mRNA_L-elsbetiae_contig16239.4267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16239.4267.1
Unique NamemRNA_L-elsbetiae_contig16239.4267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16239.4267.1 vs. uniprot
Match: D8LQU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 9.580e-38
Identity = 84/140 (60.00%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  157 HPPTYFPCNKGKSCLFEADAAHLSRALRLPGALTLMVASKLSKRQAAIHGSCPINLSTFSPDLELSRSLPRAVSSWGHYTHRVESKDPRGRTVATADLTVSLSCLGAAGALFQ--------------PNNSPAATASPQP 534
            HP  +F C+KGKSC+F A+ A LSRAL+   ALT +VASKLS RQAAIHGSC I+LSTF P+ ELS SLPRAVS WGH T  VESKD +G TVA A LTVSLSCLGA G+L                 N SP+A A P+P
Sbjct:  142 HPKPFF-CSKGKSCIFTANPADLSRALQTQSALTFLVASKLSLRQAAIHGSCAIDLSTFGPNAELSHSLPRAVSCWGHRTTCVESKDLKGATVARAGLTVSLSCLGATGSLIHLTPVRTGVASYRASGNGSPSAAAPPRP 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16239.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQU0_ECTSI9.580e-3860.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16239contigL-elsbetiae_contig16239:1273..3022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002270.1
Exons3
Model size881
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16239.4267.1prot_L-elsbetiae_contig16239.4267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16239 1273..3022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.6762125-CDS-L-elsbetiae_contig16239:1272..17501622815670.6762125-CDS-L-elsbetiae_contig16239:1272..1750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 1273..1750 -
1691683027.6691108-CDS-L-elsbetiae_contig16239:1272..17501691683027.6691108-CDS-L-elsbetiae_contig16239:1272..1750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 1273..1750 -
1622815670.690045-CDS-L-elsbetiae_contig16239:2090..22001622815670.690045-CDS-L-elsbetiae_contig16239:2090..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 2091..2200 -
1691683027.6793606-CDS-L-elsbetiae_contig16239:2090..22001691683027.6793606-CDS-L-elsbetiae_contig16239:2090..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 2091..2200 -
1622815670.7029939-CDS-L-elsbetiae_contig16239:2731..30221622815670.7029939-CDS-L-elsbetiae_contig16239:2731..3022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 2732..3022 -
1691683027.6876912-CDS-L-elsbetiae_contig16239:2731..30221691683027.6876912-CDS-L-elsbetiae_contig16239:2731..3022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16239 2732..3022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16239.4267.1

>prot_L-elsbetiae_contig16239.4267.1 ID=prot_L-elsbetiae_contig16239.4267.1|Name=mRNA_L-elsbetiae_contig16239.4267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
TRLFSDKTSALPSILLCLLDFEPLVFEGLQKEEGYTCSQDTNSNSNEDGQ
DGHPPTYFPCNKGKSCLFEADAAHLSRALRLPGALTLMVASKLSKRQAAI
HGSCPINLSTFSPDLELSRSLPRAVSSWGHYTHRVESKDPRGRTVATADL
TVSLSCLGAAGALFQPNNSPAATASPQPPRTLSTAAVAPPPPPCCTPETA
QNNPRPVQSPESGGPSGDGGRKGREKQPAAAAGKRGRCAAAEEEQADRTR
PSRGGGGRRFGRQEPGGGASWTCEFNPQDGSLAEVVTSTGTAL
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mRNA from alignment at L-elsbetiae_contig16239:1273..3022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16239.4267.1 ID=mRNA_L-elsbetiae_contig16239.4267.1|Name=mRNA_L-elsbetiae_contig16239.4267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1750bp|location=Sequence derived from alignment at L-elsbetiae_contig16239:1273..3022- (Laminarionema elsbetiae ELsaHSoW15)
ACGCGCTTGTTCTCGGACAAAACAAGCGCGCTTCCCAGCATCTTGCTGTG
TCTCCTCGACTTTGAGCCCTTGGTTTTTGAGGGGCTGCAGAAAGAGGAAG
GCTATACATGTAGTCAAGACACGAACAGCAACAGCAATGAGGATGGCCAA
GACGGCCACCCTCCGACATATTTCCCCTGCAACAAGGGGAAATCGTGTTT
GTTCGAGGCGGACGCCGCACACCTGTCCCGAGCCCTCCGTCTACCCGGTG
CGCTCACGCTCATGGTGGCATCGAAGTTATCCAAGAGACAGGTATGCTCG
AATGGAAAGGAGAACTTCACAGAGCTCAACGCAAGATGGAAGCTTTTCAT
GTCCACCGGCCCGTTCCGGCTCATGCATAGACTGCTCTAGTTCTTTGGGC
TGCCCGCCTAGATAGATGGCCGGTTTCGTAGCGTTTAGACCAACAAAACG
TTCAGAAGAACAGTCCTGGCTGGCTGGGAAAGCCTTGCAGACGTTATTGT
GGCTACGTTGTCGATATTATGAGCGGCCTTGATGTACAGTAGTAGTGCCC
CCCGCCCTTTCCAACAAACCGCCATCTGTGGTAGATGCTTCACGAAGGCA
AGAACTACTACATACAACAATCAGTGCAGGATGAACAGGGACTCGACAAC
CTCGCTGCGCTCTCGAAGCGTACTTGCATACGTATGAAGCGCAATCCTAA
AAACCATTGCAGTGTGTGCTTCAGTTTTGTTTTTGCAATTCCAGGGCTGT
TTCGTCTGATCTCTCCATCTCACACAGCGAGAAAGAACCTCCGCTGATGC
AAAATTCGTGCTACTGCTGTAGGCGGCGATACACGGGTCATGCCCCATCA
ACCTGTCTACGTTCAGTCCCGACCTTGAGCTCTCTCGGTCCCTCCCCCGT
GCGGTTTCATCTTGGGGGCACTATACTCATCGGTGAGACCCTTGTCCGGA
GCAGTGCTTGCGATGCTTATTGGCAATGCCCTATTTTCTGCCGGCACCCG
CCGTCCCTGCGAAACGTGTATCACGCGTCATATGGGTAAAACGATTGATG
GCTCTATGCGCTCTGTGCGCGCGTGTATTCGTGCAGCGTGCATGTCGTGT
GCGGCCTTCGTCAGAAAGCAGCCCCAAAAACCTGGCTTGAAGTACCTCCT
CCCCCTCCCCCTCTCTTCGCAACCTTGTATGCCGGCCTTCGCTGCCTGTA
TCGTCGACGGCGGGGGTAACTCTTCTGTGTGTCCAAACCCTAACCGATGG
TGTCGTTACCGACACTCATCAGGGTGGAATCTAAGGACCCAAGAGGCAGA
ACGGTAGCCACCGCAGACCTCACGGTTTCCCTCTCCTGCTTGGGGGCAGC
GGGAGCTTTGTTTCAGCCCAACAACAGTCCAGCGGCGACGGCTTCGCCCC
AGCCTCCTAGAACGCTCAGCACTGCGGCCGTCGCGCCACCACCACCGCCG
TGTTGCACTCCGGAGACCGCACAAAATAACCCCCGACCCGTCCAAAGCCC
CGAGTCAGGAGGACCAAGTGGCGACGGAGGGAGGAAAGGGAGAGAGAAGC
AACCCGCTGCGGCGGCTGGAAAACGCGGAAGGTGCGCGGCAGCCGAGGAG
GAACAAGCTGACAGGACGCGCCCTTCGCGCGGGGGTGGCGGTCGACGGTT
CGGGAGGCAAGAACCAGGGGGCGGCGCCTCTTGGACCTGCGAGTTCAACC
CTCAAGACGGGAGCCTCGCGGAAGTTGTGACGTCTACAGGCACCGCTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16239:1273..3022-

>mRNA_L-elsbetiae_contig16239.4267.1 ID=mRNA_L-elsbetiae_contig16239.4267.1|Name=mRNA_L-elsbetiae_contig16239.4267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig16239:1273..3022- (Laminarionema elsbetiae ELsaHSoW15)
ACGCGCTTGTTCTCGGACAAAACAAGCGCGCTTCCCAGCATCTTGCTGTG
TCTCCTCGACTTTGAGCCCTTGGTTTTTGAGGGGCTGCAGAAAGAGGAAG
GCTATACATGTAGTCAAGACACGAACAGCAACAGCAATGAGGATGGCCAA
GACGGCCACCCTCCGACATATTTCCCCTGCAACAAGGGGAAATCGTGTTT
GTTCGAGGCGGACGCCGCACACCTGTCCCGAGCCCTCCGTCTACCCGGTG
CGCTCACGCTCATGGTGGCATCGAAGTTATCCAAGAGACAGACGCGCTTG
TTCTCGGACAAAACAAGCGCGCTTCCCAGCATCTTGCTGTGTCTCCTCGA
CTTTGAGCCCTTGGTTTTTGAGGGGCTGCAGAAAGAGGAAGGCTATACAT
GTAGTCAAGACACGAACAGCAACAGCAATGAGGATGGCCAAGACGGCCAC
CCTCCGACATATTTCCCCTGCAACAAGGGGAAATCGTGTTTGTTCGAGGC
GGACGCCGCACACCTGTCCCGAGCCCTCCGTCTACCCGGTGCGCTCACGC
TCATGGTGGCATCGAAGTTATCCAAGAGACAGGCGGCGATACACGGGTCA
TGCCCCATCAACCTGTCTACGTTCAGTCCCGACCTTGAGCTCTCTCGGTC
CCTCCCCCGTGCGGTTTCATCTTGGGGGCACTATACTCATCGGCGGCGAT
ACACGGGTCATGCCCCATCAACCTGTCTACGTTCAGTCCCGACCTTGAGC
TCTCTCGGTCCCTCCCCCGTGCGGTTTCATCTTGGGGGCACTATACTCAT
CGGGTGGAATCTAAGGACCCAAGAGGCAGAACGGTAGCCACCGCAGACCT
CACGGTTTCCCTCTCCTGCTTGGGGGCAGCGGGAGCTTTGTTTCAGCCCA
ACAACAGTCCAGCGGCGACGGCTTCGCCCCAGCCTCCTAGAACGCTCAGC
ACTGCGGCCGTCGCGCCACCACCACCGCCGTGTTGCACTCCGGAGACCGC
ACAAAATAACCCCCGACCCGTCCAAAGCCCCGAGTCAGGAGGACCAAGTG
GCGACGGAGGGAGGAAAGGGAGAGAGAAGCAACCCGCTGCGGCGGCTGGA
AAACGCGGAAGGTGCGCGGCAGCCGAGGAGGAACAAGCTGACAGGACGCG
CCCTTCGCGCGGGGGTGGCGGTCGACGGTTCGGGAGGCAAGAACCAGGGG
GCGGCGCCTCTTGGACCTGCGAGTTCAACCCTCAAGACGGGAGCCTCGCG
GAAGTTGTGACGTCTACAGGCACCGCTCTCGGTGGAATCTAAGGACCCAA
GAGGCAGAACGGTAGCCACCGCAGACCTCACGGTTTCCCTCTCCTGCTTG
GGGGCAGCGGGAGCTTTGTTTCAGCCCAACAACAGTCCAGCGGCGACGGC
TTCGCCCCAGCCTCCTAGAACGCTCAGCACTGCGGCCGTCGCGCCACCAC
CACCGCCGTGTTGCACTCCGGAGACCGCACAAAATAACCCCCGACCCGTC
CAAAGCCCCGAGTCAGGAGGACCAAGTGGCGACGGAGGGAGGAAAGGGAG
AGAGAAGCAACCCGCTGCGGCGGCTGGAAAACGCGGAAGGTGCGCGGCAG
CCGAGGAGGAACAAGCTGACAGGACGCGCCCTTCGCGCGGGGGTGGCGGT
CGACGGTTCGGGAGGCAAGAACCAGGGGGCGGCGCCTCTTGGACCTGCGA
GTTCAACCCTCAAGACGGGAGCCTCGCGGAAGTTGTGACGTCTACAGGCA
CCGCTCTC
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