mRNA_L-elsbetiae_contig16248.4270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16248.4270.1
Unique NamemRNA_L-elsbetiae_contig16248.4270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16248.4270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16248contigL-elsbetiae_contig16248:2465..3842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size797
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16248.4270.1prot_L-elsbetiae_contig16248.4270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16248 2632..3833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.8650641-UTR-L-elsbetiae_contig16248:2464..26311622815670.8650641-UTR-L-elsbetiae_contig16248:2464..2631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16248 2465..2631 -
1691683027.7610166-UTR-L-elsbetiae_contig16248:2464..26311691683027.7610166-UTR-L-elsbetiae_contig16248:2464..2631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16248 2465..2631 -
1622815670.9014251-UTR-L-elsbetiae_contig16248:3833..38421622815670.9014251-UTR-L-elsbetiae_contig16248:3833..3842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16248 3834..3842 -
1691683027.7976873-UTR-L-elsbetiae_contig16248:3833..38421691683027.7976873-UTR-L-elsbetiae_contig16248:3833..3842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16248 3834..3842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.8797324-CDS-L-elsbetiae_contig16248:2631..28921622815670.8797324-CDS-L-elsbetiae_contig16248:2631..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16248 2632..2892 -
1691683027.7706673-CDS-L-elsbetiae_contig16248:2631..28921691683027.7706673-CDS-L-elsbetiae_contig16248:2631..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16248 2632..2892 -
1622815670.8897893-CDS-L-elsbetiae_contig16248:3473..38331622815670.8897893-CDS-L-elsbetiae_contig16248:3473..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16248 3474..3833 -
1691683027.7827063-CDS-L-elsbetiae_contig16248:3473..38331691683027.7827063-CDS-L-elsbetiae_contig16248:3473..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16248 3474..3833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16248.4270.1

>prot_L-elsbetiae_contig16248.4270.1 ID=prot_L-elsbetiae_contig16248.4270.1|Name=mRNA_L-elsbetiae_contig16248.4270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MSSSTEPPLRQLRVAPPFAKCSSVLISPAAEDTCFSWAEDGSQGSTNAET
YVAVASYGCLLSSARGGETAKLQRASSSGGGDWLVYASVWADFCGESRHR
LLLVDGGASVVTHGNGRAGHLGHGTHGYGLHPEDGDDSGRPGKHRSKRSS
GAWFASMRVSTAGATGAGAGGGSEPEVGGDAARSRRGRGVGRVSSRLLTL
RRTRVA*
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mRNA from alignment at L-elsbetiae_contig16248:2465..3842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16248.4270.1 ID=mRNA_L-elsbetiae_contig16248.4270.1|Name=mRNA_L-elsbetiae_contig16248.4270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1378bp|location=Sequence derived from alignment at L-elsbetiae_contig16248:2465..3842- (Laminarionema elsbetiae ELsaHSoW15)
CCCGTTGAAATGAGCTCCTCGACGGAGCCCCCCCTGCGACAGCTGAGGGT
AGCACCGCCGTTCGCCAAGTGCTCTTCCGTGCTCATTTCGCCAGCAGCAG
AGGACACTTGCTTTTCCTGGGCTGAGGACGGTAGCCAGGGGAGTACCAAC
GCCGAGACGTACGTGGCCGTGGCGTCTTACGGCTGTCTGCTCTCTTCCGC
CAGAGGAGGTGAGACCGCCAAGCTCCAGAGGGCCAGCAGCAGCGGCGGCG
GCGACTGGTTGGTCTATGCGTCGGTCTGGGCCGATTTTTGCGGCGAGAGT
AGGCACAGGCTCCTGCTGGTGGACGGGGGGGCATCGGTGGTAACGCACGG
GAACGGCAGGGCTGGCCATGTGAGTTCAGAGGGACGGGCAAATACTAGCG
CTTGCTGCTGTGGTGGGTAGACTAGTGCACTGCTGTTTGTTGTGCTTATA
CTTCTACATACATGCGTGGTTTCTTTGTCTGCATGGGGCGCGCTATACCG
GTTGTCCGCGAGATATGTAGCAATCCAGCGGCCGCCGGCTTTGGCAGTCC
GAGAAGTTTTCGTTGACCTCGGCCTTGGCTCAACTTGTGTTTGTGTGCGG
TGTTATCTGTTTCGAGGCTCTGTTTGAGCGTTCCGCGGCAGTGTACTTTC
TTCCAACGCAGCACGCATTCGAGTCATCTCTCACCCTCTCGATCCACACA
TGAAGACTTGCCCCCTCCCCGTAAGCATCCACCCGGCATCCTGACCTCTG
TGTGGTGCACCAGAAAAGCTAGTCCTGACCCACGGCTGGTGCACGGGTGT
TGTTTATGTGCACTACCGCTGTCCAAAGGTATACTCCGTATCTCTTTTTT
CTTGCTCGGGGGCACCTGCTAGACGTACCCACTCCATTGTTGTGTCTCTC
CGTTCATCTTGCTCACCCCTACCCTGCCTACGACACCCCCTCCCCAGCAG
CTCGGCCACGGTACCCACGGCTACGGTCTGCACCCCGAAGATGGTGACGA
CAGCGGCCGTCCTGGGAAGCACCGTTCGAAGAGGTCAAGCGGGGCTTGGT
TTGCAAGCATGCGGGTCTCGACTGCTGGTGCTACCGGTGCTGGTGCTGGT
GGTGGTTCGGAACCCGAAGTCGGAGGGGACGCAGCACGAAGTAGGAGGGG
TAGAGGGGTAGGGCGAGTCTCCTCGCGCTTGTTGACGCTGCGGCGGACGC
GCGTGGCTTGAAAGATGACCAGGCGTTAGCCGACGACGGAAAAGTGCCTG
AGTATGTAAAAGCGGCGTGACAATCGGTGTCGTGGTTCTTCGTGTTCATC
GAGTCGCTCGTGTCTGTCGTCTACATGCATGCACGCGTGGAGAAAACACG
CAAGACGGTTTGCCGGTCGGTGGTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16248:2465..3842-

>mRNA_L-elsbetiae_contig16248.4270.1 ID=mRNA_L-elsbetiae_contig16248.4270.1|Name=mRNA_L-elsbetiae_contig16248.4270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig16248:2465..3842- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCCTCGACGGAGCCCCCCCTGCGACAGCTGAGGGTAGCACCGCC
GTTCGCCAAGTGCTCTTCCGTGCTCATTTCGCCAGCAGCAGAGGACACTT
GCTTTTCCTGGGCTGAGGACGGTAGCCAGGGGAGTACCAACGCCGAGACG
TACGTGGCCGTGGCGTCTTACGGCTGTCTGCTCTCTTCCGCCAGAGGAGG
TGAGACCGCCAAGCTCCAGAGGGCCAGCAGCAGCGGCGGCGGCGACTGGT
TGGTCTATGCGTCGGTCTGGGCCGATTTTTGCGGCGAGAGTAGGCACAGG
CTCCTGCTGGTGGACGGGGGGGCATCGGTGGTAACGCACGGGAACGGCAG
GGCTGGCCATATGAGCTCCTCGACGGAGCCCCCCCTGCGACAGCTGAGGG
TAGCACCGCCGTTCGCCAAGTGCTCTTCCGTGCTCATTTCGCCAGCAGCA
GAGGACACTTGCTTTTCCTGGGCTGAGGACGGTAGCCAGGGGAGTACCAA
CGCCGAGACGTACGTGGCCGTGGCGTCTTACGGCTGTCTGCTCTCTTCCG
CCAGAGGAGGTGAGACCGCCAAGCTCCAGAGGGCCAGCAGCAGCGGCGGC
GGCGACTGGTTGGTCTATGCGTCGGTCTGGGCCGATTTTTGCGGCGAGAG
TAGGCACAGGCTCCTGCTGGTGGACGGGGGGGCATCGGTGGTAACGCACG
GGAACGGCAGGGCTGGCCATCTCGGCCACGGTACCCACGGCTACGGTCTG
CACCCCGAAGATGGTGACGACAGCGGCCGTCCTGGGAAGCACCGTTCGAA
GAGGTCAAGCGGGGCTTGGTTTGCAAGCATGCGGGTCTCGACTGCTGGTG
CTACCGGTGCTGGTGCTGGTGGTGGTTCGGAACCCGAAGTCGGAGGGGAC
GCAGCACGAAGTAGGAGGGGTAGAGGGGTAGGGCGAGTCTCCTCGCGCTT
GTTGACGCTGCGGCGGACGCGCGTGGCTTGACTCGGCCACGGTACCCACG
GCTACGGTCTGCACCCCGAAGATGGTGACGACAGCGGCCGTCCTGGGAAG
CACCGTTCGAAGAGGTCAAGCGGGGCTTGGTTTGCAAGCATGCGGGTCTC
GACTGCTGGTGCTACCGGTGCTGGTGCTGGTGGTGGTTCGGAACCCGAAG
TCGGAGGGGACGCAGCACGAAGTAGGAGGGGTAGAGGGGTAGGGCGAGTC
TCCTCGCGCTTGTTGACGCTGCGGCGGACGCGCGTGGCTTGA
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