mRNA_L-elsbetiae_contig1625.4271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1625.4271.1
Unique NamemRNA_L-elsbetiae_contig1625.4271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 8.200e-39
Identity = 70/99 (70.71%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 RYGRRHGLEVAHFPGFGSTIPIATAAEMA--RNNHTRLDIMHYHIDTDTPRQLRWANAKGVYKDVMRDPEDINFITIFREPRERLLSFYSFFVEHDTKV 291
            RYGRRH LEVAHFPGFGSTIPI  AA      ++  R+DIMHYHIDTDTPRQ RW +AK  Y+DVMR P+DINFITI R+PR+ LLSFYSFFVE +T V
Sbjct:  175 RYGRRHDLEVAHFPGFGSTIPIEEAARQTGLADDGKRVDIMHYHIDTDTPRQERWGSAKEHYRDVMRYPDDINFITILRDPRDWLLSFYSFFVEFETGV 273
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BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.950e-17
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 RYGRRHGLEVAHFPGFGSTIPIATAAEMA--RNNHTRLDIMHYHIDTDTPRQLRWANAKGVYKDVMRDPEDINFITIFREPRERLLSFYSFFVEHDTK 288
            RY RRH +++AHF    S IP+  A +    R    R DIMHYH+      +  W  A+  Y+ ++R+ + +NF+T+ REPR  LLS+Y +F++  T+
Sbjct:  121 RYARRHNVKLAHFDDHNSAIPLREAVQQTEGRQGKGRCDIMHYHVSAFGQFEGSWRQAEQAYRRILRNTKAVNFVTVVREPRSHLLSYYYYFLQPQTQ 218
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BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Match: A0A6H5JIK1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.160e-17
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 RYGRRHGLEVAHFPGFGSTIPIATAAEMARNNHTRLDIMHYHIDTDTPRQLRWANAKGVYKDVMRDPEDINFITIFREPRERLLSFYSFFVE--HDTKVE 294
            RY  RH L++++F G  S   + +AA   + N  R+D+MHYHI         W  A   Y+ +MR+P+DINF+T+ REPR  LLS+Y +F++  H   +E
Sbjct:   71 RYAARHHLKLSYFGG-SSVTDLRSAANETKENGQRVDLMHYHISPRGQYMGTWNEAVTHYRVIMRNPDDINFVTVLREPRSHLLSYYYYFLQPLHQQSIE 169
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BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Match: A0A6G6CDJ0_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDJ0_SACJA)

HSP 1 Score: 79.7 bits (195), Expect = 2.450e-15
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 RYGRRHGLEVAHFPGFGSTIPIATAAEMARNNHTRLDIMHYHIDTDTPRQLRWANAKGVYKDVMRDPEDINFITIFREPRERLLSFYSFFVEHDTKVESE 300
            RY  RH L++A      +  P   A ++ +    R+DIMHYHI      +  W  A+  Y+ +MR+P+++N +T+ REPRE  +S+Y +FVE  TK+  E
Sbjct:  149 RYAVRHNLKLARVGQESAVDPKWFATQVQQGKSERVDIMHYHISNKGHLKGLWPGARENYRGIMREPDNVNLLTMMREPREHFISYYYYFVEPATKLSLE 248
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BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Match: A0A6H5JSN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.530e-14
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   22 LEVAHFPGFGSTIPIATAAEMARNNHTRLDIMHYHIDTDTPRQLRWANAKGVYKDVMRDPEDINFITIFREPRERLL 252
             ++++F G  S   + +AA   + +  R+D+MHYHI         W  A+  Y+D+MR+P+DINF+T+ REPR  LL
Sbjct:    6 FQLSYFGGSSSVTSLRSAANKTKQSGQRVDLMHYHITARGQYWGTWNEAETYYRDIMRNPDDINFVTVLREPRSHLL 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1625.4271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JMW5_9PHAE8.200e-3970.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRU8_ECTSI6.950e-1737.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JIK1_9PHAE9.160e-1740.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6G6CDJ0_SACJA2.450e-1537.00Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A6H5JSN6_9PHAE4.530e-1438.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1625contigL-elsbetiae_contig1625:5660..7431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog2880.D8LK91
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons3
Model size304
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1625.4271.1prot_L-elsbetiae_contig1625.4271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1625 5660..7431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.9335995-CDS-L-elsbetiae_contig1625:5659..58781622815670.9335995-CDS-L-elsbetiae_contig1625:5659..5878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 5660..5878 -
1691683027.809729-CDS-L-elsbetiae_contig1625:5659..58781691683027.809729-CDS-L-elsbetiae_contig1625:5659..5878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 5660..5878 -
1622815670.9476237-CDS-L-elsbetiae_contig1625:6723..67801622815670.9476237-CDS-L-elsbetiae_contig1625:6723..6780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 6724..6780 -
1691683027.8223047-CDS-L-elsbetiae_contig1625:6723..67801691683027.8223047-CDS-L-elsbetiae_contig1625:6723..6780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 6724..6780 -
1622815670.9626782-CDS-L-elsbetiae_contig1625:7404..74311622815670.9626782-CDS-L-elsbetiae_contig1625:7404..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 7405..7431 -
1691683027.831623-CDS-L-elsbetiae_contig1625:7404..74311691683027.831623-CDS-L-elsbetiae_contig1625:7404..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1625 7405..7431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1625.4271.1

>prot_L-elsbetiae_contig1625.4271.1 ID=prot_L-elsbetiae_contig1625.4271.1|Name=mRNA_L-elsbetiae_contig1625.4271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
RYGRRHGLEVAHFPGFGSTIPIATAAEMARNNHTRLDIMHYHIDTDTPRQ
LRWANAKGVYKDVMRDPEDINFITIFREPRERLLSFYSFFVEHDTKVESE
*
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mRNA from alignment at L-elsbetiae_contig1625:5660..7431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1625.4271.1 ID=mRNA_L-elsbetiae_contig1625.4271.1|Name=mRNA_L-elsbetiae_contig1625.4271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1772bp|location=Sequence derived from alignment at L-elsbetiae_contig1625:5660..7431- (Laminarionema elsbetiae ELsaHSoW15)
CGCTACGGCAGGCGACACGGCCTTGAGGTGACGTGATTTTCAGTCGAACG
AAGCAGTTTTGGGATAACAATTGACAGGCGATACGGTAGGGAATACGGCC
TCGAGAGGTAACGCGCTTCTAGTAAAGCGAAGAGAGCAACTGTGAGATGC
CATACAGGAACAGACAGAAGAGGGTTGAGCTACCCGAACAAGAAGCCAAT
AGGCCCAGTTAAACTATTTTCACGTCCTTGCAACGATGCTCTAATCGAAC
ATCACTTCCGTATTGGCTACTCTACCTTCCTTCTGCATATACAAAGTCCG
ATTGCGCGCCCGAGGACAAGTTGCCAGAACAAACTAAAACGAACGTAGTT
TGCGTGTGTTTAACCTTTCGTACAAACCAAATACATGCATGCATAGGTGT
GAACCACGTTTGGAATACATCTAGACTATGCTCTTCGGCAGGCATCGCTG
GTCTCAATATCTATGACATTATTTAGAGTGGGCCCTGGGTTCGTTTCCTC
TGGTGCTGCCTGCGCGAAACAACACCCCCTTAAGTGAAATTCAGCCGTGC
CTTGGGCGTGGTTTCGCAGAAAAATAAAGTGTGTGTTTTGGTACGCCGTA
TTCAGCTGCTACAGCAGCAGTAACACCATCGCCGATCGTGACTAATCCCA
GGTGGCGCATTTTCCTGGTTTTGGGTCCACCATCCCTATCGCTACGGCCG
CTGAGATGGTGAGGTTTCTGCGTTCTGCGTGTGTAAAGGTTTTTACTGTG
ACTGATGGAGCTGTTAGAGTGCAGCGAGCAGCTAACTGCTCGCCGAGCTC
TCTTTCAGGGGAGTGTTTATAGCAATCTCGGAGGAAGACCTGGCGGTTGG
GTCAGAAACATATCTGCATACAGACACTAATGCTGCGTAATTGAGTAGCC
TGTTGTTGCCTCTTGCGGTGATATTGTACCAAGGCTCGCCTTGCCTCCAA
CGATACTTGCTGCACACCGTTACTACTTATGCTACCCCTACCGTAGGCAT
AATTATGTAAGATACCAACCCCTGGATCGATTTTGAAAGATCGATTACTG
CTGCTGCCCCAACCAAGGAGTTAACGATTTCGGAAGGGTCTCAACGAGAT
GATTCCAAAGCCACAACATGCCCTTCCTTCTGTGTGGAGTAATAAGGATT
TGCCGCTTTGTGTGGTATCTTCCATCATACAATGACCTACGATAAGTGTT
GGACGTAGTATATCACCCCCCTTGAGCACGAAGCGTCCAAGCCCCACAAT
GATATGGATGGCGGCGTTAGAAGATACACCATCGGGATCTACCCGAAGGG
GTGTTTTGGTGAGGGTGTCCTCTTGGAGGCGGGACTGTCGAGCTCTTGAA
AGTCGGAGGGCTTCGCATATTTAATTCCGAACGATGGTAGTCATCCACGC
ACGCGCGGATTGCTGAATTCCTCCTAACTTAGCACGATGTGCATTTGATT
TGTGACCACGGGCTAGAAATTGGCTGCGGGATAGTTAATGTGATATTCAA
CCAACACCAACGACGACAAACGACAACGACAACATACGCACGTGCGGACG
CAGGCAAGAAACAACCACACTCGTCTGGACATCATGCACTACCACATCGA
CACGGACACTCCGAGACAACTACGGTGGGCGAACGCGAAGGGGGTGTACA
AGGACGTGATGAGGGATCCGGAGGACATCAACTTCATCACGATATTCCGC
GAACCACGAGAAAGGCTGCTCAGCTTTTACTCGTTTTTCGTGGAGCACGA
CACAAAGGTGGAGAGTGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1625:5660..7431-

>mRNA_L-elsbetiae_contig1625.4271.1 ID=mRNA_L-elsbetiae_contig1625.4271.1|Name=mRNA_L-elsbetiae_contig1625.4271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1625:5660..7431- (Laminarionema elsbetiae ELsaHSoW15)
CGCTACGGCAGGCGACACGGCCTTGAGCGCTACGGCAGGCGACACGGCCT
TGAGGTGGCGCATTTTCCTGGTTTTGGGTCCACCATCCCTATCGCTACGG
CCGCTGAGATGGTGGCGCATTTTCCTGGTTTTGGGTCCACCATCCCTATC
GCTACGGCCGCTGAGATGGCAAGAAACAACCACACTCGTCTGGACATCAT
GCACTACCACATCGACACGGACACTCCGAGACAACTACGGTGGGCGAACG
CGAAGGGGGTGTACAAGGACGTGATGAGGGATCCGGAGGACATCAACTTC
ATCACGATATTCCGCGAACCACGAGAAAGGCTGCTCAGCTTTTACTCGTT
TTTCGTGGAGCACGACACAAAGGTGGAGAGTGAATGAGCAAGAAACAACC
ACACTCGTCTGGACATCATGCACTACCACATCGACACGGACACTCCGAGA
CAACTACGGTGGGCGAACGCGAAGGGGGTGTACAAGGACGTGATGAGGGA
TCCGGAGGACATCAACTTCATCACGATATTCCGCGAACCACGAGAAAGGC
TGCTCAGCTTTTACTCGTTTTTCGTGGAGCACGACACAAAGGTGGAGAGT
GAATGA
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