGTTGGCGGCGGTGAAGGCGGCGACG
GTGGCGGCGGCGGTGGGCGGGCGGCCCGCCAAACCGCCGTGTTTCTTCCT
CTGGCGGAGGAGCTTTTGAGGGCCGCTGGAGGGCCGGCTCGGGAGCGCCT
CCTTCTGGCCGGCGGGCGAGAGTGCCGCCAGCGCGGCTCGCCGTCCGCGC
CGGCCGGAGGGGGGAGGCCCTTGCCGGACGAGCTCGCCGCCTCCTACGAT
GGTGGCCATGCCAGCAGCAGCAGCAGCATCAGCATCAGCAGCAGCAGAGG
TGAGAGCGCGCAGGAGAGCCCCCCGGCGGTAGCACAGCCGCGTCAGGCGC
CGCTGTCTCCCGCTGCCGCATCGACCCCGCGCCAGGAAGGGAGCGAGAAC
GGTGGTGCGTTCCGCAGAGACAGAGGCTGCACGGTCTGGGAGACCCCGCG
AGGCGTCGGCCTTACCCCGAAGACGACGGCGACGCCGGGGGGAGCGCGGA
GAGGACCACCGTCGTCCGCCACCCGCCACGGCGCCGGCGATGCCGGGTCG
GGTTCTCCCGGCAGCGCGCCCGGCGCGTACGCACAGCCTCGGGTGAGGGG
TCAGACGGTGTGGGAGACCCCGAGAGGCGTCGGCCTTACCCCGAAGACGG
CGACGCCGGGGGGAGCGGGAAGAGGACCGCCGTTGTCTGTCACCCACCAC
GGCGCCGGCGATGCCGGGTCGGGTTCTCCCGGCAGCGCGCCCGGCGCGTA
CGCACAGCCTCGGGCGAGGGGTCAGACGGTGTGGGAGACCCCGCGAGGCG
TCGGCCTTACCCCGAAGACGGCGACAGCGCCGGGGGGAGCGGGAAGAGGA
CCGCCGTTGTCTGTCACCCACCACGGCGCCGGCCATGCCGGGCCGGGTTC
TCCCGGCAATGCATCCGGCGCGTACGCACAGCCTCGGGCGAGGGGTCAGA
CGGTGTGGGAGACCCCGCGAGGCGTCGGCCTTACCCCGAAGACGGGAACG
CCGGGCGCTGCTGCTTCGCAACACGAGCTCGGCGTGGAGGAGAGCAAGGG
GGAAGACGCCTACTACGCCGGGAGCGCTCCCAGCGCGCGCCAACAGCCTC
GGGCCAGGGGCCAGACGGTGTGGGAGACTCCGAGGGGCGTTGGCCTTACA
CCGGAGACTGCGGGCGCGGGTCGGGCGACGAGACCGACACCGCTTCCGGC
GCGCGAGGGTTGCTCCCCCGCGGCGTGGTCGGCGGCGTCGGGTTCCTCTG
CTGCTTCTCCGGCCGCTGATGGCCGGCATGAAATGCGGTCGTACGCGCAG
GGCGGGCTCTGATCGGCGTGGAGGAGAGCAAGGGGGAAGACGCCTACTAC
GCCGGGAGCGCTCCCAGCGCGCGCCAACAGCCTCGGGCCAGGGGCCAGAC
GGTGTGGGAGACTCCGAGGGGCGTTGGCCTTACACCGGAGACTGCGGGCG
CGGGTCGGGCGACGAGACCGACACCGCTTCCGGCGCGCGAGGGTTGCTCC
CCCGCGGCGTGGTCGGCGGCGTCGGGTTCCTCTGCTGCTTCTCCGGCCGC
TGATGGCCGGCATGAAATGCGGTCGTACGCGCAGGGCGGGCTCTGA
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